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USGS2024

A new era of genetic diversity conservation through novel tools and accessible data

As the foundation of biodiversity, genetic diversity is necessary for species to adapt to ecological changes, such as impacts from disease, invasive species, and climate change. Genetic diversity also supports ecosystem resilience and societal innovations. Unfortunately, declines in genetic diversity have been frequently observed in populations of wild and domestic species. Yet the field of population genetics is often neglected in national and global environmental policy and has been underutilized in biodiversity monitoring and conservation action.

Frontiers in Ecology and the Environment↗

USGS2023

Indicators of the effects of climate change on freshwater ecosystems

Freshwater ecosystems, including lakes, streams, and wetlands, are responsive to climate change and other natural and anthropogenic stresses. These ecosystems are frequently hydrologically and ecologically connected with one another and their surrounding landscapes, thereby integrating changes throughout their watersheds. The responses of any given freshwater ecosystem to climate change depend on the magnitude of climate forcing, interactions with other anthropogenic and natural changes, and the characteristics of the ecosystem itself. Therefore, the magnitude and manner in which freshwater ecosystems respond to climate change are difficult to predict a priori. We present a conceptual model to elucidate how freshwater ecosystems are altered by climate change. We identify eleven indicators that describe the response of freshwater ecosystems to climate change, discuss their potential value and limitations, and describe supporting measurements. Indicators are organized in three interrelated categories: hydrologic, water quality, and ecosystem structure and function. The indicators are supported by data sets with a wide range of temporal and spatial coverage, and they inform important scientific and management needs. Together, these indicators improve the understanding and management of the effects of climate change on freshwater ecosystems.

Climate Change↗

USGS2017

Climate change refugia and habitat connectivity promote species persistence

Background Climate change refugia, areas buffered from climate change relative to their surroundings, are of increasing interest as natural resource managers seek to prioritize climate adaptation actions. However, evidence that refugia buffer the effects of anthropogenic climate change is largely missing. Methods Focusing on the climate-sensitive Belding’s ground squirrel ( Urocitellus beldingi ), we predicted that highly connected Sierra Nevada meadows that had warmed less or shown less precipitation change over the last century would have greater population persistence, as measured by short-term occupancy, fewer extirpations over the twentieth century, and long-term persistence measured through genetic diversity. Results Across California, U. beldingi were more likely to persist over the last century in meadows with high connectivity that were defined as refugial based on a suite of temperature and precipitation factors. In Yosemite National Park, highly connected refugial meadows were more likely to be occupied by U. beldingi . More broadly, populations inhabiting Sierra Nevada meadows with colder mean winter temperatures had higher values of allelic richness at microsatellite loci, consistent with higher population persistence in temperature-buffered sites. Furthermore, both allelic richness and gene flow were higher in meadows that had higher landscape connectivity, indicating the importance of metapopulation processes. Conversely, anthropogenic refugia, sites where populations appeared to persist due to food or water supplementation, had lower connectivity, genetic diversity, and gene flow, and thus might act as ecological traps. This study provides evidence that validates the climate change refugia concept in a contemporary context and illustrates how to integrate field observations and genetic analyses to test the effectiveness of climate change refugia and connectivity. Conclusions Climate change refugia will be important for conserving populations as well as genetic diversity and evolutionary potential. Our study shows that in-depth modeling paired with rigorous fieldwork can identify functioning climate change refugia for conservation.

California↗

USGS2011

Impacts of past climate and sea level change on Everglades wetlands: placing a century of anthropogenic change into a late-Holocene context

We synthesize existing evidence on the ecological history of the Florida Everglades since its inception ~7 ka (calibrated kiloannum) and evaluate the relative impacts of sea level rise, climate variability, and human alteration of Everglades hydrology on wetland plant communities. Initial freshwater peat accumulation began between 6 and 7 ka on the platform underlying modern Florida Bay when sea level was ~6.2 m below its current position. By 5 ka, sawgrass and waterlily peats covered the area bounded by Lake Okeechobee to the north and the Florida Keys to the south. Slower rates of relative sea level rise ~3 ka stabilized the south Florida coastline and initiated transitions from freshwater to mangrove peats near the coast. Hydrologic changes in freshwater marshes also are indicated ~3 ka. During the last ~2 ka, the Everglades wetland was affected by a series of hydrologic fluctuations related to regional to global-scale fluctuations in climate and sea level. Pollen evidence indicates that regional-scale droughts lasting two to four centuries occurred ~1 ka and ~0.4 ka, altering wetland community composition and triggering development of characteristic Everglades habitats such as sawgrass ridges and tree islands. Intercalation of mangrove peats with estuarine muds ~1 ka indicates a temporary slowing or stillstand of sea level. Although sustained droughts and Holocene sea level rise played large roles in structuring the greater Everglades ecosystem, twentieth century reductions in freshwater flow, compartmentalization of the wetland, and accelerated rates of sea level rise had unprecedented impacts on oxidation and subsidence of organic soils, changes/loss of key Everglades habitats, and altered distribution of coastal vegetation.

Florida↗

USGS2021

Extreme events trigger terrestrial and marine ecosystem collapses: A tale of two regions

We outline the multiple, cross-scale, and complex consequences of terrestrial and marine ecosystem heatwaves in two regions on opposite sides of the planet: the southwestern USA and southwestern Australia, both encompassing Global Biodiversity Hotspots, and where ecosystem collapses or features of it have occurred in the past two decades. We highlight ecosystem shifts that have clearly demonstrated a substantial change from a baseline state over time, although not necessarily across their entire distribution, with evidence of collapse at local scales. Responses to temperature extremes, such as heatwaves, encompass processes at all scales, including population level (e.g. altered demography such as survival, recruitment, and fecundity, together resulting in structural changes), community level (e.g. species compositional shifts), and ecosystem level (e.g. carbon loss), as well as physical properties altered by vegetation loss (e.g. microclimate, fire behaviour on land). These changes impact all trophic levels with foundational species losses (such as seagrasses, kelp, and trees), flowing through to vertebrates (such as sea turtles, penguins, and cockatoos). Where extensive collapse has occurred, shifts in microclimate could affect important biosphere-to-atmosphere feedbacks including fluxes of energy, carbon, and water. Such extensive changes usually do not occur in isolation and frequently interact with other disturbance processes such as fire, storms, pathogen and pest outbreaks, and anthropogenic stressors. Interactions may alter the likelihood, extent, or severity of subsequent disturbances (linked disturbances) as well as condition the ecological response and recovery (compound disturbances). In addition, if ecosystem collapse is extensive enough (e.g. tree die-off), those changes also can impact climate and ecosystems elsewhere via ecoclimate teleconnections. Increasing rates of climatic extremes will drive a host of direct and indirect feedbacks certain to produce large-scale shifts in ecological functioning at unprecedented rates. Understanding how, why, and where these shifts will occur will be critical for effective ecosystem management and climate change mitigation.

Book chapter↗

USGS2023

Weather influences survival probability in two coexisting mammals directly and indirectly via competitive asymmetry

Ecologists have studied the role of interspecific competition in structuring ecological communities for decades. Differential weather effects on animal competitors may be a particularly important factor contributing to the outcome of competitive interactions, though few studies have tested this hypothesis in free-ranging animals. Specifically, weather might influence competitive dynamics by altering competitor densities and/or per-capita competitive effects on demographic vital rates. We used a 9-year data set of marked individuals to test for direct and interactive effects of weather and competitor density on survival probability in two coexisting mammalian congeners: Columbian ground squirrels ( Urocitellus columbianus ) and northern Idaho ground squirrels ( Urocitellus brunneus ). Ambient temperature and precipitation influenced survival probability in both species, but the effects of weather differed between the two species. Moreover, density of the larger Columbian ground squirrel negatively impacted survival probability in the smaller northern Idaho ground squirrel (but not vice versa), and the strength of the negative effect was exacerbated by precipitation. That is, cooler, wetter conditions benefited the larger competitor to the detriment of the smaller species. Our results suggest weather-driven environmental variation influences the competitive equilibrium between ecologically similar mammals of differential body size. Whether future climate change leads to the competitive exclusion of either species will likely depend on the mechanism(s) explaining the coexistence of these competing species. Divergent body size and, hence, differences in thermal tolerance and giving up densities offer potential explanations for the weather-dependent competitive asymmetry we documented, especially if the larger species competitively excludes the smaller species from habitat patches of shared preference via interference.

Idaho↗

USGS2016

Foreword: The dynamics of change in Alaska’s boreal forests: Resilience and vulnerability in response to climate warming

Long-term research by the Bonanza Creek (BNZ) Long Term Ecological Research (LTER) program has documented natural patterns of interannual and successional variability of the boreal forest in interior Alaska against which we can detect changes in system behavior. Between 2004 and 2010 the BNZ LTER program focused on understanding the dynamics of change through studying the resilience and vulnerability of Alaska's boreal forest in response to climate warming. The overarching question in this endeavor has been “How are boreal ecosystems responding, both gradually and abruptly, to climate warming, and what new landscape patterns are emerging?”

Alaska↗

USGS2012

Modeling responses of large-river fish populations to global climate change through downscaling and incorporation of predictive uncertainty

Climate change operates over a broad range of spatial and temporal scales. Understanding its effects on ecosystems requires multi-scale models. For understanding effects on fish populations of riverine ecosystems, climate predicted by coarse-resolution Global Climate Models must be downscaled to Regional Climate Models to watersheds to river hydrology to population response. An additional challenge is quantifying sources of uncertainty given the highly nonlinear nature of interactions between climate variables and community level processes. We present a modeling approach for understanding and accomodating uncertainty by applying multi-scale climate models and a hierarchical Bayesian modeling framework to Midwest fish population dynamics and by linking models for system components together by formal rules of probability. The proposed hierarchical modeling approach will account for sources of uncertainty in forecasts of community or population response. The goal is to evaluate the potential distributional changes in an ecological system, given distributional changes implied by a series of linked climate and system models under various emissions/use scenarios. This understanding will aid evaluation of management options for coping with global climate change. In our initial analyses, we found that predicted pallid sturgeon population responses were dependent on the climate scenario considered.

Missouri River↗

USGS2006

Understanding the genetic effects of recent habitat fragmentation in the context of evolutionary history: Phylogeography and landscape genetics of a southern California endemic Jerusalem cricket (Orthoptera: Stenopelmatidae: Stenopelmatus)

Habitat loss and fragmentation due to urbanization are the most pervasive threats to biodiversity in southern California. Loss of habitat and fragmentation can lower migration rates and genetic connectivity among remaining populations of native species, reducing genetic variability and increasing extinction risk. However, it may be difficult to separate the effects of recent anthropogenic fragmentation from the genetic signature of prehistoric fragmentation due to previous natural geological and climatic changes. To address these challenges, we examined the phylogenetic and population genetic structure of a flightless insect endemic to cismontane southern California, Stenopelmatus 'mahogani' (Orthoptera: Stenopelmatidae). Analyses of mitochondrial DNA sequence data suggest that diversification across southern California began during the Pleistocene, with most haplotypes currently restricted to a single population. Patterns of genetic divergence correlate with contemporary urbanization, even after correcting for (geographical information system) GIS-based reconstructions of fragmentation during the Pleistocene. Theoretical simulations confirm that contemporary patterns of genetic structure could be produced by recent urban fragmentation using biologically reasonable assumptions about model parameters. Diversity within populations was positively correlated with current fragment size, but not prehistoric fragment size, suggesting that the effects of increased drift following anthropogenic fragmentation are already being seen. Loss of genetic connectivity and diversity can hinder a population's ability to adapt to ecological perturbations commonly associated with urbanization, such as habitat degradation, climatic changes and introduced species. Consequently, our results underscore the importance of preserving and restoring landscape connectivity for long-term persistence of low vagility native species. Journal compilation ?? 2006 Blackwell Publishing Ltd.

Molecular Ecology↗

USGS2020

Simulation modeling of complex climate, wildfire, and vegetation dynamics to address wicked problems in land management

Complex, reciprocal interactions among climate, disturbance, and vegetation dramatically alter spatial landscape patterns and influence ecosystem dynamics. As climate and disturbance regimes shift, historical analogs and past empirical studies may not be entirely appropriate as templates for future management. The need for a better understanding of the potential impacts of climate changes on ecosystems is reaching a new level of urgency, especially in highly perturbed or vulnerable ecological systems. Simulation models are extremely useful tools for guiding management decisions in an era of rapid change, thus providing potential solutions for wicked problems in land management—those that are difficult to solve and inherently resistant to easily definable solutions. We identify three experimental approaches for landscape modeling that address management challenges in the context of uncertain climate futures and complex ecological interactions: (1) an historical comparative approach, (2) a future comparative approach, and (3) threshold detection. We provide examples of each approach from previously published studies of simulated climate, disturbance, and landscape dynamics in forested landscapes of the western United States, modeled with the FireBGCv2 ecosystem process model. Cumulatively, model outcomes indicate that typical land management strategies will likely not be sufficient to counteract the impacts of rapid climate change and altered disturbance regimes that threaten the stability of ecosystems. Without implementation of new, adaptive management strategies, future landscapes are very likely to be different than historical or contemporary ones, with significant and sometimes persistent changes triggered by interactions of climate and wildfire.

Montana, New Mexico, Wyoming↗

USGS2022

Presence of the herbaceous marsh species Schoenoplectus americanus enhances surface elevation gain in transitional coastal wetland communities exposed to elevated CO2 and sediment deposition events

Coastal wetlands are dynamic ecosystems that exist along a landscape continuum that can range from freshwater forested wetlands to tidal marsh to mudflat communities. Climate-driven stressors, such as sea-level rise, can cause shifts among these communities, resulting in changes to ecological functions and services. While a growing body of research has characterized the landscape-scale impacts of individual climate-driven stressors, little is known about how multiple stressors and their potential interactions will affect ecological functioning of these ecosystems. How will coastal wetlands respond to discrete climate disturbances, such as hurricane sediment deposition events, under future conditions of elevated atmospheric CO 2 ? Will these responses vary among the different wetland communities? We conducted experimental greenhouse manipulations to simulate sediment deposition from a land-falling hurricane under future elevated atmospheric CO 2 concentrations (720 ppm CO 2 ). We measured responses of net primary production, decomposition, and elevation change in mesocosms representing four communities along a coastal wetland landscape gradient: freshwater forested wetland, forest/marsh mix, marsh, and mudflat. When Schoenoplectus americanus was present, above- and belowground biomass production was highest, decomposition rates were lowest, and wetland elevation gain was greatest, regardless of CO 2 and sediment deposition treatments. Sediment addition initially increased elevation capital in all communities, but post-deposition rates of elevation gain were lower than in mesocosms without added sediment. Together these results indicate that encroachment of oligohaline marshes into freshwater forested wetlands can enhance belowground biomass accumulation and resilience to sea-level rise, and these plant-mediated ecosystem services will be augmented by periodic sediment pulses from storms and restoration efforts.

Plants↗

USGS2014

Wildlife health in a rapidly changing North: focus on avian disease

Climate-related environmental changes have increasingly been linked to emerging infectious diseases in wildlife. The Arctic is facing a major ecological transition that is expected to substantially affect animal and human health. Changes in phenology or environmental conditions that result from climate warming may promote novel species assemblages as host and pathogen ranges expand to previously unoccupied areas. Recent evidence from the Arctic and subarctic suggests an increase in the spread and prevalence of some wildlife diseases, but baseline data necessary to detect and verify such changes are still lacking. Wild birds are undergoing rapid shifts in distribution and have been implicated in the spread of wildlife and zoonotic diseases. Here, we review evidence of current and projected changes in the abundance and distribution of avian diseases and outline strategies for future research. We discuss relevant climatic and environmental factors, emerging host–pathogen contact zones, the relationship between host condition and immune function, and potential wildlife and human health outcomes in northern regions.

Frontiers in Ecology and the Environment↗

USGS2023

Decision science as a framework for combining geomorphological and ecological modeling for the management of coastal systems

The loss of ecosystem services due to climate change and coastal development is projected to have significant impacts on local economies and conservation of natural resources. Consequently, there has been an increase in coastal management activities such as living shorelines, oyster reef restoration, marsh restoration, beach and dune nourishment, and revegetation projects. Coastal management decisions are complex and include challenging trade-offs. Decision science offers a useful framework to address such complex problems. Here, we provide a synthesis about how decision science can help to integrate research from multiple disciplines (physical and life sciences) with management of coastal and marine systems. Specifically, we discuss the importance of considering concepts and techniques from ecology, coastal geology, geomorphology, climate science, oceanography, and decision analysis when developing conservation plans for coastal restoration. We illustrate the process with several coastal restoration studies. Our capstone example is based on a recent barrier island restoration assessment project at Dauphin Island, Alabama, which included the development of geomorphological and ecological models. We show how decision science can be used as a framework to combine geomorphological and ecological modeling to help inform management decisions while considering uncertainty about system changes and risk tolerance. We also build on our examples through a review of recently developed techniques for spatial conservation planning for land acquisition decisions and the application of adaptive management for sequential decisions.

Alabama↗

USGS2026

Building resilience in dryland ecosystems: A climate adaptation strategy menu for pinyon–juniper woodlands

Pinyon–juniper (PJ) woodlands, one of the most extensive mature and old-growth woodland types in the Western United States, provide critical ecological, cultural, and economic benefits but face increasing threats from climate change, altered disturbance regimes, invasive species, and pests. We developed the PJ Woodland Climate Adaptation Management Menu, a decision support tool designed to guide adaptive, climate-informed management of PJ ecosystems, particularly within the Colorado Plateau ecoregion. The menu was created through an iterative, collaborative process involving literature review, integration of strategies from existing adaptation frameworks, and extensive input from scientists, land managers, and community partners during workshops and focus groups. The menu links specific, evidence-based approaches to each of six broad strategies, including soliciting community input, mitigating disturbance, enhancing and maintaining biodiversity, conserving ecotones, timing actions for optimal outcomes, and accepting climate-driven changes when appropriate. It is intended for use with the Adaptation Workbook to help managers connect local goals and climate vulnerabilities to tailored management tactics. Hypothetical scenarios demonstrate the menu’s application to contrasting PJ woodland conditions, from die-off events to old-growth maintenance. Lessons learned during development underscore the value of early stakeholder engagement, cross-sector collaboration, and balancing diverse ecological objectives. This menu offers a flexible, transferable framework to strengthen climate resilience in PJ woodlands and serves as a model that could improve adaptation planning in other dryland forest ecosystems.

Forests↗

USGS2020

Hydro-morphological characterization of coral reefs for wave runup prediction

Many coral reef-lined coasts are low-lying with elevations <4 m above mean sea level. Climate-change-driven sea-level rise, coral reef degradation, and changes in storm wave climate will lead to greater occurrence and impacts of wave-driven flooding. This poses a significant threat to their coastal communities. While greatly at risk, the complex hydrodynamics and bathymetry of reef-lined coasts make flood risk assessment and prediction costly and difficult. Here we use a large (>30,000) dataset of measured coral reef topobathymetric cross-shore profiles, statistics, machine learning, and numerical modeling to develop a set of representative cluster profiles (RCPs) that can be used to accurately represent the shoreline hydrodynamics of a large variety of coral reef-lined coasts around the globe. In two stages, the large dataset is reduced by clustering cross-shore profiles based on morphology and hydrodynamic response to typical wind and swell wave conditions. By representing a large variety of coral reef morphologies with a reduced number of RCPs, a computationally feasible number of numerical model simulations can be done to obtain wave runup estimates, including setup at the shoreline and swash separated into infragravity and sea-swell components, of the entire dataset. The predictive capability of the RCPs is tested against 5,000 profiles from the dataset. The wave runup is predicted with a mean error of 9.7–13.1%, depending on the number of cluster profiles used, ranging from 312 to 50. The RCPs identified here can be combined with probabilistic tools that can provide an enhanced prediction given a multivariate wave and water level climate and reef ecology state. Such a tool can be used for climate change impact assessments and studying the effectiveness of reef restoration projects, as well as for the provision of coastal flood predictions in a simplified (global) early warning system.

Frontiers in Marine Science↗

USGS2023

Assessment of recovery potential for the American horseshoe crab (Limulus polyphemus): An application of the IUCN green status process

According to an International Union for Conservation of Nature (IUCN) Red List assessment (RLA), the American horseshoe crab ( Limulus polyphemus ), an iconic coastal species, is at risk of extirpation in some regions within its range where small and vulnerable populations occur. However, the RLA does not consider future status beyond viability and does not attempt to identify the conservation necessary to effectively mitigate threats and recover the species to full ecological functionality. To aid in conservation planning for vulnerable species, the IUCN developed the Green Status of Species assessment (GSA) process to complement the RLA. This paper describes the application of the GSA process to assess the recovery potential of the American horseshoe crab. First, specific Limulus populations within spatial units for conservation were delineated, and their statuses were defined based on viability and ecological functionality. Then conservation actions were identified that would promote recovery and affect their near- and long-term population status under different conservation scenarios. Horseshoe crab conservation has relied on, and will continue to depend on, effective harvest regulation. However, as currently conceived, conservation is not expected to mitigate habitat loss at the scale required to restore range-wide ecological functionality, primarily because habitat loss is widespread and affected by climate change. Thus, the GSA results, while indicating that there is potential for near-term recovery gains, reveal that long-term recovery is in doubt owing to expected loss of habitat. To conserve critical habitats for spawning and early life stages and achieve ecological functionality, it is imperative to identify and develop conservation plans at appropriate spatial scales. Unfortunately, such plans do not currently exist and need to be established. The GSA Green Score can then serve as a metric for monitoring recovery and gauging the effectiveness of conservation implementation.

Aquatic Conservation: Marine and Freshwater Ecosys↗

USGS2016

Consistent response of bird populations to climate change on two continents

Global climate change is a major threat to biodiversity. Large-scale analyses have generally focused on the impacts of climate change on the geographic ranges of species and on phenology, the timing of ecological phenomena. We used long-term monitoring of the abundance of breeding birds across Europe and the United States to produce, for both regions, composite population indices for two groups of species: those for which climate suitability has been either improving or declining since 1980. The ratio of these composite indices, the climate impact indicator (CII), reflects the divergent fates of species favored or disadvantaged by climate change. The trend in CII is positive and similar in the two regions. On both continents, interspecific and spatial variation in population abundance trends are well predicted by climate suitability trends.

Science↗

USGS2011

Design of ecoregional monitoring in conservation areas of high-latitude ecosystems under contemporary climate change

Land ownership in Alaska includes a mosaic of federally managed units. Within its agency’s context, each unit has its own management strategy, authority, and resources of conservation concern, many of which are migratory animals. Though some units are geographically isolated, many are nevertheless linked by paths of abiotic and biotic flows, such as rivers, air masses, flyways, and terrestrial and aquatic migration routes. Furthermore, individual land units exist within the context of a larger landscape pattern of shifting conditions, requiring managers to understand at larger spatial scales the status and trends in the synchrony and spatial concurrence of species and associated suitable habitats. Results of these changes will determine the ability of Alaska lands to continue to: provide habitat for local and migratory species; absorb species whose ranges are shifting northward; and experience mitigation or exacerbation of climate change through positive and negative atmospheric feedbacks. We discuss the geographic and statutory contexts that influence development of ecological monitoring; argue for the inclusion of significant amounts of broad-scale monitoring; discuss the importance of defining clear programmatic and monitoring objectives; and draw from lessons learned from existing long-term, broad-scale monitoring programs to apply to the specific contexts relevant to high-latitude protected areas such as those in Alaska. Such areas are distinguished by their: marked seasonality; relatively large magnitudes of contemporary change in climatic parameters; and relative inaccessibility due to broad spatial extent, very low (or zero) road density, and steep and glaciated areas. For ecological monitoring to effectively support management decisions in high-latitude areas such as Alaska, a monitoring program ideally would be structured to address the actual spatial and temporal scales of relevant processes, rather than the artificial boundaries of individual land-management units. Heuristic models provide a means by which to integrate understanding of ecosystem structure, composition, and function, in the midst of numerous ecosystem drivers.

Alaska↗