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Synthesis of habitat availability and carrying capacity research to support water management decisions and enhance conditions for Pacific salmon in the Willamette River, Oregon

Flow management is complex in the Willamette River Basin where the U.S. Army Corps of Engineers owns and operates a system of 13 dams and reservoirs (hereinafter Willamette Project), which are spread throughout three large tributaries including the Middle Fork Willamette, McKenzie, and Santiam Rivers. The primary purpose of the Willamette Project is flood-risk management, which provides critical protection to the Willamette Valley, but flow managers must also consider factors such as power generation, water-quality improvement, irrigation, recreation, and protection for aquatic species such as U.S. Endangered Species Act-listed Chinook salmon ( Oncorhynchus tshawytscha ) and steelhead ( O. mykiss ). Flow-management decision-making in the basin can benefit from models that allow for flow-scenario comparisons and a wide range of modeling methods are available. For this study, we examined existing datasets and modeling efforts in the basin and provided an overview of available options. Most previous studies used Physical Habitat Simulation System, habitat data were collected from a series of transects within modeled reaches, and habitat suitability indices were obtained from the literature, or using expert opinion. These studies provide information for specific reaches of the Willamette River Basin, which limits their ability to provide broad-scale predictive capability. Recent efforts to develop a two-dimensional hydraulic model in the mainstem Willamette River, and in specific reaches of primary tributaries downstream from Project dams, have bolstered modeling capabilities in the basin. This work has developed spatially continuous water depth and velocity data in more than 250 kilometers (km) of river downstream from Project dams and has predictive capability throughout the year at flows up to normal peak levels. Additionally, other methods are described for estimating habitat availability, which include habitat suitability criteria, logistic regression, occupancy and abundance modeling, and energetic based approaches. There are strengths and weaknesses to each approach and selection of the preferred approach in the Willamette River Basin will depend on the desired metrics of interest and the risk tolerance of managers and stakeholders in the basin.

Oregon

Wind River Subbasin Restoration, annual report of U.S. Geological Survey activities: Parr monitoring and instream passive integrated transponder detection, January 1, 2015 – December 31, 2015

We used Passive Integrated Transponder (PIT)-tagging and a series of instream PIT-tag interrogation systems (PTIS) to investigate life-histories, populations, and efficacy of habitat restoration actions for steelhead Oncorhynchus mykiss in the Wind River subbasin, WA. Our tagging focused on parr in headwater areas of the subbasin and our PTISs provide information on movement of these parr, which is primarily, but not exclusively downstream. The PTISs also provide data on life-history aspects of other steelhead life-stages. The Wind River subbasin in southwest Washington State provides habitat for a population of wild Lower Columbia River steelhead and is an excellent watershed for long-term studies of population dynamics and responses to restoration of this wild population. Much data on steelhead population metrics have been gathered from the Wind River providing information on habitat restoration actions and ongoing research into steelhead life histories. Additionally, the Wind River is an excellent control watershed of an exclusivly wild steelhead population to which basins with hatchery programs can compare. No hatchery steelhead have been planted in the Wind River subbasin since 1994, and hatchery adults are estimated to be less than one percent of adults in any year (pers comm. Thomas Buehrens, Washington Department of Fish and Wildlife). Numerous restoration actions have been implemented in the subbasin, including the removal of Hemlock Dam on Trout Creek in 2009. Data from our study, and companion work by Washington Department of Fish and Wildlife (WDFW), will contribute to Bonneville Power Administration’s (BPA) Research Monitoring and Evaluation (RM&E) Program Strategy of Fish Population Status Monitoring (www.cbfish.org/ProgramStrategy.mvc/ViewProgramStrategySummary/1), specifically the sub-strategies of: 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and to uncertainties research regarding differing life histories of a wild steelhead population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. During summer 2015, we sampled and PIT-tagged age-0 and age-1 steelhead parr in headwater areas of the Wind River subbasin to characterize population traits and investigate variable life-histories, including growth and parr movement downstream prior to smolting. Throughout the year, we maintained a series of instream PTISs to monitor movement of tagged steelhead parr, smolts, and adults. Detections at the instream PTISs showed trends of parr 8 emigration during summer and fall, in addition to the expected movement of parr and smolts in spring. These data are increasing our understanding of varied life histories of juvenile steelhead; paired with other steelhead population work in the subbasin we hope to better understand the factors influencing parr movements. Monitoring of PIT-tagged fish over multiple years is providing information on contribution of various life-history strategies to smolt production and adult returns, as well as identifying factors influencing parr movement. Movements of PIT-tagged adult steelhead were also monitored with our instream PTISs. These data have provided information on timing of adult movements to various parts of the watershed, which allows us to assess adult returns to tributary watersheds within the Wind River subbasin. Determination of adult use of tributary watersheds is providing data to contribute to evaluation of the efficacy of the removal of Hemlock Dam on Trout Creek. Hemlock Dam, located at rkm 2.0 of Trout Creek was removed in summer 2009 and had contributed to hydrologic impairment of Trout Creek. Evaluating restoration efforts is of interest to many managers and agencies so that funding and time are allocated for best results. The evaluation of various life-his

Washington

Annotated bibliography on artificial recharge of ground water, 1955-67

Artificial ground-water recharge has become more important as water use by agriculture, industry, and municipalities increases. Water management agencies are increasingly interested in potential use of recharge for pollution abatement, waste-water disposal, and re-use and reclamation of locally available supplies. Research projects and theoretical analyses of operational recharge systems show increased scientific emphasis on the practice. Overall ground-water basin management systems generally now contain considerations of artificial recharge, whether by direct or indirect methods. Artificial ground-water recharge is a means of conserving surface runoff for future use in places where it would otherwise be lost, of protecting ground-water basins from salt-water encroachment along coastal areas, and of storing and distributing imported water. The biblio-graphy emphasizes technology; however, annotations of articles on waste-water reclamation, ground-water management and ground-water basin management are included. Subjects closely related to artificial recharge, including colloidal flow through porous media, field or laboratory instrumentation, and waste disposal by deep well injection are included where they specifically relate to potential recharge problems. Where almost the same material has been published in several journals, all references are included on the assumption that some publications may be more readily available to interested persons than others. Other publications, especially those of foreign literature, provided abstracts that were used freely as time limitations precluded obtaining and annotating all materials. Abstracts taken from published sources are noted. These are: "Abstracts of North American Geology," U.S. Department of the Interior, Geological Survey; "Abstracts of Recent Published Material on Foil and Water Conservation," ARS-41 series, Agricultural F.esearch Service, U.S. Department of Agriculture; "Water and1 Water Engineering," published by Fuel and Metallurgical Journals, Ltd., London, England; "Journal of Geophysical Research," American Geophysical Union, Washington, D.C.; "American Society of Civil Engineers Transactions," New York; "Selected Bibliography of Hydrology, United Kingdom, for the Years 1955-59," International Association of Scientific Hydrology; "Water Wells, an Annotated Bibliography," California University Water Resources Center Archives Report 13; "Re-use of Effluent in the Future With an Annotated Bibliography," by G. A. Whetstone, Texas Water Development Board Report 8, Austin, Tex.; "Journal of Water Pollution Control Federation," Washington, D.C.; and "A List of Selected Technical References on Artificial Recharge of Ground-Water Reservoirs," compiled by Roy W. Graves, Tulsa University, Information Services Department, Tulsa, Okla. Other notations are self-explanatory, and initials are those of the authors (DCS, DJG, WK). An unpublished compilation of recharge references by Arnon Arad sponsored by the United Nations Educational, Scientific, and Cultural Organization during a training period with the U.S. Geological Survey was also used. The bibliography is arranged alphabetically by author. Where an author has more than one publication, the arrangement is chronological; where an author has more than one publication in a given year, a, b, c, . . . are added. The indexing is by subject and geographic location. Each article was assigned the key words or phrases to best characterize its contents. Units of measure are as they were in the original article; abbreviations retained are generally those in common use such as mg/1 (milligrams per liter), ppm (parts per million), gpm (gallons per minute), km (kilometers), m (meters), cu m per hr (cubic meters p^r hour), cfs (cubic feet per second), me/1 (milliequivalents per liter), psi (pounds per square inch), BOD (biochemical oxygen demand), sq m (square meters), gpd (gallons per day), and mgd (million gallons per day). The bibliography was prepared because of the worldwide interest in the field of artificial recharge and the need for a single source of references to the literature published since 1954. The work is a sequel to the "Annotated Bibliography on Artificial Recharge of Ground Water Through 1954," by D. K. Todd, U.S. Geological Survey Water-Supply Paper 1477, published in 1959.

Water Supply Paper

Ecological requirements for pallid sturgeon reproduction and recruitment in the Missouri River: annual report 2011

The Comprehensive Sturgeon Research Project is a multiyear, multiagency collaborative research framework developed to provide information to support pallid sturgeon recovery and Missouri River management decisions. The project strategy integrates field and laboratory studies of sturgeon reproductive ecology, early life history, habitat requirements, and physiology. The project scope of work is developed annually with cooperating research partners and in collaboration with the U.S. Army Corps of Engineers, Missouri River Recovery—Integrated Science Program. The research consists of several interdependent and complementary tasks that engage multiple disciplines. The research tasks in the 2011 scope of work emphasized understanding of reproductive migrations and spawning of adult sturgeon, and hatch and drift of larvae. These tasks were addressed in three hydrologically and geomorphologically distinct parts of the Missouri River Basin: the Lower Missouri River downstream from Gavins Point Dam, the Upper Missouri River downstream from Fort Peck Dam and including downstream reaches of the Milk River, and the Lower Yellowstone River. The research is designed to inform management decisions related to channel re-engineering, flow modification, and pallid sturgeon population augmentation on the Missouri River, and throughout the range of the species. Research and progress made through this project are reported to the U.S. Army Corps of Engineers annually. This annual report details the research effort and progress made by the Comprehensive Sturgeon Research Project during 2011.

Missouri River

Comprehensive water quality of the Boulder Creek Watershed, Colorado, during high-flow and low-flow conditions, 2000

Executive Summary The Boulder Creek Watershed, Colorado, is 1160 square kilometers in area and ranges in elevation from 1480 to 4120 meters above sea level. Streamflow originates primarily as snowmelt near the Continental Divide, and thus discharge varies seasonally and annually (Chapter 1). Most of the water in Boulder Creek is diverted for domestic, agricultural, and industrial use. Some diverted water is returned to the creek as wastewater effluent and by ditch returns, and additional water enters as groundwater and by transbasin diversions. These diversions and returns lead to complex temporal and spatial variations in discharge. The variations in discharge, along with natural factors such as geology and climate, and anthropogenic factors such as wastewater treatment, agriculture, mining, and urbanization, can affect water chemistry. As with many watersheds in the American West, dependable water quality and sufficient water supply are issues facing local water managers and users. Detailed water-quality and sediment sampling allows the identification of sources and sinks of chemical constituents and an understanding of the processes at work in a river system. This study, the most comprehensive water-quality analysis performed for Boulder Creek to date, was a cooperative effort of the U.S. Geological Survey (USGS) and the city of Boulder. Geographic information systems and modeling programs were used to delineate watershed boundaries, land cover, and geology (Chapter 2). During high-flow (June 2000) and low-flow (October 2000) conditions, researchers evaluated 226 water-quality variables, including basic water-quality indicators (Chapter 3), major ions and trace elements (Chapter 4), wastewater-derived organic compounds (Chapter 5), and pesticides (Chapter 6). Discharge (Chapter 1) and bed-sediment particle size and mineralogy (Chapter 7) were also evaluated. This cooperative study was facilitated by the Boulder Area Sustainability Information Network (BASIN), which provides public access to environmental information about the Boulder Creek Watershed on a website, www.basin.org. In addition to the USGS and city of Boulder data, researchers at the Institute of Arctic and Alpine Research at the University of Colorado provided water chemistry data for the headwaters of North Boulder Creek, upstream of the reach of the USGS/city of Boulder sampling sites (Chapter 8). Snowmelt produces high flows in Boulder Creek in late spring to early summer (Chapter 1). Because precipitation falling in the headwaters is very dilute (specific conductance about 5 microsiemens per centimeter), most chemical constituents are present in lower concentrations during high flows (Chapters 3, 4, 5, 6, and 8). However, concentrations of some constituents, such as total suspended solids (Chapter 3) and organic carbon (Chapter 5), increase during the spring snowmelt flush. The upper basin, which consists of alpine, subalpine, montane, and foothills regions west of the mouth of Boulder Canyon, is underlain by Precambrian igneous and metamorphic rocks (Chapter 1). Major dissolved inorganic constituents in headwater sites were found to be enriched by factors of 10 to 20 relative to precipitation; this is consistent with minor weathering of the local crystalline bedrock (Chapter 4). Some anthropogenic input is observed in the headwaters; precipitation introduces nitrogen derived from fossil fuel combustion and agricultural activities (Chapter 8). The lower basin, which consists of the plains region east of the mouth of Boulder Canyon, is underlain by Mesozoic sedimentary rock and Quaternary alluvium, and has substantially more anthropogenic sources. Concentrations of most dissolved inorganic constituents increased in the lower basin. Differentiation between natural and anthropogenic sources of some dissolved constituents is difficult because both sources contribute to the water composition in this region. The increase of most major constituents (bicarbonate, calcium, chloride, magnesium, sodium, and sulfate) is consistent with weathering of the underlying sedimentary bedrock (Chapter 4). It is likely that anthropogenic loading of constituents in this reach occurs during storm events. Fecal coliform concentrations were variable and in some cases exceeded state standards, primarily during low-flow conditions (Chapter 3). Effluent from Boulder’s 75th Street Wastewater Treatment Plant (WWTP) has a substantial impact on the water chemistry of lower Boulder Creek. The WWTP increases the concentrations of nutrients such as nitrogen and phosphorus (Chapter 3), major ions and trace metals (Chapter 4), and organic carbon (Chapter 5) in Boulder Creek. The effluent contained a spike in gadolinium, a rare earth element that is ingested for magnetic resonance imaging as a contrasting agent and then excreted to the urban wastewater system. The effluent also contained trace organic compounds such as surfactants, pharmaceuticals, hormones (Chapter 5), and pesticides (Chapter 6), which also were detected at downstream Boulder Creek sites. Water chemistry of Boulder Creek downstream of the WWTP is largely controlled by the degree of dilution of the wastewater effluent, which varies depending on the baseflow of Boulder Creek, the volume of wastewater effluent, and depletion by agricultural diversions. Coal Creek, a tributary of Boulder Creek, contains wastewater effluent from four additional WWTPs, and increases the load of many constituents in Boulder Creek. In addition to the impact from wastewater effluent, lower Boulder Creek is affected by agricultural land use. Eleven of 84 analyzed pesticides were detected in Boulder Creek or its inflows, primarily in the eastern section of the watershed (Chapter 6). This collaborative study provides an in-depth evaluation of the hydrology, water chemistry, and sediment mineralogy of North Boulder Creek, Middle Boulder Creek, Boulder Creek, and major inflows. The detailed sampling and analysis in this report provide a baseline for future reference, as well as information on the effect of land use and geology on water chemistry.

Colorado

Evidence for Regional Stream Aggradation in the Central Oregon Coast Range during the Pleistocene-Holocene Transition

Low, nearly continuous terraces of similar age are present along streams in drainage basins that range in size from Drift Creek (190 km2) to the Umpqua River (11,800 km2) in the Oregon Coast Range. Radiocarbon ages from near the bose of fluvial sediments underlying these terraces are clustered at about 9000-11,000 14C yr B.P. Beveled bedrock surfaces (straths) that underlie the fluvial sediments are 1-8 m above summer stream levels and are present along most of the nontidal reaches of the rivers that we studied. Where exposed, the bedrock straths are overlain by 2-11 m of fluvial sediment that consists of a bottom-stratum (channel) facies of sandy pebble-cobble gravel and a top-stratum (overbank) facies of sandy silt or silt. Eight radiocarbon ages from the fluvial sediments allow correlation of the lowest continuous terrace over a wide area and thus indicate that a regional aggradation episode occurred in Coast Range drainage basins during the Pleistocene-Holocene transition. The cause of such widespread aggradation is unknown but may be related to climate-induced changes in the frequency of evacuation of colluvium from hollows, which are common in all drainage basins in the region.

Quaternary Research

Introduction to limnogeology: Progress, challenges, and opportunities: A tribute to Elizabeth Gierlowski-Kordesch

Elizabeth Gierlowski-Kordesch (1956–2016) was a leader and innovator in the specialty field of limnogeology since its beginnings in the late 1980s. Her excitement for field work and examining sediments was contagious, and she was always testing new research ideas. Beth would have been thrilled with the diversity of papers presented in the volume and the wide array of techniques used to determine the history, geochemistry, paleontology, and paleoclimate preserved in the sediments in basins that are located on every continent except Australia and Antarctica. She would also have been delighted that half the chapters were first authored by highly cited women scientists. Beth spent her career teaching, mentoring, conducting research with students and colleagues, and planning limnogeology conferences, books, and field trips. Her contributions span deep-time lakes from North and South America, Africa, Asia, and Europe, starting with her work on the Lower Jurassic East Berlin Formation where she conducted her Ph.D. research. Her work with Kerry Kelts at the University of Minnesota produced two books summarizing global lake research. These volumes are still used by many researchers, particularly as a starting point in their limnogeological studies. Her collaboration with Springer Nature® resulted in the series entitled Syntheses in Limnogeology , a publication that likely would not exist without her enthusiasm and perseverance. The papers in this second volume in the series describe a variety of Jurassic to modern lakes that range from fresh to hypersaline, shallow to deep, vary in size from <1 km 2 to 100s of km 2 , and are found in a number of tectonic settings. Various proxies, including microfossils and trace fossils and analyses of lacustrine sedimentology, stratigraphy, and stable isotopes are used to evaluate the sediment cores and stratigraphic sections to evaluate human and climate influences on the environment, the effects of tectonic, seismic, and volcanic activity, and variations in hydrology. The contributions in this volume reflect the diverse research that Beth conducted herself and we hope is a fitting honor to one of the founding scientists of Limnogeology.

Book chapter

Upscaling wetland methane emissions from the FLUXNET-CH4 Eddy Covariance Network (UpCH4 v1.0): Model development, network assessment, and budget comparison

Wetlands are responsible for 20%–31% of global methane (CH 4 ) emissions and account for a large source of uncertainty in the global CH 4 budget. Data-driven upscaling of CH 4 fluxes from eddy covariance measurements can provide new and independent bottom-up estimates of wetland CH 4 emissions. Here, we develop a six-predictor random forest upscaling model (UpCH4), trained on 119 site-years of eddy covariance CH 4 flux data from 43 freshwater wetland sites in the FLUXNET-CH4 Community Product. Network patterns in site-level annual means and mean seasonal cycles of CH 4 fluxes were reproduced accurately in tundra, boreal, and temperate regions (Nash-Sutcliffe Efficiency ∼0.52–0.63 and 0.53). UpCH4 estimated annual global wetland CH 4 emissions of 146 ± 43 TgCH 4 y −1 for 2001–2018 which agrees closely with current bottom-up land surface models (102–181 TgCH 4 y −1 ) and overlaps with top-down atmospheric inversion models (155–200 TgCH 4 y −1 ). However, UpCH4 diverged from both types of models in the spatial pattern and seasonal dynamics of tropical wetland emissions. We conclude that upscaling of eddy covariance CH 4 fluxes has the potential to produce realistic extra-tropical wetland CH 4 emissions estimates which will improve with more flux data. To reduce uncertainty in upscaled estimates, researchers could prioritize new wetland flux sites along humid-to-arid tropical climate gradients, from major rainforest basins (Congo, Amazon, and SE Asia), into monsoon (Bangladesh and India) and savannah regions (African Sahel) and be paired with improved knowledge of wetland extent seasonal dynamics in these regions. The monthly wetland methane products gridded at 0.25° from UpCH4 are available via ORNL DAAC ( https://doi.org/10.3334/ORNLDAAC/2253 ).

AGU Advances

Rapid extension recorded by cooling‐age patterns and brittle deformation, Naxos, Greece

The metamorphic core complex exposed as the island of Naxos in the Aegean Sea records an unusually complete sequence of structures developed as a result of continental extension. The structures formed during Miocene rise and cooling from ductile, upper amphibolite facies and anatectic conditions to brittle near‐surface conditions beneath the Naxos detachment fault. Top‐to‐the‐north ductile fabrics in the footwall, which initially developed during amphibolite facies prograde metamorphism, were overprinted by a succession of north directed, normal sense lower‐temperature brittle structures as the footwall was tectonically unloaded and unroofed. Pseudotachylite and cataclasite formation, brittle faulting, alteration, and erosion of the footwall occurred during continued slip and tectonic denudation. Neogene conglomerate and megabreccia, in part derived from exhumation of this footwall, lie structurally above the peripheral Naxos fault. Published K‐Ar and 40 Ar/ 39 Ar ages for hornblende, white mica, and biotite in the footwall decrease northwestward; apparent ages 17–50 Ma in the southeast correspond to areas of low metamorphic grade where preextension argon was partially retained. Published ages 16–10 Ma in higher‐grade rocks of the domal core in the north are cooling ages that for each of the three minerals show a component of younging in the NNE direction of extension. Assuming this is the direction of unroofing, we interpret the rate of this younging as the fault slip rate as the footwall rocks moved >20 km SSW relative to their hanging wall along the base of the Naxos detachment fault. The calculated rates of slip average 5–8 mm/yr, comparable to maximum rates reported in the Basin and Range province.

Naxos

Evidence for variable precipitation and discharge from Upper Cretaceous–Paleogene fluvial deposits of the Raton Basin, Colorado–New Mexico, U.S.A.

The Raton Basin of Colorado–New Mexico, USA, is the southeasternmost basin of the Laramide intraforeland province of North America. It hosts a thick succession (4.5 km or 15,000 ft) of Upper Cretaceous to Paleogene marine and continental strata that were deposited in response to the final regression of the Western Interior Seaway and the onset of Laramide intraforeland deformation. The Upper Cretaceous–Paleogene Raton and Poison Canyon formations were previously described as meandering river and braided river deposits that represented distal and proximal members of rivers that drained the basin-bounding Sangre de Cristo–Culebra uplift. We present new observations of fluvial-channel architecture that show that both formations contain the deposits of sinuous fluvial channels. However, fluvial channels of the Raton Formation formed in ever-wet environments and were affected by steady discharge, whereas channels of the overlying Poison Canyon Formation formed in drier environments and were affected by variable discharge. The apparent transition in fluvial discharge characteristics was coeval with the progradation of fluvial fans across the Raton Basin during the Paleocene, emanating from the ancestral Sangre de Cristo–Culebra uplift. The construction of fluvial fans, coupled with the sedimentary features observed within, highlights the dual control of Laramide deformation and early Cenozoic climatic patterns on the sedimentary evolution of the Raton Basin.

Colorado, New Mexico

Yellowstone Volcano Observatory 2019 annual report

The Yellowstone Volcano Observatory (YVO) monitors volcanic and hydrothermal activity associated with the Yellowstone magmatic system, conducts research into magmatic processes occurring beneath Yellowstone Caldera, and issues timely warnings and guidance related to potential future geologic hazards. This report summarizes the activities and findings of YVO during the year 2019, focusing on the Yellowstone volcanic system. Highlights of YVO research and related activities during 2019 included deploying a portable seismic array near Steamboat Geyser in Norris Geyser Basin that recorded signals from seven major water eruptions; deploying a semipermanent Global Positioning System array; surveying soil carbon dioxide flux and temperature and operating an eddy covariance system to make continuous measurements; collecting and analyzing water samples from Shoshone Geyser Basin, the outlets of Shoshone and Lewis Lakes, Cinder Pool in Norris Geyser Basin, and several locations along Obsidian Creek; exploring and documenting a new thermal area near Tern Lake that was discovered in 2018; measuring specific conductance along major rivers to determine the chloride flux and total heat output of the Yellowstone hydrothermal system; conducting an inventory of hydrothermal features in Norris Geyser Basin and Upper Geyser Basin as part of a park-wide project that began in 2018; and sampling of tree rings and silica sinter deposits in the Upper Geyser Basin to better understand hydrothermal activity over time. Continuing the pattern that started in 2018, Steamboat Geyser, in Norris Geyser Basin, erupted 48 times in 2019—a new record for a calendar year! Overall, however, noteworthy geyser activity in Yellowstone National Park was much reduced relative to the previous year. Thermal features on Geyser Hill in the Upper Geyser Basin had returned to their normal activity styles after Ear Spring’s September 2018 eruption and did not show any significant changes in 2019. Giant Geyser, also in the Upper Geyser Basin, did not experience any eruptions after March 2019. Seismicity was reduced relative to previous years, and deformation of Norris Geyser Basin, which started as uplift in 2015 and paused in late 2018, shifted to subsidence in late 2019. Overall subsidence of the caldera floor, ongoing since late 2015 or early 2016, continued at rates of a few centimeters (1–2 inches) per year.

Wyoming

A standard operating procedure for the preparation of purposely killed juvenile salmon used to test survival model assumptions

This document describes a standard operating procedure (SOP) for the preparation of purposely killed juvenile salmon, implanted with telemetry transmitters, to be released into rivers, lakes, or streams to test one of the survival model assumptions. Procedures for releases of purposely killed fish (hereinafter dead fish releases) were developed by staff from the U.S. Geological Survey’s Columbia River Research Laboratory, on the basis of laboratory experiments and practical experience with telemetry studies in the Columbia River Basin. Initially, we used extended exposure to high dose anesthetic baths to euthanize fish for dead fish releases. This approach was selected on the basis of euthanization procedures described in the literature for studies that required an effective and rapid procedure, such as stress physiology assessments. Ultimately, this technique was deemed insufficient because detection records suggested that some fish seemed to revive and continue their migration with limited effect. That is, the detection histories of dead fish were very similar to those of live fish. To overcome this challenge, we adapted our procedures to require a combination of euthanization procedures on individual fish to ensure that there was no opportunity for revival. A combination of euthanization procedures for dead fish releases was used in one study in Germany. This SOP has been used by the U.S. Geological Survey to test survival model assumptions in several field studies and has consistently performed well. In addition, limited laboratory tests were completed to ensure that no live juvenile salmon were found in holding tanks for 24 hours following the procedures described in this SOP.

Open-File Report

Presented abstracts from the U.S. Geological Survey 2020 Rocky Mountain Region Science Exchange (September 15–17, 2020)

The U.S. Geological Survey Rocky Mountain Region hosted scientists, managers, program coordinators, and leadership team members for a virtual Science Exchange during September 15–17, 2020. The Science Exchange had 216 registered participants and included 48 talks over the 3-day period. Invited speakers presented information about the novel U.S. Geological Survey Earth Monitoring, Analysis, and Prediction (EarthMAP) concept. Scientists showcased their research and participated in discussions related to the EarthMAP concept and EarthMAP applications. In addition, the Colorado River Basin Pilot Project, one of the first EarthMAP Pilot Projects, was unveiled during the Science Exchange. This report provides synopses of session objectives and corresponding abstracts that were presented along with author affiliations and email address of the lead author. In addition, web links are provided for related programs and projects, and associated publications are referenced.

Open-File Report

Prairie basin wetlands of the Dakotas: a community profile

This description of prairie basin wetlands of the Dakotas is part of a series of community profiles on ecologically important wetlands of national significance. The shallow wetlands of the Dakotas form the bulk of the portion of the Prairie Pothole Region lying within the United States. This region is famous as the producer of at least half of North America's waterfowl and an unknown, but large, proportion of other prairie-dwelling marsh and aquatic birds.The wetlands described here lie in relatively small, shallow basins that vary greatly in their ability to maintain surface water, and in their water chemistry, which varies from fresh to hypersaline. These wetlands occur in a wide variety of hydrological settings, in an area where annual and seasonal precipitation varies greatly in form and amount. Thus the presence of surface water in these wetlands is largely unpredictable. Superimposed on these phenomena are the effects of a variety of land uses, including pasture, cultivation, mechanical forage removal, idle conditions and burning. All those factors greatly affect the plant and animal communities found in these basins.This profile covers lacustrine and palustrine basins with temporarily flooded, seasonally flooded, and semipermanently flooded water regimes. Basins with these water regimes compose about 90% of the basins in the Prairie Pothole Region of the Dakotas. This profile outlines the wetland subsystems, classes and subclasses that occur in these basins, and provides a useful reference to their geologic, climatic, hydrologic, and pedologic setting.Detailed information on the biotic environment of the wetlands dealt with in this profile will be useful to scientists and resource managers. Special recognition is paid to the macrophyte and invertebrate communities, which have dynamic qualities found in few other of the world's wetland ecosystems.The most noteworthy animal inhabitants of these basins are waterfowl, which are a resource of international concern. Because of the importance of this resource, much research on the habitat use and feeding ecology of breeding waterfowl has been conducted in the region. These topics receive special attention in this profile.The Prairie Pothole Region is a major world supplier of cereal grains. Consequently, wetlands in the region are often drained for crop production or otherwise cropped when water conditions permit. These practices degrade the value of wetlands for most species of wildlife and conflict with the aims of conservationists. The subject of human uses and impacts to prairie wetlands is thus an important part of this profile.

Biological Report

Lunar highlands volcanism implications from Luna 20 and Apollo 16

Highlands materials sampled at the Apollo 16 and Luna 20 sites represent units of distinctive morphology that are widespread on the lunar nearside. Samples from the Apollo 16 site represent hilly and furrowed materials of the Descartes highlands and Cayley Formation. Materials were collected by Luna 20 from terrain resembling the Descartes terrain. Most photogeologic interpretations of these units favored volcanic origins, but the samples fail to support this interpretation. Luna 20 soil fragments are mainly glassy microbreccia with lithic inclusions of fine-grained hornfels; less than 3 percent of the fragments have textures of volcanic rocks, and most of these are likely crystalline products of impact melting. Apollo 16 soils formed on ejecta derived from a plutonic anorthosite-norite-troctolite suite. The similarity of Luna 20 soils indicates that these too formed as regolith on ejecta of anorthosite-norite-troctolitc composition. Interpretation of the samples from the two locations now suggests that hilly and furrowed terrains, previously thought to be of volcanic origin, are impact ejecta; in view of the plutonic nature of the source rocks and their extensive fusion and metamorphism, it is likely that the ejecta were derived from multiring basins. At one point, the Apollo 16 site, the Cayley Formation is composed of basin ejecta.

Journal of Research of the U.S. Geological Survey

Hydrological, geomorphological, and chemical effects of Hurricane Andrew on coastal marshes of Louisiana

Hydrological conditions are reported for the hurricane-induced storm surge at marsh sites in Terrebonne and Barataria Basins. There was a 6 hour or greater delay in the arrival of the storm surge at interior marsh sites compared to coastal locations. A water surge of about 1.5 m with a salinity of 10–15‰ was recorded at an intermediate salinity marsh site in Terrebonne Basin where significant geomorphological changes occurred with lateral movement and stacking of marsh vegetation and sediment, erosion, and the conversion of wetlands to open water. A residual salt wedge attributed to the storm surge was detected in sediments at this intermediate marsh site about 55 days after the hurricane. In the pore water, at 30 cm in depth, there were increases in alkalinity, ammonia, phosphate, and manganese, but not iron or sulfide, although there was a significant depletion of sulfur with respect to chloride. The increases in concentration of these species in the pore water suggests that there was an increase in organic matter decomposition. Although increases in sulfide phytotoxicity were not obvious, the residual salinity of pore water may influence wetland loss through longer-term impacts on macrophyte production. Storm-induced sediment deposition, which will help ameliorate wetland loss, was observed at a salt marsh site in Terrebonne Basin.

Louisiana

Diet of burbot and implications for sampling

Burbot (Lota lota) are an apex piscivore that were illegally introduced to the Green River drainage, Wyoming, raising concerns for the conservation and management of fishes throughout the basin. However, relatively little is known about the diet of non-native burbot. The objectives of this research were to characterize diet composition of burbot and identify differences in diet composition as a function of sampling gear. Diet composition was characterized using frequency of occurrence, percent by number, and percent by weight to identify the importance of each prey type to burbot. Diet composition was compared across gears to identify the relationship between gear and diet. Fishes were present in the stomach contents of nearly all burbot sampled and composed 62–100 percent of the stomach contents of burbot greater than 300 mm. Prey diversity was greatest in diets of burbot sampled with small-mesh hoop nets. Results from the current study provide important information on the diet of non-native burbot and highlight the potential influence of gear on diet studies.

Wyoming

Ecological requirements for pallid sturgeon reproduction and recruitment in the Missouri River—Annual report 2014

The Comprehensive Sturgeon Research Project is a multiyear, multiagency collaborative research framework developed to provide information to support pallid sturgeon recovery and Missouri River management decisions. The project strategy integrates field and laboratory studies of sturgeon reproductive ecology, early life history, habitat requirements, and physiology. The project scope of work is developed annually with collaborating research partners and in cooperation with the U.S. Army Corps of Engineers, Missouri River Recovery Program–Integrated Science Program. The project research consists of several interdependent and complementary tasks that involve multiple disciplines. The project research tasks in the 2014 scope of work emphasized understanding of reproductive migrations and spawning of adult pallid sturgeon and hatch and drift of larvae. These tasks were addressed in three hydrologically and geomorphologically distinct parts of the Missouri River Basin: the Lower Missouri River downstream from Gavins Point Dam, the Upper Missouri River downstream from Fort Peck Dam and downstream reaches of the Milk River, and the Lower Yellowstone River. The project research is designed to inform management decisions related to channel re-engineering, flow modification, and pallid sturgeon population augmentation on the Missouri River and throughout the range of the species. Research and progress made through this project are reported to the U.S. Army Corps of Engineers annually. This annual report details the research effort and progress made by the Comprehensive Sturgeon Research Project during 2014.

Missouri, Montana, Nebraska