Search USGS⌕ Search

SEARCH · Search USGS

Results for “Animal Conservation”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 361 records · Page 20Linked to original sources
USGS2017

Human interactions with sirenians (manatees and dugongs)

There are three extant sirenian species of the Trichechidae family and one living Dugongidae family member. Given their close ties to coastal and often urbanized habitats, sirenians are exposed to many types of anthropogenic activities that result in challenges to their well-being, poor health, and even death. In the wild, they are exposed to direct and indirect local pressures as well as subject to large-scale stressors such as global climate change acting on regions or entire genetic stocks. In captivity, they are subject to husbandry and management practices based on our collective knowledge, or in some cases lack thereof, of their needs and welfare. It is therefore reasonable to consider that their current imperiled status is very closely linked to our actions. In this chapter, we identify and define human interactions that may impact dugongs and manatees, including hunting, fisheries, boat interactions, negative interactions with man-made structures, disease and contaminants, and global climate change. We examine techniques used to investigate these impacts and the influence of sirenian biology and of changing human behaviors on potential outcomes. We examine how this differs for dugongs and manatees in the wild and for those held in captivity. Finally, we provide possible mitigation strategies and ways to assess the efforts we are making to improve the welfare of individuals and to conserve these species. This chapter identifies how the welfare of these species is intrinsically linked to the human interactions these animals experience, and how the nature of these interactions has changed with societal shifts. We proffer suggested ways to minimize negative impacts. Current knowledge should be used to minimize negative human interactions and impacts, to promote positive impacts, and to protect these animals for the future.

Book chapter↗
USGS2012

Fine-scale habitat use of reintroduced black-footed ferrets on prairie dog colonies in New Mexico

Black-footed ferrets ( Mustela nigripes ) are among the most endangered animals in North America. Reintroductions of captive-born ferrets onto prairie dog ( Cynomys spp.) colonies are crucial to the conservation of the species. In September 2007, captive-born ferrets were released on a black-tailed prairie dog ( Cynomys ludovicianus ) colony at the Vermejo Park Ranch, New Mexico. Ferret kits experimentally released in areas of comparatively low and high prairie dog burrow densities were located via spotlight surveys. Some maturing ferret kits were subsequently translocated to areas of low and high burrow densities on nearby prairie dog colonies. For 2 months, fine-scale habitat use was quantified by mapping all burrow openings within a 30-m radius of each ferret location. Spatial statistics accounted for autocorrelation in the burrow densities in areas used by ferrets. It was hypothesized that ferrets would select areas of high burrow densities within colonies; however, burrow densities in areas used by ferrets were generally similar to the available burrow densities. Because ferrets used areas with burrow densities similar to densities available at the colony level and because of the potential energetic benefits for ferrets using areas with high burrow densities, releasing ferrets on colonies with high burrow densities might increase reintroduction success.

New Mexico↗
USGS2011

Use of recent and historical records to estimate status and trends of a rare and imperiled stream fish, Percina jenkinsi (Percidae)

Rarely encountered animals may be present but undetected, potentially leading to incorrect assumptions about the persistence of a local population or the conservation priority of a particular area. The federally endangered and narrowly endemic Conasauga logperch ( Percina jenkinsi ) is a good example of a rarely encountered fish species of conservation concern, for which basic population statistics are lacking. We evaluated the occurrence frequency for this species using surveys conducted with a repeat-observation sampling approach during the summer of 2008. We also analyzed museum records since the late 1980s to evaluate the trends in detected status through time. The results of these analyses provided support for a declining trend in this species over a portion of its historical range, despite low estimated detection probability. We used the results to identify the expected information return for a given level of monitoring where the sampling approach incorporates incomplete detection. The method applied here may be of value where historic occurrence records are available, provided that the assumption of constant capture efficiency is reasonable.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2024

2023-2024 Coastal sage scrub and chaparral community monitoring for western San Diego County

Western San Diego County is dominated by shrublands supporting biologically diverse native plant and animal communities. Widespread urbanization has led to regional habitat loss and fragmentation, and many species in these shrubland communities are rare, threatened, or endangered. Large-scale, multiple-species conservation planning has resulted in a regional preserve system that focuses on these shrubland communities. Several large-scale threats are leading to type conversion from shrub-dominated to non-native invasive annual grass-dominated vegetation. To understand the changes that are occurring to native shrublands, we have developed a vegetation monitoring program with several components at multiple spatial scales, focused on quantifying coastal sage scrub (CSS) and chaparral vegetation community characteristics. Several drivers of change associated with type conversion of native shrubland to non-native annual grassland have been identified by previous research including increasing fire frequency, nitrogen deposition from air pollution, and prolonged and intense drought associated with changing climate. Loss of ecological integrity indices have been proposed as useful measures of the threat of degradation and type conversion of shrublands in San Diego County. For this study, ecological integrity is defined as a system’s ability to maintain species’ relationships and functions comparable to natural habitat in the region. Previous studies have identified the percent cover of invasive non-native annual grasses as a proxy for overall ecological degradation (loss of integrity) that is consistent across native taxonomic groups. Increased cover of non-native grass is associated with lower integrity of the shrubland vegetation community as shrub-associated plant and animal species are replaced by species preferring grassy and disturbed habitats. The objectives of this CSS and chaparral vegetation community monitoring plan are to: 1) Determine the distribution, composition, structure, and integrity of CSS and chaparral vegetation communities on conserved lands in western San Diego County, 2) Identify whether these attributes of the vegetation communities are changing over time, and 3) Evaluate relationships of known drivers of change (threats) and environmental factors in association with changes in vegetation community attributes. The CSS and chaparral vegetation community monitoring program is divided into four components: 1) vegetation mapping, 2) GIS/remote sensing office analysis of landscape-scale data, 3) permanent field plots using Unmanned Aerial Systems (UAS) and field data collections, and 4) animal and target species surveys and rapid assessment protocols. The first component, which is not detailed in this vegetation monitoring plan, aims to map vegetation communities every 10-15 years based on a classification developed for western San Diego County. High resolution aerial imagery will be used to update the 2012 vegetation map and expand it across the entire study area. The second component uses remote sensing models to annually track ecological integrity of shrublands across the study area and will include a map of areas of change and areas of stability over several decades. These landscape-scale integrity classifications will be used to analyze ecological processes, threats, and abiotic factors relative to changes to shrubland ecological integrity over time and space. The third component includes field surveys of 100 permanent plots across areas historically mapped as shrublands. Surveys in the 1930s mapped vegetation types using plot data. By using this historical classification map, we included areas that have already type-converted from shrubland to non-native annual grassland. The plots were split between CSS (55 plots) and chaparral (45 plots) and stratified into four geographical eco-subregions to guarantee coverage over small patches of habitat along the heavily developed coast. Surveys will include the collection of UAS imagery at a very high resolution. Species-level identifications will be made from the imagery based on a plant list compiled of all species detected in the plot during a thorough field survey by botanists, combined with geo-referenced samples of plant species locations. In addition, herbaceous cover will be estimated in the field using nine 1-m diameter circles (one per subplot) to obtain ocular estimates of cover for each plant species within the circle frame. Soil samples will be collected and analyzed for important element compositions. These data will be analyzed to evaluate plot-level ecological integrity based on species composition and cover. Repeated monitoring will allow evaluation of changes in vegetation attributes over time with known drivers or threats and other environmental factors. In addition, analyses will focus on indicator species and various measures of biological diversity for the vegetation communities. Finally, animal species and rare plants will be assessed using either taxa-based rapid assessment protocols or specialized species-specific protocols for rarer species. The purpose of these assessments is to document the status, habitat, and threat covariates of specific species and confirm the species composition and diversity of animal taxonomic groups (e.g., pollinators). Diversity and abundance of animal species at vegetation plots will be used to refine measures and thresholds of ecological integrity. Rapid assessment protocols for animal taxonomic groups can include multiple detection methods such as, camera traps, cover boards, and bird point counts. Pollinators will be monitored at plots using a protocol currently being developed in conjunction with but separately from this plan. Target rare plant species will be monitored using the regional Inspect and Manage (IMG) protocol that measures the status of rare plant occurrences and habitat and threat covariates over time. Species-specific animal survey methods will be refined as these species are prioritized for future monitoring. The goal of this monitoring program is to classify CSS and chaparral vegetation community integrity, identify areas of degradation across western San Diego County, and characterize drivers, and environmental factors associated with loss of ecological integrity. A combination of vegetation mapping, landscape-scale remote sensing, and field plots will be used to address all the aspects of our research questions. Data compiled and collected will be available to conservation partners to help inform future management decisions.

California↗
USGS2015

Assessing the components of adaptive capacity to improve conservation and management efforts under global change

Natural-resource managers and other conservation practitioners are under unprecedented pressure to categorize and quantify the vulnerability of natural systems based on assessment of the exposure, sensitivity, and adaptive capacity of species to climate change. Despite the urgent need for these assessments, neither the theoretical basis of adaptive capacity nor the practical issues underlying its quantification has been articulated in a manner that is directly applicable to natural-resource management. Both are critical for researchers, managers, and other conservation practitioners to develop reliable strategies for assessing adaptive capacity. Drawing from principles of classical and contemporary research and examples from terrestrial, marine, plant, and animal systems, we examined broadly the theory behind the concept of adaptive capacity. We then considered how interdisciplinary, trait- and triage-based approaches encompassing the oft-overlooked interactions among components of adaptive capacity can be used to identify species and populations likely to have higher (or lower) adaptive capacity. We identified the challenges and value of such endeavors and argue for a concerted interdisciplinary research approach that combines ecology, ecological genetics, and eco-physiology to reflect the interacting components of adaptive capacity. We aimed to provide a basis for constructive discussion between natural-resource managers and researchers, discussions urgently needed to identify research directions that will deliver answers to real-world questions facing resource managers, other conservation practitioners, and policy makers. Directing research to both seek general patterns and identify ways to facilitate adaptive capacity of key species and populations within species, will enable conservation ecologists and resource managers to maximize returns on research and management investment and arrive at novel and dynamic management and policy decisions.

Conservation Biology↗
USGS2002

Wildlife association with human‐altered water sources in semiarid vegetation communities

Based on common use in wildlife management, we hypothesized that human‐constructed water sources influence faunal communities detectably compared to similar habitats that lack water. We examined 20 wildlife water units and 20 paired comparison sites without water from April to August 1992 in semiarid southern New Mexico to assess animal species associations. We sampled sites by using small‐mammal live traps, herpetofaunal and invertebrate pitfall arrays, and 30‐minute time‐area counts. We compared animal species richness and species concordance among water units (rain catchments, earthen tanks, and windmills) and comparison sites in three vegetation communities (mixed scrub, grassland, and pinyon‐juniper). We detected 134 animal taxa during field sampling. Animal species richness did not differ between water units and comparison sites among vegetation communities. Amphibians were found only at water units but occur far from units during seasonal wet periods. Greater numbers of individual small mammals and herpetofauna at water units versus comparison sites likely related to debris and disturbed soil present near water units. Taxa detected at water units and comparison sites were 65% concordant overall; discordant taxa were those rarely detected. Our data implied that definitive effects of artificial water sources on native wildlife species were not detectable. Providing water sources may be a strategic management tool but must be viewed critically regarding effect on distribution of native, feral, and exotic animals. Water units should be developed only when and where clear objectives have been stated, natural water sources have been quantified, commitment exists to ensure continued function, and feral and exotic animals will not benefit to the detriment of native species.

New Mexico↗
USGS2019

Global positioning system tracking devices can decrease Greater Sage-Grouse survival

Reliable demographic estimates hinge on the assumption that marking animals does not alter their behavior, reproduction, or survival. Violations can bias inference and are especially egregious for species of high conservation concern. Global positioning system (GPS) devices represent a recent technological advancement that has contributed greatly to avian ecological studies compared with traditionally used very high frequency (VHF) radio transmitters, but may affect demographic rates differently than VHF transmitters. We compared survival between VHF (necklace attachment) and GPS (rump-mounted attachment) devices from >1,100 Greater Sage-Grouse ( Centrocercus urophasianus ), a species of high conservation concern, across multiple populations within California and Nevada. We found lower survival for GPS-marked compared to VHF-marked sage-grouse across most sex, age, and seasonal comparisons. Estimates of annual survival for GPS-marked sage-grouse were 0.55–0.86 times that of VHF-marked birds with considerable variation among sex and age classes. Differences in survival could be attributed to features associated with GPS devices, including greater weight, position of attachment (e.g., rump-mount harness), and a semi-reflective solar panel. In a post hoc analysis, we evaluated additive and interactive effects between device type (GPS vs. VHF) and transmitter mass as a proportion of body mass (PBM). While the device type effect alone was the best model, the PBM interaction also had support. For GPS devices, survival decreased with increasing PBM, whereas PBM effects were not found for VHF. We attributed differences in PBM effect to placement of transmitters on sage-grouse, as weight of GPS devices was positioned rearward. This information can help managers and researchers weigh costs and benefits of GPS-based monitoring. Our results indicate demographic data collected from GPS devices should be interpreted with caution, and use of these devices should be tailored to specific ecological questions. Future research aimed at investigating behavioral impacts and GPS designs that reduce adverse impacts on survival would be beneficial.

California, Nevada↗
USGS2018

Lions and leopards coexist without spatial, temporal or demographic effects of interspecific competition

1. Although interspecific competition plays a principle role in shaping species behaviour and demography, little is known about the population-level outcomes of competition between large carnivores, and the mechanisms that facilitate coexistence. 2. We conducted a multi-landscape analysis of two widely distributed, threatened large carnivore competitors to offer insight into coexistence strategies and assist with species-level conservation. 3. We evaluated how interference competition affects occupancy, temporal activity and population density of a dominant competitor, the lion (Panthera leo), and its subordinate competitor, the leopard (Panthera pardus). We collected camera-trap data over three years in ten study sites covering 5,070 km2. We used multispecies occupancy modelling to assess spatial responses in varying environmental and prey conditions and competitor presence, and examined temporal overlap and the relationship between lion and leopard densities across sites and years. 4. Results showed that both lion and leopard occupancy was independent of – rather than conditional on – their competitor’s presence across all environmental covariates. Marginal occupancy probability for leopard was higher in areas with more bushy, ‘hideable’ habitat, human (tourist) activity and topographic ruggedness, whereas lion occupancy decreased with increasing hideable habitat and increased with higher abundance of very large prey. Temporal overlap was high between carnivores and there was no significant relationship between species densities. 4. Lions pose a threat to the survival of individual leopards, but they exerted no tractable influence on leopard spatial or temporal dynamics. Furthermore, lions did not appear to suppress leopard populations, suggesting that intraguild competitors can coexist in the same areas without population decline. Aligned conservation strategies that promote functioning ecosystems, rather than target individual species, are therefore suggested to achieve cost- and space-effective conservation.

Journal of Animal Ecology↗
USGS2013

Permeability of roads to movement of scrubland lizards and small mammals

A primary objective of road ecology is to understand and predict how roads affect connectivity of wildlife populations. Road avoidance behavior can fragment populations, whereas lack of road avoidance can result in high mortality due to wildlife-vehicle collisions. Many small animal species focus their activities to particular microhabitats within their larger habitat. We sought to assess how different types of roads affect the movement of small vertebrates and to explore whether responses to roads may be predictable on the basis of animal life history or microhabitat preferences preferences. We tracked the movements of fluorescently marked animals at 24 sites distributed among 3 road types: low-use dirt, low-use secondary paved, and rural 2-lane highway. Most data we collected were on the San Diego pocket mouse ( Chaetodipus fallax ), cactus mouse ( Peromyscus eremicus ), western fence lizard ( Sceloporus occidentalis ), orange-throated whiptail ( Aspidoscelis hyperythra ), Dulzura kangaroo rat ( Dipodomys simulans ) (dirt, secondary paved), and deer mouse (Peromyscus maniculatus) (highway only). San Diego pocket mice and cactus mice moved onto dirt roads but not onto a low-use paved road of similar width or onto the highway, indicating they avoidpaved road substrate. Both lizard species moved onto the dirt and secondary paved roads but avoided the rural 2-lane rural highway, indicating they may avoid noise, vibration, or visual disturbance from a steady flow of traffic. Kangaroo rats did not avoid the dirt or secondary paved roads. Overall, dirt and secondary roads were more permeable to species that prefer to forage or bask in open areas of their habitat, rather than under the cover of rocks or shrubs. However, all study species avoided the rural 2-lane highway. Our results suggest that microhabitat use preferences and road substrate help predict species responses to low-use roads,but roads with heavy traffic may deter movement of a much wider range of small animal species.

California↗
USGS2021

Intended consequences statement

As the biodiversity crisis accelerates, the stakes are higher for threatened plants and animals. Rebuilding the health of our planet will require addressing underlying threats at many scales, including habitat loss and climate change. Conservation interventions such as habitat protection, management, restoration, predator control, translocation, genetic rescue, and biological control have the potential to help threatened or endangered species avert extinction. These existing, well-tested methods can be complemented and augmented by more frequent and faster adoption of new technologies, such as powerful new genetic tools. In addition, synthetic biology might offer solutions to currently intractable conservation problems. We believe that conservation needs to be bold and clear-eyed in this moment of great urgency.

Conservation Science and Practice↗
USGS2003

U.S. Geological Survey Activities Related to American Indians and Alaska Natives Fiscal Year 2003

Introduction Information is a resource for Native American governments, communities, organizations, and people. The U.S. Geological Survey (USGS) provides technical expertise, reports, and other impartial information sources that benefit Native Americans interested in subsistence issues, water, resources and land use, and the health of many parts of the environment. Native decisions based in USGS data and analyses support the goals of Native self-sufficiency, economic development, and conservation. The USGS works in cooperation with American Indian and Alaska Native governments, conducting research on: water energy and mineral resources; animals and plants of environmental, economic, or subsistence importance; and natural hazards. Digital data on cartography, energy and mineral resources, streamflow, biota, and other topics are available to American Indian and Alaska Native individuals and institutions. The USGS also recognizes the need to learn from and share knowledge with Native peoples. This report describes most of the activities that the USGS conducted with American Indian and Alaska Native governments, educational institutions, and individuals during Federal fiscal year (FY) 2003. Some of these USGS activities were conducted cooperatively with the Bureau of Indian Affairs (BIA) or other Federal entities. Others were collaborations with Tribes, Tribal organizations, and professional societies.

Report↗
USGS1979

Investigations by the U.S. Geological Survey of soil and moisture conservation on public domain lands, 1941-1964

The passage of the Taylor Grazing Act in 1934 marked the end of an era in the land policies in the United States in that disposal of the public lands by homesteading was terminated except under rigidly prescribed procedures, and the remaining public lands covering about 175 million acres in the western conterminous states were brought under regulatory authority for grazing use. In 1934 the lands were mostly in a severe state of deterioration as a result of overgrazing and drought. In addition to reducing numbers of livestock using the lands, successive programs of conservation practices were established of which the Soil and Moisture Conservation Program of the Department of the Interior is of particular interest here. The services of the Geological Survey, in an investigational and advisory capacity were enlisted in this program. The work of the Geological Survey has consisted of the collection of hydrologic data, investigations of range-water supplies to facilitate management and provide information for design of structures and land-treatment measures. Appraisal of the effects of treatment practices has also been an important activity. Conservation on the public domain involves mainly growing vegetation for forage and reducing erosion. The two elements are intimately related--accomplishment in one is usually reflected by an improvement in the other. Erosion is a serious problem on most of the public domain, but particularly in the Colorado River and Rio Grande basins where, despite low annual water yields, the public domain and similar lands on the Indian reservations contribute the major part of the sediment measured at the downstream gaging stations. In parts of the Missouri River basin also, erosion is obviously very active but the sediment yield contributed by the public domain cannot be as readily isolated. The reasons for the erosion are generally evident--the erodibility of the rock and soils and the sparsity of vegetation as a result of low precipitation, unfavorable soils, or past land use. How much is due to the land use is still controversial, resulting in many questions relative to planning corrective measures. The problem facing the early administrators of the Taylor Grazing Act to bring about proper use and conservation of the public domain was a difficult one because of the lack of records on actual grazing use in animal-unit months of the qualified allottees and the lack of data on treatment practices in an arid area. Reduction of grazing was imperative in some localities, but generally, it could not be brought about as rapidly as it should have been. Numbers of animal units in the grazing districts were reduced from about 3.6 million in 1941 to about 3.2 million in 1964, whereas the areas included in districts was increased about 3 percent. Reductions are still being made in certain areas where deterioration is evident. One of the earliest activities connected with management of the range was the development of water supplies to facilitate the distribution of grazing. The investigations needed for such development formed a large part of the early work in the Soil and Moisture program of the Geological Survey and has continued to be a major activity to the present time. Most of the work has involved investigations of sites for wells but has included also the investigation of proposed spring developments and collection of hydrologic data for use in reservoir design. Well-site investigations have been of two general types: (1) the investigation of a site selected by the land administration agency, and (2) an areal investigation covering entire grazing districts or units thereof. In each type of investigation, a study is made of the geology and the recharge conditions. Reports are prepared giving estimates of the depth of drilling required, the depth to water, the yield, and the quality of the water, together with other information on drilling conditions and developing. Springs are a significant so

Open-File Report↗
USGS2023

Attitudes of the Wildlife Society members toward uses of wildlife

Large-scale sociological, geographic, and demographic changes affect the way people interact with and value wildlife. Beliefs and attitudes of stakeholders towards wildlife and uses of wildlife are also shifting along with these geographical and demographic changes. Changes in societal or professional attitudes toward uses of wildlife has potential to create alignment issues between wildlife professionals and society. To inform deliberations within The Wildlife Society (TWS) and the larger population of conservation professionals, we assessed and compared the change over time between 1998 and 2020 in value orientations, beliefs, and attitudes toward uses of wildlife and wildlife management practices of members of TWS as a proxy for practicing wildlife professionals. We administered a Qualtrics web-based survey ( n = 3,247), January–March 2020. Respondents closely approximated TWS membership demographically, who identified as male (59.7%) and female (37.7%), and geographically within 50 U.S. states at the time of the survey. Results indicated wildlife conservation professionals express as broad of a spectrum of beliefs, albeit shifting, about consumptive uses of wildlife in hunting and trapping much as they did 2 decades ago. Change in attitudes and beliefs was modest but mutualistic or protectionist beliefs and attitudes increased, especially among younger professionals, toward the ethical acceptability of harvested animals involving fair chase and sportsmanship (72% in 1998; 93.2% in 2020), and in expressed acceptance of regulated hunting and trapping. Our work provides insights into potential focus areas of training and education, such as Conservation Leaders for Tomorrow and Trapping Matters.

Article↗
USGS2022

A statistical framework for modelling migration corridors

1. Management of animal populations requires spatially explicit knowledge of movement corridors, such as those used during seasonal migrations. GPS tracking data allows for mapping of corridors from directly observed movements, providing important insights, but tracking data is absent for many populations. 2. We developed a novel statistical corridor modeling approach that predicts movement corridors from cost-distance movement models fit directly to migration tracking data. Unlike existing predictive approaches, this does not require the ad-hoc transformation of habitat suitability surfaces into resistance surfaces. We tested the ability of the approach to recover parameters used to generate simulated movements. We then used GPS data from three migrating mule deer (Odocoileus hemionus) herds in Idaho and Wyoming to model corridors as a function of elevation, slope, aspect, percent shrub, date of peak green-up, snow-off date, and human footprint. We assessed the predictive ability of the fitted models using validation tracks from the same herd as well as from the other herds. 3. The approach reproduced parameters used to generate the simulated movements, predicted the corridors used by migratory populations, and described the direction, magnitude, and confidence levels of the effects of environmental variables on corridors. The effects environmental variables had on corridors differed depending on the herd. Within-herd validation indicated that fitted corridor models are more accurate at predicting migration corridors than null models, and cross-herd validation indicated that fitted models for some herds accurately predicted the observed migrations of other herds. 4. In addition to the practical benefit of mapping corridors for management, our statistical corridor modeling framework sets the stage for evaluating fundamental questions about the fitness tradeoffs, navigation, learning, fidelity, and movement constraints that influence migratory and other corridor-generating behavior. Models of predictive corridors can inform management and planning for the conservation of migrations across taxa, including the potential restoration of corridors. Our corridor modeling approach is also readily applied to non-migratory animal movements.

Idaho, Wyoming↗
USGS2024

Inconsistent transcriptomic responses to hexabromocyclododecane in Japanese quail: A comparative analysis of results from four different study designs

Efforts to use transcriptomics for toxicity testing have classically relied on the assumption that chemicals consistently produce characteristic transcriptomic signatures that are reflective of their mechanism of action. However, the degree to which transcriptomic responses are conserved across different test methodologies has seldom been explored. With increasing regulatory demand for New Approach Methods (NAMs) that use alternatives to animal models and high‐content approaches such as transcriptomics, this type of comparative analysis is needed. We examined whether common genes are dysregulated in Japanese quail ( Coturnix japonica ) liver following sublethal exposure to the flame retardant hexabromocyclododecane (HBCD), when life stage and test methodologies differ. The four exposure scenarios included one NAM: Study 1—early‐life stage (ELS) exposure via a single egg injection, and three more traditional approaches; Study 2—adult exposure using a single oral gavage; Study 3—ELS exposure via maternal deposition after adults were exposed through their diet for 7 weeks; and Study 4—ELS exposure via maternal deposition and re‐exposure of nestlings through their diet for 17 weeks. The total number of differentially expressed genes (DEGs) detected in each study was variable (Study 1, 550; Study 2, 192; Study 3, 1; Study 4, 3) with only 19 DEGs shared between Studies 1 and 2. Factors contributing to this lack of concordance are discussed and include differences in dose, but also quail strain, exposure route, sampling time, and HBCD stereoisomer composition. The results provide a detailed overview of the transcriptomic responses to HBCD at different life stages and routes of exposure in a model avian species and highlight certain challenges and limits of comparing transcriptomics across different test methodologies.

Environmental Toxicology and Chemistry↗
USGS2025

A compilation pipeline for wildlife tracking datasets collected from ground-based and satellite-based telemetry transmission devices

Wildlife conservation planning increasingly requires collaboration and integration of research from discrete studies spanning large geographic areas. Tracking datasets are essential for analyzing animal movements and species distributions in relation to environmental conditions and combining them can enable powerful analyses to further aid planning efforts. However, combining datasets necessitates addressing variation in study designs, tracking methodologies, location uncertainty, and data attributes. We outline a compilation pipeline to integrate ground-based and satellite-based telemetry tracking datasets, motivated from our work with greater sage-grouse ( Centrocercus urophasianus ), a highly imperiled species of western North America. Our objective was to create a database with a standardized set of attributes to facilitate filtering locations for spatial analyses. Our pipeline phases are: (1) dataset pre-processing, (2) formatting individual datasets to a common template, (3) dataset binding, (4) error checking, and (5) filtering. Our pipeline includes additional functionality to identify coordinates from recurrently visited locations (e.g., nest sites), which may be of special interest. The final compiled sage-grouse database included nearly 5 million locations collected from 53 datasets and over 19,000 birds tracked from 1980 to 2022, including over 11,000 nest locations. Our error checks flagged 3.9 % of locations as likely errors, predominantly collected from satellite-based telemetry transmissions. We demonstrate the ability of our pipeline to identify nest locations and flag erroneous locations by applying it to simulated tracking datasets. Overall, our workflow offers a transferable approach for researchers aiming to standardize wildlife telemetry datasets and conduct ecological analyses for both individual studies and large-scale collaborations.

California, Colorado, Idaho, Montana, Nevada, Nort↗
USGS2010

A rapid, strong, and convergent genetic response to urban habitat fragmentation in four divergent and widespread vertebrates

Background: Urbanization is a major cause of habitat fragmentation worldwide. Ecological and conservation theory predicts many potential impacts of habitat fragmentation on natural populations, including genetic impacts. Habitat fragmentation by urbanization causes populations of animals and plants to be isolated in patches of suitable habitat that are surrounded by non-native vegetation or severely altered vegetation, asphalt, concrete, and human structures. This can lead to genetic divergence between patches and in turn to decreased genetic diversity within patches through genetic drift and inbreeding. Methodology/Principal Findings: We examined population genetic patterns using microsatellites in four common vertebrate species, three lizards and one bird, in highly fragmented urban southern California. Despite significant phylogenetic, ecological, and mobility differences between these species, all four showed similar and significant reductions in gene flow over relatively short geographic and temporal scales. For all four species, the greatest genetic divergence was found where development was oldest and most intensive. All four animals also showed significant reduction in gene flow associated with intervening roads and freeways, the degree of patch isolation, and the time since isolation. Conclusions/Significance: Despite wide acceptance of the idea in principle, evidence of significant population genetic changes associated with fragmentation at small spatial and temporal scales has been rare, even in smaller terrestrial vertebrates, and especially for birds. Given the striking pattern of similar and rapid effects across four common and widespread species, including a volant bird, intense urbanization may represent the most severe form of fragmentation, with minimal effective movement through the urban matrix.

California↗
USGS2010

Systematic status of wild Canis in North-central Texas

Skulls of wild Canis collected 2003–2004 in north-central Texas are morphometrically similar to a series taken there and in nearby areas in 1964–1971, which was considered to represent a population of Coyotes ( C. latrans ) modified through introgression from Red Wolves ( C. rufus ). A few of the new specimens closely resemble small examples of Red Wolves. Such affinity is supported by authoritative examination of living and videotaped animals. The persistence of influence of Red Wolves, long after presumed extirpation through hybridization and human persecution, may be relevant to wolf conservation.

Texas↗