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Proceedings of a workshop on American Eel passage technologies

Recent concerns regarding a decline in recruitment of American eels ( Anguilla rostrata ) have prompted efforts to restore this species to historic habitats by providing passage for both upstream migrant juveniles and downstream migrant adults at riverine barriers, including low-head and hydroelectric dams (Castonguay et al. 1994, Haro et al. 2000). These efforts include development of management plans and stock assessment reviews in both the US and Canada (COSEWIC 2006, Canadian Eel Working Group 2009, DFO 2010, MacGregor et al. 2010, ASMFC 2000, ASMFC 2006, ASMFC 2008, Williams and Threader 2007), which target improvement of upstream and downstream passage for eels, as well as identification and prioritization of research needs for development of new and more effective passage technologies for American eels. Traditional upstream fish passage structures, such as fishways and fish lifts, are often ineffective passing juvenile eels, and specialized passage structures for this species are needed. Although designs for such passage structures are available and diverse (Knights and White 1998, Porcher 2002, FAO/DVWK 2002, Solomon and Beach 2004a,b, Environment Agency UK 2011), many biologists, managers, and engineers are unfamiliar with eel pass design and operation, or unaware of the technical options available for upstream eel passage, Better coordination is needed to account for eel passage requirements during restoration efforts for other diadromous fish species. Also, appropriately siting eel passes at hydropower projects is critical, and siting can be difficult and complex due to physical restrictions in access to points of natural concentrations of eels, dynamic hydraulics of tailrace areas, and presence of significant competing flows from turbine outfalls or spill. As a result, some constructed eel passes are sited poorly and may pass only a fraction of the number of eels attempting to pass the barrier. When sited and constructed appropriately, however, eel passes can effectively pass thousands of individuals in a season (Appendix D). technologies for preventing impingement and entrainment mortality and injury of downstream migrant eels at hydropower projects are not well developed. Traditional downstream fish passage mitigative techniques originally developed for salmonids and other species are frequently ineffective passing eels (Richkus and Dixon 2003, EPRI 2001, Bruijs and Durif 2009). Large hydropower projects, with high project flows or intake openings that cannot be fitted with racks or screens with openings small enough to exclude eels, pose significant passage problems for this species, and turbine impingement and entrainment mortality of eels can be as high as 100%. Spill mortality and injury may also be significant for eels, given their tendency to move during high flow events when projects typically spill large amounts of flow. Delays in migration of eels that have difficulty locating and utilizing bypass entrances can also be significant. Therefore, downstream passage technologies are at a much more nebulous state of development than upstream passage technologies, and require further evaluation and improvement before rigorous design guidelines can be established. There have been few studies conducted to evaluate effectiveness of current mitigative measures for both upstream and downstream passage of eels. Research is needed to determine eel migratory timing, behavior, and appropriate mitigation technologies for specific sites and eel life history stages. Both upstream and downstream eel passage structures can be difficult to evaluate in terms of performance, and examples of how evaluation and monitoring can be accomplished were reviewed at the workshop.

Report

Selected contributions to ground-water hydrology by C.V. Theis, and a review of his life and work

This publication highlights two previously unpublished papers by C.V. Theis; each is augmented with a discussion that explains why he wrote the paper, attempts to discern why he did not publish the paper, and amplifies the information with reference material not included by Theis. 'A Primer on Anisotropy' was written in the early 1970's to provide practicing hydrogeologists of the day with a method of analyzing ground-water problems involving anisotropic hydraulic-conductivity distribution without using tensor mathematics. The equations were developed for horizontal flow through dipping beds with differing conductivities parallel and perpendicular to the bedding and for flow through dipping beds having three different hydraulic conductivities, one perpendicular to the bedding and two others parallel to the bedding, at an angle to the strike of the beds. Although most colleagues who reviewed the primer in the early 1970's encouraged its publication enthusiastically, at least one suggested the addition of some examples in which the method would be demonstrated. Handwritten notes from Theis' files indicate that he may have worked on some examples and possibly other additions to the paper. The comments by Charles A. Appel include some examples of the primer's use and augment the presentation with references to relevant published papers, both those available to Theis but not cited by him, and subsequent publications. 'Aquifers, Ground-Water Bodies, and Hydrophers' was written in the early 1980's as an attempt to clarify the semantic and conceptual confusion in the use of the term aquifer, applied by some investigators to the saturated part of a permeable formation and by others to the entire permeable formation. The physical distinction between the aquifer and the ground-water body is emphasized, and the term hydropher is proposed to describe the saturated part of a permeable formation. Theis' interest in and familiarity with the French literature on ground water was the basis for a discussion of the French usage, which eschews the term aquifer. The analysis and critique of Theis' palzler explains the 1835 paper from which aquifer was reportedly derived, and provides further justification for the term hydropher. Theis' more important contributions to ground-water hydrology were outgrowths of his solutions to small local water problems based on field investigations. The biographical sketch, drawing extensively from a partial autobiography that Theis had dictated, reveals both the reasons for and the intellectual processes that led to his development of the nonequilibrium concept of ground-water hydraulics. The sketch also describes the background of the man, reviews his career, and portrays the admiration and respect he elicited from his colleagues and associates. The magnitude of Theis' contribution to the science of ground-water hydrology, to the appraisal of the water resources of New Mexico, and to the early research on ground disposal of radioactive wastes is evident from the bibliography of his writings, which includes 168 reports, many of them unpublished. The evolution of his thinking about the role of geologic inhomogeneities in mass transport, conceptualized but not quantified, was the major contribution of the latter part of his career.

Water Supply Paper

Plan to coordinate post-earthquake investigations supported by the National Earthquake Hazards Reduction Program (NEHRP)

Introduction This report presents a plan supported by the National Earthquake Hazards Reduction Program (NEHRP) to coordinate domestic and international post-earthquake investigations (herein called “the Plan”). Post-earthquake scientific and engineering investigations are undertaken to capture critical information to understand the causes and impacts of the event, lessons from which can substantially improve the Nation’s resilience after future earthquakes. NEHRP is the Federal Government’s coordinated nationwide program to reduce risks to life and property from earthquakes. The Plan describes the activation and coordination of the four designated NEHRP Agencies in the Federal Government: Federal Emergency Management Agency, National Institute of Standards and Technology, U.S. National Science Foundation, and U.S. Geological Survey (USGS). The Plan also describes coordination between NEHRP Agencies and other organizations that may participate in pre-event and post-earthquake investigations, including non-NEHRP Federal agencies; State, regional, local, Tribal, and territorial agencies; domestic nongovernmental organizations; academic institutions and affiliated organizations; private companies; foreign governmental agencies and nongovernmental organizations; and international organizations. The Plan delineates the coordination of NEHRP post-earthquake scientific and engineering investigations to document the direct, indirect, and cascading physical and societal impacts from fault rupture and ground shaking hazards and from secondary hazards such as landslides, liquefaction, and tsunamis. In addition, the Plan identifies pre-event activities necessary to ensure that post-earthquake investigations are executed effectively. The USGS is the lead NEHRP Agency for activating and coordinating NEHRP post-earthquake investigations and for implementing this Plan. The USGS also leads coordination of the NEHRP Agencies in completing the pre-event activities identified in the Plan. The Plan has new information and supersedes USGS Circular 1242, “The Plan to Coordinate NEHRP Post-Earthquake Investigations,” which was published in 2003. This second-generation Plan was developed with the assistance of the Applied Technology Council (ATC) of Redwood City, California, under USGS contract 140G0121P0309, ATC-155. A 17-member Project Review Panel provided guidance on plan development, and input was solicited from subject matter experts representing key stakeholder groups and from participants at a public workshop.

Circular

Applied Geochemistry Special Issue on Environmental geochemistry of modern mining

Environmental geochemistry is an integral part of the mine-life cycle, particularly for modern mining. The critical importance of environmental geochemistry begins with pre-mining baseline characterization and the assessment of environmental risks related to mining, continues through active mining especially in water and waste management practices, and culminates in mine closure. The enhanced significance of environmental geochemistry to modern mining has arisen from an increased knowledge of the impacts that historical and active mining can have on the environment, and from new regulations meant to guard against these impacts. New regulations are commonly motivated by advances in the scientific understanding of the environmental impacts of past mining. The impacts can be physical, chemical, and biological in nature. The physical challenges typically fall within the purview of engineers, whereas the chemical and biological challenges typically require a multidisciplinary array of expertise including geologists, geochemists, hydrologists, microbiologists, and biologists. The modern mine-permitting process throughout most of the world now requires that potential risks be assessed prior to the start of mining. The strategies for this risk assessment include a thorough characterization of pre-mining baseline conditions and the identification of risks specifically related to the manner in which the ore will be mined and processed, how water and waste products will be managed, and what the final configuration of the post-mining landscape will be. In the Fall 2010, the Society of Economic Geologists held a short course in conjunction with the annual meeting of the Geological Society of America in Denver, Colorado (USA) to examine the environmental geochemistry of modern mining. The intent was to focus on issues that are pertinent to current and future mines, as opposed to abandoned mines, which have been the focus of numerous previous short courses. The geochemical challenges of current and future mines share similarities with abandoned mines, but differences also exist. Mining and ore processing techniques have changed; the environmental footprint of waste materials has changed; environmental protection has become a more integral part of the mine planning process; and most historical mining was done with limited regard for the environment. The 17 papers in this special issue evolved from the Society of Economic Geologists’ short course. The relevant geochemical processes encompass the source, transport, and fate of contaminants related to the life cycle of a mine. Contaminants include metals and other inorganic species derived from geologic sources such as ore and solid mine waste, and substances brought to the site for ore processing, such as cyanide to leach gold. Factors, such as mine-waste mineralogy, hydrologic setting, mine-drainage chemistry, and microbial activity, that affect the hydrochemical risks from mining are reviewed by Nordstrom et al. In another paper, Nordstrom discusses baseline characterization at mine sites in a regulatory framework, and emphasizes the influence of mineral deposits in producing naturally elevated concentrations of many trace elements in surface water and groundwater. Surface water quality in mineralized watersheds is influenced by a number of processes that act on daily (diel) cycles and can produce dramatic variations in trace element concentrations as described by Gammons et al. Pre-mining baseline characterization studies should strive to capture the magnitude of these diel variations. Desbarats et al., using a case study of mine drainage from a gold mine, illustrate how elements that commonly occur as negatively charged species (anions) in solution, such as arsenic as arsenate, behave in an opposite fashion than most metals, which occur as positively charged species (cations). Significant improvement in the understanding of factors that influence the toxicity of metals to aquatic organisms in surface water has highlighted the importance of aqueous chemistry, particularly dissolved organic carbon, as described by Smith et al. Stream sediment contamination is another important pathway for affecting aquatic organisms, as reviewed by Besser et al. Understanding and predicting environmental consequences from mining begins with knowing the mineralogy and mineral reactivity of the ore, the wastes, and of secondary minerals formed later. Jamieson et al. review the importance of mineralogical studies in mine planning and remediation. A number of types of site-specific studies are needed to identify environmental risks related to individual mines. Lapakko reviews the general framework of mine waste characterization studies that are integral to the mine planning process. Hageman et al. present a comparative study of several static tests commonly used to characterize mine waste. The mining and ore processing practices employed at a specific mine site will vary on the basis of the commodities being targeted, the geology of the deposit, the geometry of the deposit, and the mining and ore processing methods used. Thus, these factors, in addition to the waste management practices used, can result in a variety of end-member mine waste features, each of which has its own set of challenges. Open pit mines and underground mines require waste rock to be removed to access ore. Waste rock presents unique problems because the rock is commonly mineralized at sub-economic grades and has not been processed to remove potentially problematic minerals, such as pyrite. Amos et al. examine the salient aspects of the geochemistry of waste rock. Mill tailings – the waste material after ore minerals have been removed – are a volumetrically important solid waste at many mine sites. Their fine grain size and the options for their management make their behavior in the environment distinct from that of waste rock. Lindsay et al. describe some of these differences through three case-study examples. Subaqueous disposal of tailings is another option described by Moncur et al. Cyanide leaching for gold extraction is a common method throughout the world. Johnson describes environmental aspects of cyanidation. Uranium mining presents unique environmental challenges, particularly since in-situ recovery has seen widespread use. Campbell et al. review the environmental geochemistry of uranium mining and current research on bioremediation. Ore concentrates from many types of metal mining undergo a pyrometallurgical technique known as smelting to extract the metal. Slag is the result of smelting, and it may be an environmental liability or a valuable byproduct, as described by Piatak et al. Finally, the open pits that result from surface mining commonly reach below the water table. At the end of mining, these pits may fill to form lakes that become part of the legacy of the mine. Castendyk et al., in two papers, review theoretical aspects of the environmental limnology of pit lakes. They also describe approaches that have been used to model pit lake water balance, wall-rock contributions to pit lake chemistry, pit lake water quality, and limnological processes, such as vertical mixing, through the use of three case studies.

Applied Geochemistry

Mars chronology: Assessing techniques for quantifying surficial processes

Currently, the absolute chronology of Martian rocks, deposits and events is based mainly on crater counting and remains highly imprecise with epoch boundary uncertainties in excess of 2 billion years. Answers to key questions concerning the comparative origin and evolution of Mars and Earth will not be forthcoming without a rigid Martian chronology, enabling the construction of a time scale comparable to Earth's. Priorities for exploration include calibration of the cratering rate, dating major volcanic and fluvial events and establishing chronology of the polar layered deposits. If extinct and/or extant life is discovered, the chronology of the biosphere will be of paramount importance. Many radiometric and cosmogenic techniques applicable on Earth and the Moon will apply to Mars after certain baselines (e.g. composition of the atmosphere, trace species, chemical and physical characteristics of Martian dust) are established. The high radiation regime may pose a problem for dosimetry-based techniques (e.g. luminescence). The unique isotopic composition of nitrogen in the Martian atmosphere may permit a Mars-specific chronometer for tracing the time-evolution of the atmosphere and of lithic phases with trapped atmospheric gases. Other Mars-specific chronometers include measurement of gas fluxes and accumulation of platinum group elements (PGE) in the regolith. Putting collected samples into geologic context is deemed essential, as is using multiple techniques on multiple samples. If in situ measurements are restricted to a single technique it must be shown to give consistent results on multiple samples, but in all cases, using two or more techniques (e.g. on the same lander) will reduce error. While there is no question that returned samples will yield the best ages, in situ techniques have the potential to be flown on multiple missions providing a larger data set and broader context in which to place the more accurate dates. ?? 2004 Elsevier B.V. All rights reserved.

Earth-Science Reviews

Prioritizing pesticide compounds for analytical methods development

The U.S. Geological Survey (USGS) has a periodic need to re-evaluate pesticide compounds in terms of priorities for inclusion in monitoring and studies and, thus, must also assess the current analytical capabilities for pesticide detection. To meet this need, a strategy has been developed to prioritize pesticides and degradates for analytical methods development. Screening procedures were developed to separately prioritize pesticide compounds in water and sediment. The procedures evaluate pesticide compounds in existing USGS analytical methods for water and sediment and compounds for which recent agricultural-use information was available. Measured occurrence (detection frequency and concentrations) in water and sediment, predicted concentrations in water and predicted likelihood of occurrence in sediment, potential toxicity to aquatic life or humans, and priorities of other agencies or organizations, regulatory or otherwise, were considered. Several existing strategies for prioritizing chemicals for various purposes were reviewed, including those that identify and prioritize persistent, bioaccumulative, and toxic compounds, and those that determine candidates for future regulation of drinking-water contaminants. The systematic procedures developed and used in this study rely on concepts common to many previously established strategies. The evaluation of pesticide compounds resulted in the classification of compounds into three groups: Tier 1 for high priority compounds, Tier 2 for moderate priority compounds, and Tier 3 for low priority compounds. For water, a total of 247 pesticide compounds were classified as Tier 1 and, thus, are high priority for inclusion in analytical methods for monitoring and studies. Of these, about three-quarters are included in some USGS analytical method; however, many of these compounds are included on research methods that are expensive and for which there are few data on environmental samples. The remaining quarter of Tier 1 compounds are high priority as new analytes. The objective for analytical methods development is to design an integrated analytical strategy that includes as many of the Tier 1 pesticide compounds as possible in a relatively few, cost-effective methods. More than 60 percent of the Tier 1 compounds are high priority because they are anticipated to be present at concentrations approaching levels that could be of concern to human health or aquatic life in surface water or groundwater. An additional 17 percent of Tier 1 compounds were frequently detected in monitoring studies, but either were not measured at levels potentially relevant to humans or aquatic organisms, or do not have benchmarks available with which to compare concentrations. The remaining 21 percent are pesticide degradates that were included because their parent pesticides were in Tier 1. Tier 1 pesticide compounds for water span all major pesticide use groups and a diverse range of chemical classes, with herbicides and their degradates composing half of compounds. Many of the high priority pesticide compounds also are in several national regulatory programs for water, including those that are regulated in drinking water by the U.S. Environmental Protection Agency under the Safe Drinking Water Act and those that are on the latest Contaminant Candidate List. For sediment, a total of 175 pesticide compounds were classified as Tier 1 and, thus, are high priority for inclusion in analytical methods available for monitoring and studies. More than 60 percent of these compounds are included in some USGS analytical method; however, some are spread across several research methods that are expensive to perform, and monitoring data are not extensive for many compounds. The remaining Tier 1 compounds for sediment are high priority as new analytes. The objective for analytical methods development for sediment is to enhance an existing analytical method that currently includes nearly half of the pesticide compounds in Tier 1 by adding as many additional Tier 1 compounds as are analytically compatible. About 35 percent of the Tier 1 compounds for sediment are high priority on the basis of measured occurrence. A total of 74 compounds, or 42 percent, are high priority on the basis of predicted likelihood of occurrence according to physical-chemical properties, and either have potential toxicity to aquatic life, high pesticide useage, or both. The remaining 22 percent of Tier 1 pesticide compounds were either degradates of Tier 1 parent compounds or included for other reasons. As with water, the Tier 1 pesticide compounds for sediment are distributed across the major pesticide-use groups; insecticides and their degradates are the largest fraction, making up 45 percent of Tier 1. In contrast to water, organochlorines, at 17 percent, are the largest chemical class for Tier 1 in sediment, which is to be expected because there is continued widespread detection in sediments of persistent organochlorine pesticides and their degradates at concentrations high enough for potential effects on aquatic life. Compared to water, there are fewer available benchmarks with which to compare contaminant concentrations in sediment, but a total of 19 Tier 1 compounds have at least one sediment benchmark or screening value for aquatic organisms. Of the 175 compounds in Tier 1, 77 percent have high aquatic-life toxicity, as defined for this process. This evaluation of pesticides and degradates resulted in two lists of compounds that are priorities for USGS analytical methods development, one for water and one for sediment. These lists will be used as the basis for redesigning and enhancing USGS analytical capabilities for pesticides in order to capture as many high-priority pesticide compounds as possible using an economically feasible approach.

Scientific Investigations Report

Ungulate migration in a changing climate—An initial assessment of climate impacts, management priorities, and science needs

Executive Summary Migratory behavior among ungulates in the Western United States occurs in response to changing forage quality and quantity, weather patterns, and predation risk. As snow melts and vegetation green-up begins in late spring and early summer, many migratory ungulates leave their winter range and move to higher elevation summer ranges to access high-quality forage and areas with vegetative cover for protection during fawning. Ungulates remain on these ranges until the fall when increasing snowfall and decreasing temperatures trigger them to migrate back to their lower elevation winter ranges. While researchers have begun to assess the effects of physical barriers such as roads and energy infrastructure on migration, less attention has been paid to understanding how changing climate conditions might affect ungulate movements and range habitats. Does earlier spring green-up make ungulates leave their winter ranges sooner? Do persistent drought conditions reduce the carrying capacity of seasonal range habitats or lead to shifts in migration pathways? These and other questions remain largely unanswered but could have cascading effects on ungulate population dynamics and migratory behavior. In February 2018, the Secretary of the Interior signed Department of the Interior Secretarial Order 3362 (SO3362), “Improving Habitat Quality in Western Big-Game Winter Range and Migration Corridors.” The order, which focuses on elk, mule deer, and pronghorn in 11 Western States, directs the Bureau of Land Management (BLM), the U.S. Fish and Wildlife Service (FWS), the National Park Service (NPS), and the U.S. Geological Survey (USGS) to partner with State wildlife agencies on their priorities and objectives for identifying and conserving ungulate migration corridors and winter-range habitat. The USGS Climate Adaptation Science Centers (CASCs) were established to help managers of the Nation’s fish, wildlife, waters, and lands understand the effects of climate change and adapt to changing conditions. To support the recent Department of the Interior (DOI) emphasis on ungulate migration corridors and winter-range habitat, this report assesses current information on how climate change could affect elk, mule deer, and pronghorn migration. The report synthesizes the drivers of migration, outlines what is known about how climate change might affect these drivers, and summarizes management priorities and science needs related to ungulate migration corridors and range habitat. A review of the literature on ungulate migration shows that the core drivers of spring migration are the timing of spring green-up and snowmelt, and the core driver of fall migration is winter severity. After exploring what is known about how these drivers affect or could be affected by climate change, several pathways through which ungulate migration could be altered were identified: (1) ungulates alter migration timing to better track plant phenology or in response to changes in winter conditions; (2) ungulates change their migration route or distance traveled during migration to accommodate changes in environmental conditions; and (3) ungulate populations that are currently migratory may begin to demonstrate interannual variability in whether they migrate, depending on environmental conditions and density-dependence, and may remain resident for sets of consecutive years. Through discussions with managers, physical barriers to movement such as roads and fences were identified as a core concern. In addition, the primary research needs of States are the acquisition and analysis of data on ungulate movements, to refine delineation of winter range, summer range, and corridors, and to support a better understanding of how ungulates use these habitats. When it comes to understanding climate effects, managers were more concerned with understanding the vulnerability of winter- and summer-range habitats than the vulnerability of migration corridors because of the influence of summer and winter forage on ungulate condition and reproductive success. Managers were also concerned about how forage quality and quantity might change because of stressors such as drought, wildfire, and invasive species and how they might need to alter habitat-treatment strategies as a result. More baseline data are needed before effective projections of ungulate migration, at a West-wide scale under climate change, can be made. These data needs include (1) more clearly defined corridors and seasonal range habitats; (2) a comprehensive understanding of the ecological drivers of migration across ungulate species and populations; and (3) the identification of environmental thresholds for key variables that influence migration, above which ungulates alter migratory behavior. The CASCs have several opportunities to play a role in addressing these needs. The CASCs could initiate projects to identify past and potential future changes and trends in key variables known to affect ungulate migration, such as plant phenology, forage quality, or winter severity. However, it would be difficult to use this information to determine what those trends mean for ungulate migration due to the lack of knowledge about environmental thresholds for ungulates. Additional projects would be required to compare multiple years of movement data with key variables to define thresholds. Once available, information on environmental thresholds could be integrated with projections of key variables to forecast the likelihood that the migration routes or the distance traveled could change—another area in which the CASCs could contribute. A more immediate role for the CASCs would be to carry out synthesis projects. One such project could summarize the “state of the science” on the drivers of ungulate migration. Although there are dozens of population- and location-specific studies on this topic, collating this information could help highlight trends in migration drivers that span species and geographies: a necessary first step toward determining the extent to which migration drivers could be affected by climate change. A second project could focus on what is known about how climate variability and change affect ungulate life-histories, population dynamics, and migration in the Western United States. The goal of this effort could be to identify knowledge clusters and information gaps that require further investigation. Together, these synthesized products could focus future scientific activities on the most pressing issues of ungulate migration and climate change in the Western United States.

Arizona, California, Colorado, Idaho, Montana, New