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USGS2012

Telemetry techniques: A user guide for fisheries research

Telemetry provides a powerful and flexible tool for studying fish and other aquatic animals, and its use has become increasingly commonplace. However, telemetry is gear intensive and typically requires more specialized knowledge and training than many other field techniques. As with other scientific methods, collecting good data is dependent on an understanding of the underlying principles behind the approach, knowing how to use the equipment and techniques properly, and recognizing what to do with the data collected. This book provides a road map for using telemetry to study aquatic animals, and provides the basic information needed to plan, implement, and conduct a telemetry study under field conditions. Topics include acoustic or radio telemetry study design, tag implantation techniques, radio and acoustic telemetry principles and case studies, and data management and analysis. Chapters are written by biologists, technicians, and engineers from the private, academic, and government sectors, with decades of experience using these technologies.

Book↗
USGS2012

Preface

Telemetry provides a powerful and flexible tool for studying fish and other aquatic animals, and its use has become increasingly commonplace. However, telemetry is gear intensive and typically requires more specialized knowledge and training than many other field techniques. As with other scientific methods, collecting good data is dependent on an understanding of the underlying principles behind the approach, knowing how to use the equipment and techniques properly, and recognizing what to do with the data collected. This book provides a road map for using telemetry to study aquatic animals, and provides the basic information needed to plan, implement, and conduct a telemetry study under field conditions. Topics include acoustic or radio telemetry study design, tag implantation techniques, radio and acoustic telemetry principles and case studies, and data management and analysis.

Book chapter↗
USGS2012

Use of acoustic telemetry to evaluate survival and behavior of juvenile salmonids at hydroelectric dams: A case study from Rocky Reach Dam, Columbia River, USA: Chapter 8.1

Telemetry provides a powerful and flexible tool for studying fish and other aquatic animals, and its use has become increasingly commonplace. However, telemetry is gear intensive and typically requires more specialized knowledge and training than many other field techniques. As with other scientific methods, collecting good data is dependent on an understanding of the underlying principles behind the approach, knowing how to use the equipment and techniques properly, and recognizing what to do with the data collected. This book provides a road map for using telemetry to study aquatic animals, and provides the basic information needed to plan, implement, and conduct a telemetry study under field conditions. Topics include acoustic or radio telemetry study design, tag implantation techniques, radio and acoustic telemetry principles and case studies, and data management and analysis. Chapters are written by biologists, technicians, and engineers from the private, academic, and government sectors, with decades of experience using these technologies.

Washington↗
USGS1993

Preliminary studies of the CHIM electrogeochemical method at the Kokomo Mine, Russell Gulch, Colorado

The CHIM electrogeochemical exploration technique was developed in the former Soviet Union about 20 years ago and is claimed to be effective in exploration for concealed mineral deposits that are not detectable by other geochemical or geophysical techniques. The method involves providing a high-voltage direct current to an anode and an array of special collector cathodes. Cations mobile in the electric field are collected at the cathodes and their concentrations determined. The U.S. Geological Survey started a study of the CHIM method by conducting tests over a precious- and base-metal-bearing quartz vein covered with 3 m of colluvial soil and weathered bedrock near the Kokomo Mine, Colorado. The tests show that the CHIM method gives better definition of the vein than conventional soil geochemistry based on a total-dissolution technique. The CHIM technique gives reproducible geochemical anomaly patterns, but the absolute concentrations depend on local site variability as well as temporal variations. Weak partial dissolutions of soils at the Kokomo Mine by an enzyme leach, a dilute acetic acid leach, and a dilute hydrochloric acid leach show results comparable to those from the CHIM method. This supports the idea that the CHIM technique is essentially a weak in-situ partial extraction involving only ions able to move in a weak electric field.

Journal of Geochemical Exploration↗
USGS2015

Factors affecting individual foraging specialization and temporal diet stability across the range of a large “generalist” apex predator

Individual niche specialization (INS) is increasingly recognized as an important component of ecological and evolutionary dynamics. However, most studies that have investigated INS have focused on the effects of niche width and inter- and intraspecific competition on INS in small-bodied species for short time periods, with less attention paid to INS in large-bodied reptilian predators and the effects of available prey types on INS. We investigated the prevalence, causes, and consequences of INS in foraging behaviors across different populations of American alligators ( Alligator mississippiensis ), the dominant aquatic apex predator across the southeast US, using stomach contents and stable isotopes. Gut contents revealed that, over the short term, although alligator populations occupied wide ranges of the INS spectrum, general patterns were apparent. Alligator populations inhabiting lakes exhibited lower INS than coastal populations, likely driven by variation in habitat type and available prey types. Stable isotopes revealed that over longer time spans alligators exhibited remarkably consistent use of variable mixtures of carbon pools (e.g., marine and freshwater food webs). We conclude that INS in large-bodied reptilian predator populations is likely affected by variation in available prey types and habitat heterogeneity, and that INS should be incorporated into management strategies to efficiently meet intended goals. Also, ecological models, which typically do not consider behavioral variability, should include INS to increase model realism and applicability.

Oecologia↗
USGS2014

Spatially explicit modeling to evaluate regional stream water quality

Spatially referenced regressions on watershed attributes (SPARROW) models have been developed and applied over the past two decades to address the need for large-scale, spatially explicit information on stream water quality conditions. The strength of SPARROW models is that they describe the primary environmental processes that affect the supply and transport of contaminant mass in watersheds, based on the use of stream monitoring and geospatial data to statistically estimate model parameters. SPARROW models were first applied at the scale of the conterminous US, but their use has grown through applications in many smaller regions of the US and in other countries. Recent developments include a web-based decision support system that provides open access to model results without the assistance of technical experts or special software. As it is highlighted in this chapter, SPARROW modeling provides a flexible framework for studying many aspects of water quality to support both research and resource management objectives.

Book chapter↗
USGS2011

Interface between black-footed ferret research and operational conservation

Questions and problems that emerged during operational conservation of black-footed ferrets ( Mustela nigripes ) have been addressed by a wide variety of studies. Early results from such studies often were communicated orally during meetings of recovery groups and in written form using memoranda, unpublished reports, and theses. Typically, implementation of results preceded their publication in widely distributed journals. Many of these studies eventually were published in journals, and we briefly summarize the contents of 8 volumes and special features of journals that have been dedicated to the biology of ferrets and issues in ferret recovery. This year marks the 30th anniversary of rediscovery of the black-footed ferret, and the 7 papers of the following Special Feature summarize data collected over nearly that span of time.

Journal of Mammalogy↗
USGS1991

Geology of caves

A cave is a natural opening in the ground extending beyond the zone of light and large enough to permit the entry of man. Occurring in a wide variety of rock types and caused by widely differing geological processes, caves range in size from single small rooms to intercorinecting passages many miles long. The scientific study of caves is called speleology (from the Greek words spelaion for cave and logos for study). It is a composite science based on geology, hydrology, biology, and archaeology, and thus holds special interest for earth scientists of the U.S. Geological Survey.

General Interest Publication↗
USGS2011

The winter diet of short-eared owls in subtropical Texas: Do southern diets provide evidence of opportunity?

Winter diet of the Short-eared Owl ( Asio flammeus ) in Texas is little known. We investigated the diet of Short-eared Owls wintering in McMullen County, in subtropical Texas, by analyzing the contents of 129 pellets collected over two winters (28 November 2007 to 22 February 2008 and 11 December 2008 to 11 February 2009) and conducted a latitudinal-based comparison of published diet studies of Short-eared Owls. In southern Texas, we recovered the remains of 162 prey items, 98% of which were vertebrates. Hispid cotton rats ( Sigmodon hispidus ) were the most important prey species in terms of percent of total number (67%) and percent of total biomass (87%). Most (86%) Short-eared Owl diet studies (based on ≥100 pellets) have been conducted north of 35°N, with only six studies, including the present study, conducted at or south of 35°N latitude. Voles (primarily Microtus spp.) were the dominant prey in North American studies (71%), but microtines were not the dominant prey in any of the six studies conducted south of 35°N latitude. We suggest that Short-eared Owls do not specialize on microtines, as is often implied, but rather depend on rodents with cyclic populations, such as the hispid cotton rat in southern areas.

Texas↗
USGS1999

Klamath-Siskiyou herpetofauna: Biogeographic patterns and conservation strategies

The Klamath-Siskiyou region of southwest Oregon and northwest California (USA) has some of the most complex landscape mosaics and plant communities in western North America, reflecting its marked diversity of precipitation and topography. With 38 native species of amphibians and reptiles, the Klamath-Siskiyou region has the most species-rich herpetofauna of any similarly sized mountain range in the Pacific Northwest. Although it is a biodiversity 'hot spot,' there are only two endemic species, both salamanders, in the Klamath-Siskiyou region. High diversity is due to the overlap of two major biogeographic groups: the Arcto- (= northern) and Madro- (= southern) Tertiary herpetofaunas. Many of the amphibians in the Klamath-Siskiyou region are restricted to specialized habitats. Much of our knowledge about the biology of the regional fauna is based on studies elsewhere. Distributional surveys and ecological research are needed to address how the herpetofauna responds to timber harvest and other human activities that may reduce populations and increase fragmentation of suitable habitats. Conservation of the region's diverse herpetofauna should emphasize strategies directed at habitat specialists and species at the latitudinal limits of their ranges.

California, Oregon↗
USGS2000

Assessing the Kansas water-level monitoring program: An example of the application of classical statistics to a geological problem

Geologists may feel that geological data are not amenable to statistical analysis, or at best require specialized approaches such as nonparametric statistics and geostatistics. However, there are many circumstances, particularly in systematic studies conducted for environmental or regulatory purposes, where traditional parametric statistical procedures can be beneficial. An example is the application of analysis of variance to data collected in an annual program of measuring groundwater levels in Kansas. Influences such as well conditions, operator effects, and use of the water can be assessed and wells that yield less reliable measurements can be identified. Such statistical studies have resulted in yearly improvements in the quality and reliability of the collected hydrologic data. Similar benefits may be achieved in other geological studies by the appropriate use of classical statistical tools.

The Compass: Earth Science Journal of Sigma Gamma ↗
USGS1975

Adjustment of logarithmic flood-frequency statistics for gaged California streams to minimize the time sampling error

Methods for adjusting logarithmic flood-frequency statistics for gaged streams to minimize the time sampling error that is inherent in short records are discussed. Statistical procedures for adjusting the mean and standard deviation of a short-term array of annual peak discharges are already well established; two standard sets of equations for utilizing the additional information contained in longer records of peak discharge observed at nearby gaging stations are given. A standard method for adjusting the coefficient of skew does not exist, and consequently a special technique for estimating the long-term value of that statistic was developed for this study. Regional equations were developed that relate the logarithmic skew coefficient to logarithmic transformations of mean annual basinwide precipitation and mean annual peak discharge per square mile. The technique appears to be satisfactory for use in the greater part of California, where over large areas the peak discharge in any year is usually associated with a single widespread general storm or with a series of such storms where snowmelt runoff is involved rather than with localized precipitation events.

Journal of Research of the U.S. Geological Survey↗
USGS2023

Hawksbill and green turtle niche overlap in a marine protected area, US Virgin Islands

Studying how species interact with their environment and other co-occurring species are 2 main aspects of ecology. For marine turtles, ocean currents drive migratory routes and may determine the location of surrounding foraging grounds. As a result, circumglobal species like the hawksbill turtle Eretmochelys imbricata and green turtle Chelonia mydas adapt to diverse foraging habitats and employ varied feeding strategies. Dietary specializations may reduce competition for available food and space resources between co-occurring hawksbill and green turtles in US Virgin Island shallow reef habitats. This study analyzed isotopic data from immature hawksbill (n = 49; range: 18.7-49.8 cm straight carapace length [SCL]) and green turtles (n = 225; range: 24.1-69.4 cm SCL) to examine foraging niche. We used nitrogen stable isotope (δ 15 N) values as an indicator of trophic positioning and carbon stable isotope (δ 13 C) values as a habitat variable. Turtles were hand-captured across an 8 yr period (2012-2019), which facilitated the distinction of isotopic patterns in both the environment and among individual turtles. Understanding variations in habitat, community dynamics, and dietary consumption allowed us to utilize a 5 point framework to translate isotopic space to foraging niche. We found that the site’s relatively stable environmental conditions allow for isotopic overlap between hawksbill and green turtles despite the specialized feeding strategies each species employs. We also underscore the need to evaluate species-specific tissue turnover estimates as evidenced by the influence of tropical storms on recaptured turtle isotopic signatures. These findings inform our understanding of resource use for these imperiled species at our study site and are useful for future global isotopic comparisons.

U.S. Virgin Islands↗
USGS2022

Dispersal limitations increase vulnerability under climate change for reptiles and amphibians in the southwestern United States

Species conservation plans frequently rely on information that spans political and administrative boundaries, especially when predictions are needed of future habitat under climate change; however, most species conservation plans and their requisite predictions of future habitat are often limited in geographical scope. Moreover, dispersal constraints for species of concern are not often incorporated into distribution models, which can result in overly optimistic predictions of future habitat. We used a standard modeling approach across a suite of 23 taxa of amphibians and reptiles in the North American deserts (560,024 km 2 across 13 ecoregions) to assess impacts of climate change on habitat and combined landscape population dispersal simulations with species distribution modeling to reduce the risk of predicting future habitat in areas that are not available to species given their dispersal abilities. We used 3 general circulation models and 2 representative concentration pathways (RCPs) to represent multiple scenarios of future habitat potential and assess which study species may be most vulnerable to changes forecasted under each climate scenario. Amphibians were the most vulnerable taxa, but the most vulnerable species tended to be those with the lowest dispersal ability rather than those with the most specialized niches. Under the most optimistic climate scenario considered (RCP 2.6; a stringent scenario requiring declining emissions from 2020 to near zero emissions by 2100), 76% of the study area may experience a loss of >20% of the species examined, while up to 87% of the species currently present may be lost in some areas under the most pessimistic climate scenario (RCP 8.5; a scenario wherein greenhouse gases continue to increase through 2100 based on trajectories from the mid-century). Most areas with high losses were concentrated in the Arizona and New Mexico Plateau ecoregion, the Edwards Plateau in Texas, and the Southwestern Tablelands in New Mexico and Texas, USA. Under the most pessimistic climate scenario, all species are predicted to lose some existing habitat, with an average of 34% loss of extant habitat across all species. Even under the most optimistic scenario, we detected an average loss of 24% of extant habitat across all species, suggesting that changing climates may influence the ranges of reptiles and amphibians in the Southwest.

Arizona, California, Nevada, New Mexico, Texas, Ut↗
USGS2005

Biology and conservation of Xantus's Murrelet: Discovery, taxonomy and distribution

The biology of Xantus's Murrelets Synthliboramphus hypoleucus is similar in many respects to better-studied Ancient Murrelets S. antiquus, especially regarding morphology and the species' precocial mode of post-hatching development. It nests mainly in rock crevices but also under shrubs on islands in southern California, United States, and northwestern Baja California, Mexico (27 o N to 34 o N). The species was discovered in 1859 by Janos Xantus. Two subspecies ( S. h. hypoleucus and S. h. scrippsi ) are recognized that show limited evidence of interbreeding. At sea, closely related Craveri's Murrelets S. craveri co-occur with Xantus's Murrelets off California and western Baja California during half the year, but the former species has a discrete breeding range in the Gulf of California, Mexico. Breeding was documented at 13 island groups between 1863 and 1976. Post-breeding dispersal as far north as central British Columbia, Canada (c. 52 o N) was observed in the 1940s to 1960s. A few Xantus's Murrelets disperse south of breeding colonies to Magdalena Bay, Baja California (c. 24 o N). The southernmost record is the type specimen collected by Xantus near Cabo San Lucas, Baja California (c. 23 o N). Chief threats to this species include introduced mammalian predators on breeding islands, heightened predation by natural predators in human-modified island habitats, and oil pollution. In January 2005, a Pacific Seabird Group special symposium, "Biology and conservation of the Xantus's Murrelet," highlighted conservation concerns and promoted publication of recent studies of this little-known alcid, with nine symposium papers published in this issue of Marine Ornithology. Much of what we know about Xantus's Murrelets has been learned in recent years, and many aspects of biology remain to be described.

Marine Ornithology: Journal of Seabird Research an↗
USGS2015

Moving environmental DNA methods from concept to practice for monitoring aquatic macroorganisms

The discovery that macroorganisms can be detected from their environmental DNA (eDNA) in aquatic systems has immense potential for the conservation of biological diversity. This special issue contains 11 papers that review and advance the field of eDNA detection of vertebrates and other macroorganisms, including studies of eDNA production, transport, and degradation; sample collection and processing to maximize detection rates; and applications of eDNA for conservation using citizen scientists. This body of work is an important contribution to the ongoing efforts to take eDNA detection of macroorganisms from technical breakthrough to established, reliable method that can be used in survey, monitoring, and research applications worldwide. While the rapid advances in this field are remarkable, important challenges remain, including consensus on best practices for collection and analysis, understanding of eDNA diffusion and transport, and avoidance of inhibition in sample collection and processing. Nonetheless, as demonstrated in this special issue, eDNA techniques for research and monitoring are beginning to realize their potential for contributing to the conservation of biodiversity globally.

Biological Conservation↗