Search USGSSearch

SEARCH · Search USGS

Results for “Biology”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 361 records · Page 20Linked to original sources

Book review: Advances in reintroduction biology of Australian and New Zealand fauna

Reintroduction, and other forms of moving animals around the landscape, is an estab lished action that has been used in the contexts of mitiga tion, conservation, and salvage. Advances in Reintroduction Biol ogy of Australia n and New Zealand Fauna is more than an update of its pred ecessor (Serena 1995 ). This book not only enumerates advances in reintroduction but also provides a cogent road map for understanding and applying current know ledge, and for developing future strategi es. Review info: Advances in Reintroduction Biology of Australian and New Zealand Fauna. Doug P. Armstrong, Matthew W. Hayward, Dorian Moro, and Philip J. Seddon, editors. 2015. ISBN 978-1486303014. 320 pp.

Journal of Wildlife Management

Legacies of a large flood and biological control on riparian vegetation successional trajectories along a dryland braided river

The interplay of disturbance and stability drives vegetation dynamics. Disturbance reduces vegetation biomass, and stability fosters its development. In riparian systems, natural disturbance is largely manifested through flood-driven fluvial processes, but other forms of disturbance, such as herbivory or fire, may influence vegetation dynamics. We studied the successional trajectories of plant communities following a 40-year flood in 2010 that significantly changed floodplain vegetation along the lower Virgin River (southwestern USA). Shortly (0–2 years) after this flood, another large disturbance event of a different nature occurred: extensive defoliation and some mortality of alien Tamarix shrubs (which dominated vegetation cover at that time in the study area) by a biological control beetle. In 2021, we resampled vegetation and topography in 439 plots that we previously monitored in 2010, 2012, 2015, and 2017 along 23 transects across five river reaches. Between 2015 and 2021, stability predominated, with only small floods (1.5- to 3-year) and limited Tamarix defoliation. By 2021, plant communities were converging, but persistent divergences existed and were associated with legacy effects of fluvial disturbance and defoliation. Native Pluchea sericea shrubs had the highest cover across all fluvial landforms. Tamarix partially recovered from defoliation, but only reached similar cover to P. sericea in plots less affected by the 40-year flood. Native Populus fremontii , Prosopis pubescens , and Salix gooddingii trees, and Salix exigua shrubs, remained subordinate. Our study illustrates how successional trajectories in riparian systems depend on the nature and regime of disturbance and its legacy effects on vegetation.

Arizona, Nevada, Utah

Lake Superior Kiyi reproductive biology

Objective The Lake Superior Kiyi Coregonus kiyi is an understudied species being considered for reintroduction into Laurentian Great Lakes where it no longer occurs. Herein, we provide descriptions of Kiyi reproductive biology with the intention of guiding potential gamete collections for propagation. Methods Data were collected on Kiyi spawning timing, spawning locations, spawning season catch rates, length at sexual maturity, sex ratios, fecundity, egg size, and larval occurrences in Lake Superior from 1996–2021. These data were compared to observations made a century prior in Lakes Michigan, Ontario, and Superior. Result Contemporary Kiyi spawning occurred between late December and late January when surface water temperatures cooled to <4°C. Spawning Kiyi were caught almost exclusively in 38.1-mm stretch mesh, as compared to larger meshes (50.8–76.2 mm). Capture depths for developing, ripe, running, and spent female Kiyi were similar and ranged from 82 to 221 m. Fifty percent of female and male Kiyi were classified as sexually mature at ~150 mm total length. Fecundity estimates ranged from 1,578 to 6,720 eggs/female. Mean diameter of unfertilized eggs was 1.7 mm. Recently hatched larval Kiyi were collected at the surface during May–July at 62 of the 113 locations sampled throughout the lake in 2019. Conclusion Our work suggests that Kiyi gamete collection efforts from mid-December through January using 38.1-mm gill-net panels set at bathymetric depths of at least 100 m would maximize the collection of spawning Kiyi and reduce the bycatch of other Coregonus species. Future research questions include the following: (1) “Do Kiyi form spawning aggregations at specific spawning areas, or do they spawn indiscriminately across the lake?”; (2) “Do Kiyi spawn near the bottom or up in the water column?”; (3) “What is the relationship between fall lake overturn and Kiyi spawn timing?”; and (4) “Could summer larval and age-0 Kiyi collections provide an opportunity for establishing a captive broodstock?”

Lake Superior

Biological soil crusts as an organizing principle in drylands

Biological soil crusts (biocrusts) have been present on Earth&rsquo;s terrestrial surfaces for billions of years. They are a critical part of ecosystem processes in dryland regions, as they cover most of the soil surface and thus mediate almost all inputs and outputs from soils in these areas. There are many intriguing, but understudied, roles these communities may play in drylands. These include their function in nutrient capture and transformation, influence on the movement and distribution of nutrients and water within dryland soils, ability to structure vascular plant communities, role in creating biodiversity hotspots, and the possibility that they can be used as indicators of soil health. There are still many fascinating aspects of these communities that need study, and we hope that this chapter will facilitate such efforts.

Book chapter

Patterns and controls on nitrogen cycling of biological soil crusts

Biocrusts play a significant role in the nitrogen [N ] cycle within arid and semi-arid ecosystems, as they contribute major N inputs via biological fixation and dust capture, harbor internal N transformation processes, and direct N losses via N dissolved, gaseous and erosional loss processes (Fig. 1). Because soil N availability in arid and semi-arid ecosystems is generally low and may limit net primary production (NPP), especially during periods when adequate water is available, understanding the mechanisms and controls of N input and loss pathways in biocrusts is critically important to our broader understanding of N cycling in dryland environments. In particular, N cycling by biocrusts likely regulates short-term soil N availability to support vascular plant growth, as well as long-term N accumulation and maintenance of soil fertility. In this chapter, we review the influence of biocrust nutrient input, internal cycling, and loss pathways across a range of biomes. We examine linkages between N fixation capabilities of biocrust organisms and spatio-temporal patterns of soil N availability that may influence the longer-term productivity of dryland ecosystems. Lastly, biocrust influence on N loss pathways such as N gas loss, leakage of N compounds from biocrusts, and transfer in wind and water erosion are important to understand the maintenance of dryland soil fertility over longer time scales. Although great strides have been made in understanding the influence of biocrusts on ecosystem N cycling, there are important knowledge gaps in our understanding of the influence of biocrusts on ecosystem N cycling that should be the focus of future studies. Because work on the interaction of N cycling and biocrusts was reviewed in Belnap and Lange (2003), this chapter will focus primarily on research findings that have emerged over the last 15 years (2000-2015).

Book chapter

Carbon budgets of biological soil crusts at micro-, meso-, and global scales

The importance of biocrusts in the ecology of arid lands across all continents is widely recognized. In spite of this broad distribution, contributions of biocrusts to the global biogeochemical cycles have only recently been considered. While these studies opened a new view on the global role of biocrusts, they also clearly revealed the lack of data for many habitats and of overall standards for measurements and analysis. In order to understand carbon cycling in biocrusts and the progress which has been made during the last 15 years, we offer a multi-scale approach covering different climatic regions. We also include a discussion on available measurement techniques at each scale: A micro-scale section focuses on the individual organism level, including modeling based on the combination of field and lab data. The meso-scale section addresses the CO2 exchange of a complete ecosystem or at the community level. Finally, we consider the contribution of biocrusts at a global scale, giving a general perspective of the most relevant findings regarding the role of biological soil crusts in the global terrestrial carbon cycle.

Book chapter

Biological soil crusts as soil stabilizers

Soil erosion is of particular concern in dryland regions, as the sparse cover of vascular plants results in large interspaces unprotected from the erosive forces of wind and water. Thus, most of these soil surfaces are stabilized by physical or biological soil crusts. However, as drylands are extensively used by humans and their animals, these crusts are often disturbed, compromising their stabilizing abilities. As a result, approximately 17.5% of the global terrestrial lands are currently being degraded by wind and water erosion. All components of biocrusts stabilize soils, including green algae, cyanobacteria, fungi, lichens, and bryophytes, and as the biomass of these organisms increases, so does soil stability. In addition, as lichens and bryophytes live atop the soil surface, they provide added protection from raindrop impact that cyanobacteria and fungi, living within the soil, cannot. Much research is still needed to determine the relative ability of individual species and suites of species to stabilize soils. We also need a better understanding of why some individuals or combination of species are better than others, especially as these organisms become more frequently used in restoration efforts.

Book chapter

How biological soil crusts became recognized as a functional unit: a selective history

It is surprising that despite the world-wide distribution and general importance of biological soil crusts (biocrusts), scientific recognition and functional analysis of these communities is a relatively young field of science. In this chapter, we sketch the historical lines that led to the recognition of biocrusts as a community with important ecosystem functions. The idea of biocrusts as a functional ecological community has come from two main scientific branches: botany and soil science. For centuries, botanists have long recognized that multiple organisms colonize the soil surface in the open and often dry areas occurring between vascular plants. Much later, after the initial taxonomic and phyto-sociological descriptions were made, soil scientists and agronomists observed that these surface organisms interacted with soils in ways that changed the soil structure. In the 1970’s, research on these communities as ecological units that played an important functional role in drylands began in earnest, and these studies have continued to this day. Here, we trace the history of these studies from the distant past until 1990, when biocrusts became well-known to scientists and the public.

Book chapter

Natural recovery of biological soil crusts after disturbance

Natural recovery of biological soil crusts (biocrusts) is influenced by a number of different parameters, such as climate, soil conditions, the severity of disturbance, and the timing of disturbance relative to the climatic conditions. In recent studies, it has been shown that recovery is often not linear, but a highly dynamic process directly influenced by non-linear external parameters as extraordinary climatic conditions (e.g., particularly dry or wet year). Natural recovery often follows a general succession pattern, starting out with cyanobacteria and algae, which is then followed by lichens and bryophytes at a later stage. However, this general sequence can be altered by parameters like dust deposition, fire effects, and special climatic conditions as in fog deserts and under mesic climates. Recent studies have proposed that under favorable, stable soil conditions, the initial soil-stabilizing cyanobacteria-dominated succession stages may be omitted and moss-dominated biocrusts can develop in the initial phases of biocrust development. During natural recovery of biocrusts, soil properties change, e.g., soil nutrient and organic matter contents increase. Also, silt and clay contents of encrusted soils increase with biocrust maturity, which may be caused by two mechanisms, i.e. entrapment of fine soil particles by biocrusts and the new formation of smaller particles by weathering of the existing substrate.

Book chapter

Biological phosphorus cycling in dryland regions

The relatively few studies done on phosphorus (P) cycling in arid and semiarid lands (drylands) show many factors that distinguish P cycling in drylands from that in more mesic regions. In drylands, most biologically relevant P inputs and losses are from the deposition and loss of dust. Horizontal and vertical redistribution of P is an important process. P is concentrated at the soil surface and thus vulnerable to loss via erosion. High pH and CaCO 3 limit P bioavailability, and low rainfall limits microbe and plant ability to free abiotically bound P via exudates, thus making it available for uptake. Many invasive plants are able to access recalcitrant P more effectively than are native plants. As P availability depends on soil moisture and temperature, climate change is expected to have large impacts on P cycling.

Book chapter

Submarine mass transport within Monterey Canyon: Benthic disturbance controls on the distribution of chemosynthetic biological communities

Documenting mass transport within Monterey Canyon and Fan has been a focus of remotely operated vehicle (ROV) observations, sampling, monitoring, and multibeam mapping studies. These efforts indicate that major mass transport events occur within upper Monterey Canyon (<2 km water depths) with a sub-annual recurrence frequency. However, 14 C-stratigraphies indicate that a sand carrying event has not penetrated through lower Monterey Canyon (>2 km water depths) and onto Monterey Fan for ~100 years. Simultaneous efforts to document the distribution of benthic taxa observed in the video records from 668 ROV dives conducted by the Monterey Bay Aquarium Research Institute (MBARI) provide a uniquely detailed record of the occurrence of chemosynthetic biological communities (CBC). The combined results of these studies provide an understanding of the relationship between disturbance caused by episodic mass wasting events and the distribution of CBC. CBC are common within the canyon's axis below ~2.5 km water depth, but have not been found within the canyon's axis at depths shallower than 2 km. Moreover, CBC occur on the canyon walls at essentially any depth, primarily within young (~hundreds of years old) slump scars. The distribution of CBC provides evidence about the disturbance history of the seafloor. Major mass transport events will destroy communities that lie in their path. Erosion associated with major mass transport events can create environments to support CBC by exposing methane-bearing strata. This can happen as a result of slumping events on the sidewalls of the canyon or where major gravity flow events have excavated the base of canyon walls. Once fresh strata are exposed, geochemical conditions to support CBC will persist for a few centuries. Because CBC are composed of slow-growing and long-lived organisms, it will take decades for these communities to be established. Their existence indicates that environmental stability has occurred over a similar time scale.

California

Can we determine the biological availability of sediment-bound trace elements?

It is clear from available data that the susceptibility of biological communities to trace element contamination differs among aquatic environments. One important reason is that the bioavailability of metals in sediments appears to be altered by variations in sediment geochemistry. However, methods for explaining or predicting the effect of sediment geochemistry upon metal bioavailability are poorly developed. Experimental studies demonstrate that ingestion of sediments and uptake from solution may both be important pathways of metal bioaccumulation in deposit/detritus feeding species. Relative importance between the two is geochemistry dependent. Geochemical characteristics of sediments also affect metal concentrations in the tissues of organisms collected from nature, but the specific mechanisms by which these characteristics influence metal bioavailability have not been rigorously demonstrated. Several prerequisites are necessary to better understand the processes that control metal bioavailability from sediments. 1) improved computational or analytical methods for analyzing distribution of metals among components of the sediments; 2) improved computational methods for assessing the influences of metal form in sediments on sediment-water metal exchange; and 3) a better understanding of the processes controlling bioaccumulation of metals from solution and food by metazoan species directly exposed to the sediments. Such capabilities would allow mechanistic explanations essential to the development of practical tools sought for determining sediment quality criteria for metals.

Hydrobiologia

A comparison of soil climate and biological activity along an elevation gradient in the eastern Mojave Desert

Soil temperature, moisture, and CO2 were monitored at four sites along an elevation transect in the eastern Mojave Desert from January to October, 1987. Climate appeared to be the major factor controlling CO2 partial pressures, primarily through its influence of rates of biological reactions, vegetation densities, and organic matter production. With increasing elevation, and increasing actual evapotranspiration, the organic C, plant density, and the CO2 content of the soils increased. Between January and May, soil CO2 concentrations at a given site were closely related to variations in soil temperature. In July and October, temperatures had little effect on CO2, presumably due to low soil moisture levels. Up to 75% of litter placed in the field in March was lost by October whereas, for the 3 lower elevations, less than 10% of the litter placed in the field in April was lost through decomposition processes. ?? 1989 Springer-Verlag.

Oecologia

Small-Scale Vertical Distribution of Bacterial Biomass and Diversity in Biological Soil Crusts from Arid Lands in the Colorado Plateau

We characterized, at millimeter resolution, bacterial biomass, diversity, and vertical stratification of biological soil crusts in arid lands from the Colorado Plateau. Microscopic counts, extractable DNA, and plate counts of viable aerobic copiotrophs (VAC) revealed that the top centimeter of crusted soils contained atypically large bacterial populations, tenfold larger than those in uncrusted, deeper soils. The plate counts were not always consistent with more direct estimates of microbial biomass. Bacterial populations peaked at the immediate subsurface (1-2 mm) in light-appearing, young crusts, and at the surface (0-1 mm) in well-developed, dark crusts, which corresponds to the location of cyanobacterial populations. Bacterial abundance decreased with depth below these horizons. Spatially resolved DGGE fingerprints of Bacterial 16S rRNA genes demonstrated the presence of highly diverse natural communities, but we could detect neither trends with depth in bacterial richness or diversity, nor a difference in diversity indices between crust types. Fingerprints, however, revealed the presence of marked stratification in the structure of the microbial communities, probably a result of vertical gradients in physicochemical parameters. Sequencing and phylogenetic analyses indicated that most of the naturally occurring bacteria are novel types, with low sequence similarity (83-93%) to those available in public databases. DGGE analyses of the VAC populations indicated communities of lower diversity, with most types having sequences more than 94% similar to those in public databases. Our study indicates that soil crusts represent small-scale mantles of fertility in arid ecosystems, harboring vertically structured, little-known bacterial populations that are not well represented by standard cultivation methods.

Microbial Ecology

Linking altered flow regimes to biological condition: An example using benthic macroinvertebrates in small streams of the Chesapeake Bay watershed

Regionally scaled assessments of hydrologic alteration for small streams and its effects on freshwater taxa are often inhibited by a low number of stream gages. To overcome this limitation, we paired modeled estimates of hydrologic alteration to a benthic macroinvertebrate index of biotic integrity data for 4522 stream reaches across the Chesapeake Bay watershed. Using separate random-forest models, we predicted flow status (inflated, diminished, or indeterminant) for 12 published hydrologic metrics (HMs) that characterize the main components of flow regimes. We used these models to predict each HM status for each stream reach in the watershed, and linked predictions to macroinvertebrate condition samples collected from streams with drainage areas less than 200 km 2 . Flow alteration was calculated as the number of HMs with inflated or diminished status and ranged from 0 (no HM inflated or diminished) to 12 (all 12 HMs inflated or diminished). When focused solely on the stream condition and flow-alteration relationship, degraded macroinvertebrate condition was, depending on the number of HMs used, 3.8–4.7 times more likely in a flow-altered site; this likelihood was over twofold higher in the urban-focused dataset (8.7–10.8), and was never significant in the agriculture-focused dataset. Logistic regression analysis using the entire dataset showed for every unit increase in flow-alteration intensity, the odds of a degraded condition increased 3.7%. Our results provide an indication of whether altered streamflow is a possible driver of degraded biological conditions, information that could help managers prioritize management actions and lead to more effective restoration efforts.

Chesapeake Bay watershed

Climatic sensitivity of dryland soil CO2 fluxes differs dramatically with biological soil crust successional state

Arid and semiarid ecosystems make up approximately 41% of Earth’s terrestrial surface and are suggested to regulate the trend and interannual variability of the global terrestrial carbon (C) sink. Biological soil crusts (biocrusts) are common dryland soil surface communities of bryophytes, lichens, and/or cyanobacteria that bind the soil surface together and that may play an important role in regulating the climatic sensitivity of the dryland C cycle. Major uncertainties exist in our understanding of the interacting effects of changing temperature and moisture on CO 2 uptake (photosynthesis) and loss (respiration) from biocrust and sub-crust soil, particularly as related to biocrust successional state. Here, we used a mesocosm approach to assess how biocrust successional states related to climate treatments. We subjected bare soil (Bare), early successional lightly pigmented cyanobacterial biocrust (Early), and late successional darkly pigmented moss-lichen biocrust (Late) to either ambient or + 5°C above ambient soil temperature for 84 days. Under ambient temperatures, Late biocrust mesocosms showed frequent net uptake of CO 2 , whereas Bare soil, Early biocrust, and warmed Late biocrust mesocosms mostly lost CO 2 to the atmosphere. The inhibiting effect of warming on CO 2 exchange was a result of accelerated drying of biocrust and soil. We used these data to parameterize, via Bayesian methods, a model of ecosystem CO 2 fluxes, and evaluated the model with data from an autochamber CO 2 system at our field site on the Colorado Plateau in SE Utah. In the context of the field experiment, the data underscore the negative effect of warming on fluxes both biocrust CO 2 uptake and loss—which, because biocrusts are a dominant land cover type in this ecosystem, may extend to ecosystem-scale C cycling.

Ecosystems

Biological soil crusts (biocrusts) as a model system in community, landscape and ecosystem ecology

Model systems have had a profound influence on the development of ecological theory and general principles. Compared to alternatives, the most effective models share some combination of the following characteristics: simpler, smaller, faster, general, idiosyncratic or manipulable. We argue that biological soil crusts (biocrusts) have unique combinations of these features that should be more widely exploited in community, landscape and ecosystem ecology. In community ecology, biocrusts are elucidating the importance of biodiversity and spatial pattern for maintaining ecosystem multifunctionality due to their manipulability in experiments. Due to idiosyncrasies in their modes of facilitation and competition, biocrusts have led to new models on the interplay between environmental stress and biotic interactions and on the maintenance of biodiversity by competitive processes. Biocrusts are perhaps one of the best examples of micro-landscapes—real landscapes that are small in size. Although they exhibit varying patch heterogeneity, aggregation, connectivity and fragmentation, like macro-landscapes, they are also compatible with well-replicated experiments (unlike macro-landscapes). In ecosystem ecology, a number of studies are imposing small-scale, low cost manipulations of global change or state factors in biocrust micro-landscapes. The versatility of biocrusts to inform such disparate lines of inquiry suggests that they are an especially useful model system that can enable researchers to see ecological principles more clearly and quickly.

Biodiversity and Conservation

Seasonality of biological and physical systems as indicators of climatic variation and change

Evidence-based responses to climate change by society require operational and sustained information including biophysical indicator systems that provide up-to-date measures of trends and patterns against historical baselines. Two key components linking anthropogenic climate change to impacts on socio-ecological systems are the periodic inter- and intra-annual variations in physical climate systems (seasonality) and in plant and animal life cycles (phenology). We describe a set of national indicators that reflect sub-seasonal to seasonal drivers and responses of terrestrial physical and biological systems to climate change and variability at the national scale. Proposed indicators and metrics include seasonality of surface climate conditions (e.g., frost and freeze dates and durations), seasonality of freeze/thaw in freshwater systems (e.g., timing of stream runoff and durations of lake/river ice), seasonality in ecosystem disturbances (e.g., wildfire season timing and duration), seasonality in vegetated land surfaces (e.g., green-up and brown-down of landscapes), and seasonality of organismal life-history stages (e.g., timings of bird migration). Recommended indicators have strong linkages to variable and changing climates, include abiotic and biotic responses and feedback mechanisms, and are sufficiently simple to facilitate communication to broad audiences and stakeholders interested in understanding and adapting to climate change.

Climatic Change