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The needs of salmon and steelhead in balancing their conservation and use

Over the past 100 years, Pacific salmon Oncorhynchus spp. and steelhead trout O. mykiss populations in the Pacific Northwest have experienced dramatic declines as a result of human population growth and associated development of the region's natural resources. Any strategy to reverse those declines will depend on achieving consensus among a diverse group of stakeholders willing to (1) restore damaged habitats and watersheds; (2) consider the biological needs of salmonid fishes; and (3) understand, conserve, and manage existing levels of biodiversity within an ecosystem context. The objective of this chapter is to review and summarize the needs of Pacific salmon and steelhead trout from perspectives that promote their sustainability and perpetuity, and, within that context, provide a framework, for the development of a sustainable fisheries strategy. Although volumes of information are available on the life histories and habitat requirements of Pacific salmonids, new concepts have begun to address the importance of habitat complexity, genetic diversity among locally adapted populations, and the need for appropriate units of conservation. Habitat variability and complexity are the templates that produce diverse, locally adapted populations of Pacific salmon and steelhead trout. Molded by conditions in the environments they colonized, salmon and steelhead have unique adaptations they may have taken hundred i?? perhaps thousands i?? of years to evolve. Any strategy to reverse the declines of salmon and steelhead must focus on conserving both current levels of genetic diversity as well as restoration and maintenance of habitats compatible with the specific needs of individual populations. An argument can be made that we know enough already about the needs of our salmon and steelhead to allow us to make appropriate decisions. There is strong need to integrate what we know about local salmonid adaptations and habitat needs with conservation and management strategies that address the problems we have created. It may be possible to have healthy, sustainable salmonid populations coastwide if we do not wait too long to make up our minds.

Book chapter↗

Biodiversity on public lands: How community science can help

Species inventories are crucial for conservation but are difficult to assemble and maintain. Bioblitzes, which encourage the public to document biodiversity in a particular area and timeframe, may offer useful information but their integration with other datasets poses challenges. We investigated the potential contribution of bioblitzes to natural resource management using observations from the United States National Park Service (NPS) 2016 Centennial Bioblitz. Through automated cross-referencing over 19,000 iNaturalist “research-grade” observations from 107 national parks with existing park inventory lists, we matched 86% of species documented in the Bioblitz to NPS species lists, based on current taxonomy, and matched another 6% of species using alternative scientific names using our matching process in R. Of the remaining 13.5% that did not match the NPS species lists, we manually found that 84% of the unmatched species were found within the lists or were outside the boundaries of the park, identifying 141 native species that were unrecorded in NPS species lists. Many introduced species were recorded; they were more likely to be documented in parks closer to cities. Parks near cities also drew more participants. Our study shows how public participation, through iNaturalist and bioblitzes, can facilitate biodiversity monitoring across large spatial scales.

Conservation Science and Practice↗

Incorporating genetic sampling in long-term monitoring and adaptive management in the San Diego County Management Strategic Plan Area, Southern California

Habitat and species conservation plans usually rely on monitoring to assess progress towards conservation goals. Southern California, USA, is a hotspot of biodiversity and home to many federally endangered and threatened species. Here, several regional multi-species conservation plans have been implemented to balance development and conservation goals, including in San Diego County. In the San Diego County Management Strategic Plan Area (MSPA), a monitoring framework for the preserve system has been developed with a focus on species monitoring, vegetation monitoring, threats monitoring and abiotic monitoring. Genetic sampling over time (genetic monitoring) has proven useful in gathering species presence and abundance data and detecting population trends, particularly related to species and threats monitoring objectives. This report reviews genetic concepts and techniques of genetics that relate to monitoring goals and outlines components of a genetic monitoring scheme that could be applied in San Diego or in other monitoring frameworks throughout the Nation.

California↗

Supporting the adaptive capacity of species through more effective knowledge exchange with conservation practitioners

There is an imperative for conservation practitioners to facilitate the ability of biodiversity to adapt to accelerating environmental change. Evolutionary biologists are well-positioned to inform the development of evidence-based management strategies that will effectively support the adaptive capacity of species and ecosystems. Conservation practitioners increasingly accept that management practices must change, but harbor concerns about how to apply recommended changes to their management contexts. Given the goodwill from both conservation practitioners and evolutionary biologists, we believe there is opportunity to accelerate the required changes by promoting closer collaboration between these two groups. We highlight how evolutionary biologists can harness lessons learned via the evidence-based conservation movement to make a substantive contribution to the development of effective conservation management practices. These lessons include: 1) recognising why practitioners do and do not use scientific evidence; 2) building an evidence base that will influence management decisions; 3) translating theory into a format that conservation practitioners can use to inform management practices; and 4) developing strategies for effective knowledge exchange. Although efforts will be required on both sides, we believe there are rewards for both practitioners and evolutionary biologists, not least of which is fostering practices that will help support the long-term persistence of species.

Evolutionary Applications↗

Optimizing conservation strategies for Mexican freetailed bats: a population viability and ecosystem services approach

Conservation planning can be challenging due to the need to balance biological concerns about population viability with social concerns about the benefits biodiversity provide to society, often while operating under a limited budget. Methods and tools that help prioritize conservation actions are critical for the management of at-risk species. Here, we use a multi-attribute utility function to assess the optimal maternity roosts to conserve for maintaining the population viability and the ecosystem services of a single species, the Mexican free-tailed bat ( Tadarida brasiliensis mexicana ). Mexican free-tailed bats provide ecosystem services such as insect pest-suppression in agricultural areas and recreational viewing opportunities, and may be threatened by climate change and development of wind energy. We evaluated each roost based on five attributes: the maternity roost’s contribution to population viability, the pest suppression ecosystem services to the surrounding area provided by the bats residing in the roost, the ecotourism value of the roost, the risks posed to each roost structure, and the risks posed to the population of bats residing in each roost. We compared several scenarios that prioritized these attributes differently, hypothesizing that the set of roosts with the highest rankings would vary according to the conservation scenario. Our results indicate that placing higher values on different roost attributes (e.g. population importance over ecosystem service value) altered the roost rankings. We determined that the values placed on various conservation objectives are an important determinant of habitat planning.

Biodiversity and Conservation↗

Innovation in climate adaptation: Harnessing innovation for effective biodiversity and ecosystem adaptation

Climate change poses growing risks to species, ecosystems, and people, and is challenging many of the assumptions that underpin modern conservation practice. As climate impacts accelerate, conventional conservation approaches are being compromised and losing their effectiveness. As a result, there is an urgent need to not only center climate adaptation in conservation policy and practice, but for adaptation responses to be bolder and more innovative. Innovation in Climate Adaptation is designed to address this need by promoting creativity and innovation in the practice of climate adaptation for biodiversity and ecosystem conservation. The guide is not about promoting innovation for the sake of innovation; rather, it is intended to help policymakers, researchers, and resource managers harness the power of innovation to achieve more effective adaptation outcomes.

Report↗

Assessing effects of nonnative crayfish on mosquito survival

Introductions of nonnative predators often reduce biodiversity and affect natural predator–prey relationships and may increase the abundance of potential disease vectors (e.g., mosquitoes) indirectly through competition or predation cascades. The Santa Monica Mountains (California, U.S.A.), situated in a global biodiversity hotspot, is an area of conservation concern due to climate change, urbanization, and the introduction of nonnative species. We examined the effect of nonnative crayfish (Procambarus clarkii) on an existing native predator, dragonfly nymphs (Aeshna sp.), and their mosquito larvae (Anopheles sp.) prey. We used laboratory experiments to compare the predation efficiency of both predators, separately and together, and field data on counts of dragonfly nymphs and mosquito larvae sampled from 13 local streams. We predicted a lower predation efficiency of crayfish compared with native dragonfly nymphs and a reduced predation efficiency of dragonfly nymphs in the presence of crayfish. Dragonfly nymphs were an order of magnitude more efficient predators than crayfish, and dragonfly nymph predation efficiency was reduced in the presence of crayfish. Field count data showed that populations of dragonfly nymphs and mosquito larvae were strongly correlated with crayfish presence in streams, such that sites with crayfish tended to have fewer dragonfly nymphs and more mosquito larvae. Under natural conditions, it is likely that crayfish reduce the abundance of dragonfly nymphs and their predation efficiency and thereby, directly and indirectly, lead to higher mosquito populations and a loss of ecosystem services related to disease vector control.

California↗

Surficial Geologic Map of the Great Smoky Mountains National Park Region, Tennessee and North Carolina

The Surficial Geology of the Great Smoky Mountains National Park Region, Tennessee and North Carolina was mapped from 1993 to 2003 under a cooperative agreement between the U.S. Geological Survey (USGS) and the National Park Service (NPS). This 1:100,000-scale digital geologic map was compiled from 2002 to 2003 from unpublished field investigations maps at 1:24,000-scale. The preliminary surficial geologic data and map support cooperative investigations with NPS, the U.S. Natural Resource Conservation Service, and the All Taxa Biodiversity Inventory (http://www.dlia.org/) (Southworth, 2001). Although the focus of our work was within the Park, the geology of the surrounding area is provided for regional context. Surficial deposits document the most recent part of the geologic history of this part of the western Blue Ridge and eastern Tennessee Valley of the Valley and Ridge of the Southern Appalachians. Additionally, there is great variety of surficial materials, which directly affect the different types of soil and associated flora and fauna. The surficial deposits accumulated over tens of millions of years under varied climatic conditions during the Cenozoic era and resulted from a composite of geologic processes.

North Carolina, Tennessee↗

Generalized geologic map of bedrock lithologies and surficial deposits in the Great Smoky Mountains National Park region, Tennessee and North Carolina

The geology of the Great Smoky Mountain National Park (GSMNP) region of Tennessee and North Carolina was studied from 1993 to 2003 as part of a cooperative investigation with the National Park Service (NPS). This work has been compiled as a 1:100,000-scale map derived from mapping done at 1:24,000 and 1:62,500 scale. The geologic data are intended to support cooperative investigations with NPS, the development of a new soil map by the Natural Resources Conservation Service, and the All Taxa Biodiversity Inventory ( http://www.discoverlifeinamerica.org/ ). At the request of NPS, we mapped areas previously not visited, revised the geology where stratigraphic and structural problems existed, and developed a map database for use in interdisciplinary research, land management, and interpretive programs for park visitors.

North Carolina, Tennessee↗

Geologic map of the Great Smoky Mountains National Park region, Tennessee and North Carolina

The geology of the Great Smoky Mountain National Park (GSMNP) region of Tennessee and North Carolina was studied from 1993 to 2003 as part of a cooperative investigation with the National Park Service (NPS). This work has been compiled as a 1:100,000-scale map derived from mapping done at 1:24,000 and 1:62,500 scale. The geologic data are intended to support cooperative investigations with NPS, the development of a new soil map by the Natural Resources Conservation Service, and the All Taxa Biodiversity Inventory ( http://www.discoverlifeinamerica.org/ ). At the request of NPS, we mapped areas previously not visited, revised the geology where stratigraphic and structural problems existed, and developed a map database for use in interdisciplinary research, land management, and interpretive programs for park visitors.

North Carolina, Tennessee↗

Geologic map of the Great Smoky Mountains National Park region, Tennessee and North Carolina

The geology of the Great Smoky Mountains National Park region of Tennessee and North Carolina was studied from 1993 to 2003 as part of a cooperative investigation by the U.S. Geological Survey with the National Park Service (NPS). This work resulted in a 1:100,000-scale geologic map derived from mapping that was conducted at scales of 1:24,000 and 1:62,500. The geologic data are intended to support cooperative investigations with the NPS, the development of a new soil map by the Natural Resources Conservation Service, and the All Taxa Biodiversity Inventory. In response to a request by the NPS, we mapped previously unstudied areas, revised the geology where problems existed, and developed a map database for use in interdisciplinary research, land management, and interpretive programs for park visitors.

North Carolina, Tennessee↗

Mapping karst groundwater flow paths and delineating recharge areas for Fern Cave, Alabama, through the use of dye tracing

Fern Cave in Jackson County, Alabama, is a 15.6-mile-long (25.1-kilometer) cave system, managed by the U.S. Fish and Wildlife Service and Southeastern Cave Conservancy, that has the second highest biodiversity of any cave in the southeastern United States. Groundwater in karst ecosystems is known to be susceptible to impacts from human-induced land-use activities in watersheds that contribute recharge to the groundwater system. To provide the U.S. Fish and Wildlife Service with necessary baseline information on the groundwater flow system in Fern Cave, the U.S. Geological Survey and the Kentucky Geological Survey conducted a series of dye traces during 2019–21 to delineate the watershed recharging the cave system. The dye traces identified two separate streams that flow through the cave and a recharge area of 1.73 square miles (4.48 square kilometers) draining to the cave system. Current land use within the recharge area is dominated by deciduous forest with minimal additional land use types, indicating a low potential for undesirable effects to the cave by anthropogenic sources.

Alabama↗

Prioritizing the risk and management of introduced species in a landscape with high indigenous biodiversity

Risk analysis protocols for prioritizing the management of non-native species are numerous, yet few incorporate risk and management in the same analysis or accommodate a broad diversity of taxa outside of a specific geographic area. We adapted a protocol that accounts for these factors to address non-native animal species in the Southern California/Northern Baja California Coast Ecoregion near the international border in San Diego County, an area with high indigenous biodiversity and high numbers of species of conservation concern. This stepwise, semi-quantitative protocol is applicable to any animal group in any predefined geographic area, relies on consensus-building among taxonomic experts, and has been vetted through previous use and in peer-reviewed literature. Our results show that the final prioritization was driven mainly by management feasibility, with top-ranked species having multitrophic effects that favor other non-native invaders over native residents. Conditions within the assessment area required some modification to the protocol as it was originally designed, namely a shift in emphasis from eradication to control, given that eradication is implausible for most non-native species in the assessment area. We call attention to taxon-specific issues that surfaced during the analysis, identify areas for improvement in this first-ever risk assessment for invasive animal species in the Natural Communities Conservation Plan/Habitat Conservation Plan (NCCP/HCP) reserve system of San Diego County, and provide suggestions for further refinement of the protocol. This study builds on the effort to standardize risk analysis for invasive species globally, given that many of the same invaders present threats to indigenous biodiversity worldwide.

California↗

Using paleo-archives to safeguard biodiversity under climate change

Strategies for 21st-century environmental management and conservation under global change require a strong understanding of the biological mechanisms that mediate responses to climate- and human-driven change to successfully mitigate range contractions, extinctions, and the degradation of ecosystem services. Biodiversity responses to past rapid warming events can be followed in situ and over extended periods, using cross-disciplinary approaches that provide cost-effective and scalable information for species’ conservation and the maintenance of resilient ecosystems in many bioregions. Beyond the intrinsic knowledge gain such integrative research will increasingly provide the context, tools, and relevant case studies to assist in mitigating climate-driven biodiversity losses in the 21st century and beyond.

Science↗

Patterns of ancestry and genetic diversity in reintroduced populations of the slimy sculpin: Implications for conservation

Reintroductions are a common approach for preserving intraspecific biodiversity in fragmented landscapes. However, they may exacerbate the reduction in genetic diversity initially caused by population fragmentation because the effective population size of reintroduced populations is often smaller and reintroduced populations also tend to be more geographically isolated than native populations. Mixing genetically divergent sources for reintroduction purposes is a practice intended to increase genetic diversity. We documented the outcome of reintroductions from three mixed sources on the ancestral composition and genetic variation of a North American fish, the slimy sculpin (Cottus cognatus). We used microsatellite markers to evaluate allelic richness and heterozygosity in the reintroduced populations relative to computer simulated expectations. Sculpins in reintroduced populations exhibited higher levels of heterozygosity and allelic richness than any single source, but only slightly higher than the single most genetically diverse source population. Simulations intended to mimic an ideal scenario for maximizing genetic variation in the reintroduced populations also predicted increases, but they were only moderately greater than the most variable source population. We found that a single source contributed more than the other two sources at most reintroduction sites. We urge caution when choosing whether to mix source populations in reintroduction programs. Genetic characteristics of candidate source populations should be evaluated prior to reintroduction if feasible. When combined with knowledge of the degree of genetic distinction among sources, simulations may allow the genetic diversity benefits of mixing populations to be weighed against the risks of outbreeding depression in reintroduced and nearby populations. ?? 2010 US Government.

Conservation Genetics↗

Considering multiecosystem trade-offs is critical when leveraging systematic conservation planning for restoration

Conservationists are increasingly leveraging systematic conservation planning (SCP) to inform restoration actions that enhance biodiversity. However, restoration frequently drives ecological transformations at local scales, potentially resulting in trade-offs among wildlife species and communities. The Conservation Interactions Principle (CIP), coined more than 15 years ago, cautions SCP practitioners regarding the importance of jointly and fully evaluating conservation outcomes across the landscape over long timeframes. However, SCP efforts that guide landscape restoration have inadequately addressed the CIP by failing to tabulate the full value of the current ecological state. The increased application of SCP to inform restoration, reliance on increasingly small areas to sustain at-risk species and ecological communities, ineffective considerations for the changing climate, and increasing numbers of at-risk species, are collectively intensifying the need to consider unintended consequences when prioritizing sites for restoration. Improper incorporation of the CIP in SCP may result in inefficient use of conservation resources through opportunity costs and/or conservation actions that counteract one another. We suggest SCP practitioners can avoid these consequences through a more detailed accounting of the current ecological benefits to better address the CIP when conducting restoration planning. Specifically, forming interdisciplinary teams with expertise in the current and desired ecosystem states at candidate conservation sites; improving data availability; modeling and computational advancements; and applying structured decision-making approaches can all improve the integration of the CIP in SCP efforts. Improved trade-off assessment, spanning multiple ecosystems or states, can facilitate efficient, proactive, and coordinated SCP applications across space and time. In doing so, SCP can effectively guide the siting of restoration actions capable of promoting the full suite of biodiversity in a region.

Global Change Biology↗

Response of vegetation in open and partially wooded fens to prescribed burning at Seney National Wildlife Refuge

The health and function of northern peatlands, particularly for fens, are strongly affected by fire and hydrology. Fens are important to several avian species of conservation interest, notably the yellow rail ( Coturnicops noveboracensis ). Fire suppression and altered hydrology often result in woody encroachment, altering the plant community and structure. Woody encroachment and its effects on biodiversity have become an increasing concern in the conservation and management of plant communities. This study evaluated the effects of spring and summer prescribed burns on the plant community, cover, and structure in open and partially wooded fens at Seney National Wildlife Refuge, Michigan, using a before-after-control-impact design. Paired, 1-hectare blocks were established in two fen areas, C3 and Marsh Creek, and data were collected for 2 years before burning (2006–7) and 3 years after burning (2008–10). We used generalized linear mixed models and ordination to assess differences among four treatments: C3 control, C3 spring burn (May 2008), Marsh Creek control, and Marsh Creek summer burn (July 2008); results from a block burned under drier conditions in July 2007 also are reported. Variables include water depth; litter depth; graminoid height; species richness and diversity; percent cover of plant taxa, mosses, and open area; shrub height, number of patches, and cover; and visual obstruction readings. The 2008 prescribed burns were done under moderate fire conditions, whereas the 2007 summer burn on one block was done under high fire conditions because of prolonged drought. We identified 104 plant taxa over the 5 years and noted differences between C3 and Marsh Creek communities. We examined data for effects of treatment, year, and year × treatment interactions for percent open and the 28 most common taxa. Most differences among treatments were related to natural differences in the plant community and hydrology between the two areas rather than fire effects; year effects were likely related to annual differences in water conditions. We detected few effects of spring burning in C3, even in the same year of burning. In Marsh Creek, most treatment effects were in 2008, when data were collected within 3 weeks of burning. Some fire effects there, however, persisted one to two growing seasons (2009, 2010) and two to three growing seasons in the block burned in the more intense summer 2007 fire. Effects of burning on shrub measures were more apparent on summer-burned blocks, but most measures returned to preburn conditions by 2010. Our results demonstrate the heterogeneity of plant community and environmental conditions of fens within and among years and the interactions of water conditions with burning. The results also demonstrate that neither single spring nor summer burning under moderate fire conditions are effective in setting back woody cover. Maintaining more open conditions in fens may require different approaches to water management, more frequent fires, more aggressive fire management, or a combination of tools to control woody cover.

Michigan↗

The desperate dozen: Fishes on the brink

IT IS NO SECRET THAT OUR NATIVE AQUATIC ANIMALS ARE IN DECLINE. There are currently 582 species of animals on the Federal list of endangered and threatened species, 268 of these (46%) are found in freshwater habitats. Of the amazing assemblage of 675 fishes found in southeastern waters, more than a quarter are considered imperiled. While all of the Earth’s ecosystems are in trouble, freshwater habitats are recognized to be at severe risk because of their scarcity and the high demands placed on them by humans. The combined effects of agriculture, damming, dredging, construction, logging, overharvest, and pollution are destroying this critical resource for animals, plants, and even ourselves. This major conservation crisis calls for immediate action to conserve and protect the remaining populations and their habitats. The Southeastern Fishes Council (SFC), a nonprofit scientific organization dedicated to the study and conservation of freshwater and coastal fishes of the southeastern United States, is one of the many organizations attempting to reverse the decline of our southeast aquatic habitats and their rich biodiversity. One of the most important steps in conservation is prioritization. The SFC sought to determine where conservation actions would have the largest impact on preventing loss of our freshwater diversity. We decided to focus our efforts on the Desperate Dozen, the 12 fish species we identified as most likely to become extinct in the Southeast. We chose this list in order to reverse their precipitous decline and assist in putting them on the path to recovery. These twelve species are not currently economically important to humans, and their extinction could easily go unnoticed by all but conservation biologists and ichthyologists. Even so, their conservation matters. These species are the canaries in the coal mine, alerting us to the problem that something is very, very wrong in our backyards. Fishes that were once widespread in larger rivers, such as the diamond darter, are now suffering from the same water quality issues that cause harm to humans. Fishes that were once used for commercial gain, such as the Alabama sturgeon, are now too rare for harvest. We have ignored our freshwater to the point where we no longer remember that rivers used to be more common than reservoirs in the Southeast, and our diversity was a resource worth protecting. It is SFC’s goal to use this list to raise awareness of the plight of our freshwater habitats in the Southeast, which include rivers, creeks, wetlands, springs, and caves. The current crisis requires education, communication, and coordination among our neighbors. We have to learn how to prevent harm to our watersheds and develop new collaborations between private and public entities to promote wise development. By highlighting these twelve species, ranging from the spring pygmy sunfish to the Alabama sturgeon, we hope to encourage these partnerships to address the needs of our freshwater animals and hopefully prevent them from slipping quietly into extinction. SFC created a list of the most imperiled southeastern fishes by considering species with the highest risk of extinction. Criteria used, in order of importance, was distribution (a single population ranked highest), low abundance, and severity of threats. After the ranking based on level of imperilment, species were arranged in phylogenetic order so that all would receive equal attention. Experts on each species provided brief accounts on the Desperate Dozen, which include background, distribution, abundance, threats, and proposed conservation actions. The U.S. Fish and Wildlife Service (USFWS) was not consulted in SFC’s identification of the Desperate Dozen fishes, as we intentionally chose to work as an independent scientific panel under the criteria stated above.

Report↗