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On the origin and current distribution of the Oceania Snake-Eyed Skink (Cryptoblepharus poecilopleurus) in the Hawaiian archipelago

Because of its extreme isolation and lack of historical connection to a mainland, the Hawaiian Archipelago is thought to have no native nonvolant terrestrial reptiles. Several squamate species have been introduced to the archipelago, likely starting with early Polynesian contact, and increasing as human traffic in the Pacific has amplified. Of the earlier introductions, one species of skink, Cryptoblepharus poecilopleurus , belongs to a genus known for its ability to naturally disperse long distances, even across oceans. The earliest herpetofaunal surveys from Hawai‘i describe the skink as widespread and abundant across the archipelago. A recent phylogenetic analysis reveals substantial haplotype divergence between Hawaiian individuals and other known populations in the Pacific, raising the possibility that this species was an early and natural arrival to the archipelago before human contact. Recent surveys suggest that the species has undergone a dramatic reduction in range across the archipelago, possibly due to the invasion of highly competitive species. Given this information, we aim to further assess the origin of C. poecilopleurus in Hawai‘i, determine its current range, and suggest specific needs for future work. Here, we review the earliest European voyages in the Pacific that are known to have sampled C. poecilopleurus , review literature and museum specimens to develop an understanding of this species’ history in the islands, survey the island of O‘ahu to characterize its current range, and provide preliminary genetic analyses to show the relationship of the Hawai’i populations to the rest of the Pacific.

Hawaii

The SAFRR tsunami scenario-physical damage in California: Chapter E in The SAFRR (Science Application for Risk Reduction) Tsunami Scenario

his chapter attempts to depict a single realistic outcome of the SAFRR (Science Application for Risk Reduction) tsunami scenario in terms of physical damage to and recovery of various aspects of the built environment in California. As described elsewhere in this report, the tsunami is generated by a hypothetical magnitude 9.1 earthquake seaward of the Alaska Peninsula on the Semidi Sector of the Alaska–Aleutian Subduction Zone, 495 miles southwest of Anchorage, at 11:50 a.m. Pacific Daylight Time (PDT) on Thursday March 27, 2014, and arriving at the California coast between 4:00 and 5:40 p.m. (depending on location) the same day. Although other tsunamis could have locally greater impact, this source represents a substantial threat to the state as a whole. One purpose of this chapter is to help operators and users of coastal assets throughout California to develop emergency plans to respond to a real tsunami. Another is to identify ways that operators or owners of these assets can think through options for reducing damage before a future tsunami. A third is to inform the economic analyses for the SAFRR tsunami scenario. And a fourth is to identify research needs to better understand the possible consequences of a tsunami on these assets. The asset classes considered here include the following: Piers, cargo, buildings, and other assets at the Ports of Los Angeles and Long Beach Large vessels in the Ports of Los Angeles and Long Beach Marinas and small craft Coastal buildings Roads and roadway bridges Rail, railway bridges, and rolling stock Agriculture Fire following tsunami Each asset class is examined in a subsection of this chapter. In each subsection, we generally attempt to offer a historical review of damage. We characterize and quantify the assets exposed to loss and describe the modes of damage that have been observed in past tsunamis or are otherwise deemed likely to occur in the SAFRR tsunami scenario. Where practical, we offer a mathematical model of the damageability of assets exposed to loss. Then, applying the damageability model and the velocity, wave amplitude, and inundation models discussed in other SAFRR chapters we offer a single realistic depiction of damage. Other outcomes are of course possible for this hypothetical event. Where practical we estimate repair costs and estimate the duration required to restore the assets to their pre-tsunami condition. We identify opportunities to enhance the resiliency of the assets, either through making them less vulnerable to damage or able to recover more quickly in spite of the damage. Finally, we identify uncertainties in the modeling where research would improve our understanding of the underlying mechanisms of damage and loss or otherwise improve our ability to estimate the future impacts of tsunamis and inform risk-management decisions for tsunamis. However, it is certain that the kinds of damages discussed here have occurred in past tsunamis, even in developed nations, and in a sufficiently large event, will occur in California. Our uncertainties can operate in either direction, either leading to an overestimate of damage or an underestimate. Therefore, losses in an actual future tsunami could be greater than depicted here. Furthermore this evaluation is not intended to be an exhaustive depiction of what could happen in this or similar tsunamis. Other impacts could occur that are not presented here.

California

Status review of the Marbled Murrelet (Brachyramphus marmoratus) in Alaska and British Columbia

The Marbled Murrelet ( Brachyramphus marmoratus ) is a small, diving seabird inhabiting inshore waters of the Northeastern Pacific Ocean. This species feeds on small, schooling fishes and zooplankton, and nests primarily on the moss-covered branches of large, old-growth conifers, and also, in some parts of its range, on the ground. We reviewed existing information on this species to evaluate its current status in the northern part of its range—Alaska (U.S.) and British Columbia (Canada). Within the southern part of its range (Washington, Oregon, and California, U.S.), the Marbled Murrelet was listed as a threatened species under the Endangered Species Act (ESA) in 1993, and the U.S. Fish and Wildlife Service (USFWS) needed information on the species throughout its range for ESA deliberations. We compiled published information on the conservation status, population biology, foraging ecology, population genetics, population status and trends, demography, marine and nesting habitat characteristics, threats, and ongoing conservation efforts for Marbled Murrelets in Alaska and British Columbia. We conducted a new genetic study using samples from a segment of the range that had not been included in previous studies (Washington, Oregon) and additional nuclear intron and microsatellite markers. We also analyzed available at-sea survey data from several locations for trend. To understand the reasonableness of the empirical trend data, we developed demographic models incorporating stochasticity to discern what population trends were possible by chance. The genetic studies substantially confirmed previous findings on population structure in the Marbled Murrelet. Our present work finds three populations: (1) one comprising birds in the central and western Aleutian Islands; (2) one comprising birds in central California; and (3) one comprising birds within the center of the range from the eastern Aleutians to northern California. Our knowledge of genetic structure within this central population is limited and it requires additional study. Compiling available abundance information, we estimated that in the recent past, Marbled Murrelets in Alaska numbered on the order of 1 million birds. We were unable to generate a similar estimate for historical population size in British Columbia. Using trend information from at-sea surveys spanning a wide geographic range in Alaska, murrelet numbers declined significantly at five of eight trend sites at annual rates of -5.4 to -12.7 percent since the early 1990s. Applying these rates of decline to the historical population estimate, the current murrelet population in Alaska is projected to be on the order of 270,000 birds. This represents an overall population decline of about 70 percent during the past 25 years. In British Columbia, available trend data indicate that murrelet populations there have experienced similar declines. We updated a recent (2002) population estimate for British Columbia, concluding that there are now between 54,000 and 92,000 murrelets in British Columbia. The rates of decline we observed are within, but at the high end of, a range of rates expected by chance. Given that declines were estimated for sites over essentially the entire northern range of the species, there is cause for concern about the species’ status. In their marine habitats, Marbled Murrelets overlap with salmon (Oncorhynchus sp.) gillnetting operations in British Columbia and in Alaska (especially in Prince William Sound and Southeast Alaska), and annual bycatch mortality is likely in the low thousands per year, although bycatch rates are difficult to measure. The species’ inshore distribution coincides with high levels of vessel traffic and makes them especially vulnerable to both chronic oil pollution and to catastrophic spills (e.g., the 1989 Exxon Valdez oil spill [EVOS] in south-central Alaska, which is estimated to have killed 12,000 to 15,000 murrelets). In their forested nesting habitats, Marbled Murrelets have lost about 15 percent of their suitable nesting habitat in Southeast Alaska, and 33 to 49 percent in British Columbia, from industrial-scale logging within the past half century. Increased predation also may be a threat to murrelet populations, related to fragmentation and edge effects from logging and development, and recent population increases observed for some important murrelet predators, including Bald Eagles ( Haliaeetus leucocephalus ), Common Ravens ( Corvus corax ), and Steller’s Jays ( Cyanocitta stelleri ). Nesting habitat losses cannot explain the declines observed in areas where industrial logging has not occurred on a large scale (e.g., Prince William Sound) or at all (Glacier Bay). The apparent change in population size and rates of decline reported for the Marbled Murrelet are large, and we therefore considered alternative explanations and precedents for changes of similar magnitude in other marine wildlife populations in the Northeastern Pacific Ocean. The declines are likely real, and related to combined and cumulative effects from climate-related changes in the marine ecosystem (most likely the 1977 regime shift) and human activities (logging, gillnet bycatch, oil pollution). Much uncertainty about the decline could be alleviated by continuing to repeat boat surveys in Prince William Sound and lower Cook Inlet, and by repeating the boat survey of Southeast Alaska that was conducted in 1994. This survey used a statistically sound design and covered the region that has been and likely remains the center of the species’ abundance. Important questions remain to be addressed about methods for measuring population status and change, adult mortality (major sources, density dependence, seasonal concordance), and the movements of wintering populations.

Alaska, British Columbia

Assessment and management of dead-wood habitat

The Bureau of Land Management (BLM) is in the process of revising its resource management plans for six districts in western and southern Oregon as the result of the settlement of a lawsuit brought by the American Forest Resource Council. A range of management alternatives is being considered and evaluated including at least one that will minimize reserves on O&C lands. In order to develop the bases for evaluating management alternatives, the agency needs to derive a reasonable range of objectives for key issues and resources. Dead-wood habitat for wildlife has been identified as a key resource for which decision-making tools and techniques need to be refined and clarified. Under the Northwest Forest Plan, reserves were to play an important role in providing habitat for species associated with dead wood (U.S. Department of Agriculture Forest Service and U.S. Department of the Interior Bureau of Land Management, 1994). Thus, the BLM needs to: 1) address the question of how dead wood will be provided if reserves are not included as a management strategy in the revised Resource Management Plan, and 2) be able to evaluate the effects of alternative land management approaches. Dead wood has become an increasingly important conservation issue in managed forests, as awareness of its function in providing wildlife habitat and in basic ecological processes has dramatically increased over the last several decades (Laudenslayer et al., 2002). A major concern of forest managers is providing dead wood habitat for terrestrial wildlife. Wildlife in Pacific Northwest forests have evolved with disturbances that create large amounts of dead wood; so, it is not surprising that many species are closely associated with standing (snags) or down, dead wood. In general, the occurrence or abundance of one-quarter to one-third of forest-dwelling vertebrate wildlife species, is strongly associated with availability of suitable dead-wood habitat (Bunnell et al., 1999; Rose et al., 2001). In Oregon and Washington, approximately 150 species of wildlife are reported to use dead wood in forests (O’Neil et al., 2001). Forty-seven sensitive and special-status species are associated with dead wood (Appendix A). These are key species for management consideration because concern over small or declining populations is often related to loss of suitable dead-wood habitat (Marshall et al., 1996). Primary excavators (woodpeckers) also are often the focus of dead-wood management, because they perform keystone functions in forest ecosystems by creating cavities for secondary cavity-nesters (Martin and Eadie, 1999; Aubry and Raley, 2002). A diverse guild of secondary cavity-users (including swallows, bluebirds, several species of ducks and owls, ash-throated flycatcher, flying squirrel, bats, and many other species) is unable to excavate dead wood, and therefore relies on cavities created by woodpeckers for nesting sites. Suitable nest cavities are essential for reproduction, and their availability limits population size (Newton, 1994). Thus, populations of secondary cavity-nesters are tightly linked to the habitat requirements of primary excavators. Although managers often focus on decaying wood as habitat for wildlife, the integral role dead wood plays in ecological processes is an equally important consideration for management. Rose et al. (2001) provide a thorough review of the ecological functions of dead wood in Pacific Northwest forests, briefly summarized here. Decaying wood functions in: soil development and productivity, nutrient cycling, nitrogen fixation, and carbon storage. From ridge tops, to headwater streams, to estuaries and coastal marine ecosystems, decaying wood is fundamental to diverse terrestrial and aquatic food webs. Wildlife species that use dead wood for cover or feeding are linked to these ecosystem processes through a broad array of functional roles, including facilitation of decay and trophic interactions with other organisms (Marcot, 2002; Marcot, 2003). For example, by puncturing bark and fragmenting sapwood, woodpeckers create sites favorable for wood-decaying organisms (Farris et al., 2004), which in turn create habitat for other species and facilitate nutrient cycling. Small mammals that use down wood for cover function in the dispersal of plant seeds and fungal spores (Carey et al., 1999). Resident cavitynesting birds may regulate insect populations by preying on overwintering arthropods (Jackson, 1979; Kroll and Fleet, 1979). These examples illustrate how dead wood not only directly provides habitat for a large number of wildlife species, but also forms the foundation of functional webs that critically influence forest ecosystems (Marcot, 2002; Marcot, 2003). The important and far-reaching implications of management of decaying wood highlight the need for conservation of dead-wood resources in managed forests. Consideration of the key ecological functions of species associated with dead wood can help guide management of dead wood in a framework consistent with the paradigm of ecosystem management (Marcot and Vander Heyden, 2001; Marcot, 2002.) As more information is revealed about the ecological and habitat values of decaying wood, concern has increased over a reduction in the current amounts of dead wood relative to historic levels (Ohmann and Waddell, 2002). Past management practices have tended to severely reduce amounts of dead wood throughout all stages of forest development (Hansen et al., 1991). The large amounts of legacy wood that characterize young post-disturbance forests are not realized in managed stands, because most of the wood volume is removed at harvest for economic and safety reasons. Mid-rotation thinning is used to “salvage” some mortality that might otherwise occur due to suppression, so fewer snags are recruited in mid-seral stages. Harvest rotations of 80 years or less truncate tree size in managed stands, and thus limit the production of large-diameter wood. As a consequence of these practices, dead wood has been reduced by as much as 90% after two rotations of managed Douglas-fir (Rose et al., 2001). Large legacy deadwood is becoming a scarce, critical habitat that will take decades to centuries to replace. Furthermore, management continues to have important direct and indirect effects on the amount and distribution of dead wood in forests. Current guidelines for managing dead wood may be inadequate to maintain habitat for all associated species because they largely focus on a single use of dead wood (nesting habitat) by a small suite of species (cavity-nesting birds), and may under represent the sizes and amounts of dead wood used by many wildlife species (Rose et al., 2001, Wilhere, 2003).

Open-File Report

Surveys for presence of Oregon spotted frog (Rana pretiosa): background information and field methods

The Oregon spotted frog (Rana pretiosa) is the most aquatic of the native frogs in the Pacific Northwest. The common name derives from the pattern of black, ragged-edged spots set against a brown or red ground color on the dorsum of adult frogs. Oregon spotted frogs are generally associated with wetland complexes that have several aquatic habitat types and sizeable coverage of emergent vegetation. Like other ranid frogs native to the Northwest, Oregon spotted frogs breed in spring, larvae transform in summer of their breeding year, and adults tend to be relatively short lived (3-5 yrs). Each life stage (egg, tadpole, juvenile and adult) has characteristics that present challenges for detection. Breeding can be explosive and completed within 1-2 weeks. Egg masses are laid in aggregations, often in a few locations in large areas of potential habitat. Egg masses can develop, hatch, and disintegrate in <2 weeks during warm weather. Tadpoles can be difficult to identify, have low survival, and spend most of their 3-4 months hidden in vegetation or flocculant substrates. Juveniles and adults are often difficult to capture and can spend summers away from breeding areas. Moreover, a substantial portion of extant populations are of limited size (<100 breeding adults), and field densities of all life stages are often low. An understanding of the biology of the species and use of multiple visits are thus important for assessing presence of Oregon spotted frogs. This report is meant to be a resource for USDA Region 6 Forest Service (FS) and OR/WA Bureau of Land Management (BLM) personnel tasked with surveying for the presence of Oregon spotted frogs. Our objective was to summarize information to improve the efficiency of field surveys and increase chances of detection if frogs are present. We include overviews of historical and extant ranges of Oregon spotted frog. We briefly summarize what is known of Oregon spotted frog habitat associations and review aspects of behavior and ecology that are likely to affect detectability in the field. We summarize characteristics that can help differentiate Oregon spotted frog life stages from other northwestern ranid frogs encountered during surveys. Appendices include examples of data collection formats and a protocol for disinfecting field gear.

Interagency Special Status / Sensitive Species Pro

Development of new information to inform fish passage decisions at the Yale and Merwin hydro projects on the Lewis River, Washington—Final report, 2018

The reintroduction of extirpated salmonids to historically occupied areas is becoming increasingly common as a conservation and recovery strategy. Often, reintroductions are implemented after the factors that originally led to species extirpation have been reduced, eliminated, or mitigated. For anadromous Oncorhynchus spp. (Pacific salmon) and O. mykiss (steelhead), addressing barriers to migration, which have been a primary factor in the decline and extirpation of many populations, has been an integral component of recovery efforts. Mitigation has included barrier removal, developing fish passage opportunities, and (or) actively trapping and hauling juvenile and adult anadromous salmonids around barriers. With any reintroduction, there are a number of concerns regarding the ecological impact of the reintroduction efforts. Three of the main tenets to consider when assessing reintroductions are (1) the potential benefits if reintroduction is successful, (2) the biological risk through interactions of reintroduced strains with existing populations, and (3) the factors potentially limiting a successful reintroduction. This report focuses on information and data to address the second and third factors as they apply to the upper Lewis River in Washington. The upper Lewis River historically contained wild populations of O. tshawytscha (Chinook salmon), O. kisutch (coho salmon), and steelhead. These populations were extirpated after completion of hydropower facilities on Lake Merwin in 1932, Yale Lake in 1953, and Swift Reservoir in 1958, which prevented fish from migrating to and from ocean environments. However, recent licenses issued by the Federal Energy Regulatory Commission require the installation and operation of an upstream fish passage facility at Lake Merwin and a downstream fish passage facility at Swift Reservoir. The licenses were developed in consultation with the National Marine Fisheries Service and the U.S. Fish and Wildlife Service. The overarching goal of this fish reintroduction project is to establish viable, self-sustaining, naturally reproducing, harvestable populations of spring Chinook salmon, winter steelhead, and coho salmon at levels higher than minimum viable populations. This report uses a combination of field data and existing information to address six key objectives related to the reintroduction in order to inform decisions about passage at the Yale Lake and Lake Merwin hydropower projects. The objectives are (1) a review of information relevant to anadromous fish reintroduction and full fish passage; (2) a habitat assessment of tributaries to Swift Reservoir, Yale Lake, and Lake Merwin; (3) a field study to assess adult potential for spawning success; (4) an assessment of juvenile production and outmigration success; (5) a Lake Merwin predator impact study; and (6) a set of studies assessing interactions between anadromous and resident fish.

Washington

Late Jurassic-Early Cretaceous orogenic gold mineralization in the Klamath Mountains, California: Constraints from 40Ar/39Ar dating of hydrothermal muscovite

The Klamath Mountains gold province is the second most important historical producer in California, having produced more than 7 Moz of gold from both lode and placer sources. Hydrothermal muscovite grains from gold-bearing veins provide the first 40 Ar/ 39 Ar age constraints indicative of a protracted period of mineralization in the Klamath Mountains. The data indicate that the window for orogenic gold mineralization in the Klamath Mountains was from ∼160–140 Ma, coinciding in age with the oldest orogenic gold deposits in the Sierra Nevada foothills province to the south, although mineralization continued in the latter along the Mother Lode belt for another 20–30 million years. Despite the broad age overlap between hydrothermal activity and magmatism, the former relates to a regional thermal event, and there is no genetic link between the two. Instead, a correlation exists between the timing of lode gold formation and discrete tectonic events, changes in stress regime, and fault movement. The maximum age corresponds to a major plate reorganization in the Pacific basin and initial gold mineralization continuing into the Sierra Nevada foothills gold province to the south. The minimum age corresponds to the westerly lateral offset of the Klamath Mountains from the Sierra Nevada and the then-active arc, marking the termination of both magmatism and gold-producing hydrothermal activity in the Klamath Mountains. Lode gold mineralization in the Klamath Mountains is compatible with a crustal source of metals and fluids that were released during metamorphic devolatilization and focused via hydrothermal fluid flow along regional faults.

California

Crustal structure of the coastal and marine San Francisco Bay region, California

As of the time of this writing, the San Francisco Bay region is home to about 6.8 million people, ranking fifth among population centers in the United States. Most of these people live on the coastal lands along San Francisco Bay, the Sacramento River delta, and the Pacific coast. The region straddles the tectonic boundary between the Pacific and North American Plates and is crossed by several strands of the San Andreas Fault system. These faults, which are stressed by about 4 cm of relative plate motion each year, pose an obvious seismic hazard. We have many ways to study earthquake faults. Where faults break the land surface, we may learn valuable information needed for hazard assessment, such as cumulative offset, slip rate, and earthquake history. However, many of the major faults in the region are partly submerged beneath San Francisco and Monterey Bays. Although this situation poses problems in gathering observational data for hazard assessment, bay-region waterways provide an opportunity to study faultzone structure by using marine subsurface-imaging techniques, which are easier and cheaper than equivalent studies on land. In 1993, the U.S. Geological Survey (USGS) launched a 5-year project aimed at unearthing the basic science of the submerged San Andreas strike-slip fault system in the San Francisco Bay region with its many interacting strands. Primary project goals were structural, such as to discover how the San Andreas and Hayward Faults are connected or related at depth, to learn how the complex of faults in the San Andreas stepover zone on the Golden Gate platform functions, and to locate previously unknown faults. This volume thus contains mostly structural information about the San Francisco Bay region, much of it gathered through exploratory geophysical experiments. The volume is organized “top down,” from studies in the shallowest crust to the base of the crust. The first three chapters are linked through their use of novel geophysical techniques to study earthquake effects, coseismic slip, and shallow stratigraphy. Kayen and others examine crustal structure at very high resolution and demonstrate the use of ground-penetrating-radar tomography to measure the liquefaction potential of coastal sedimentary deposits. McGann and others use microfossils from drill cores along the San Francisco-Oakland Bay Bridge to determine a more detailed late Pleistocene stratigraphy of San Francisco Bay than was previously available. Geist and Zoback use the historical record of a small local tsunami generated by the great 1906 San Francisco earthquake to model the rupture process of that earthquake. The last four chapters are dedicated to studies of fault related structure of the seismogenic crust in and around the San Andreas Fault system in the San Francisco Bay region. Jachens and others compile an aeromagnetic anomaly map from new high-resolution flights across the bay region. Some of these anomalies mark the positions of offshore faults, and others are offset by faults, providing constraints on cumulative slip. Hart and others concisely summarize the marine seismic data recorded in and around San Francisco Bay, map the coverage, and provide archival information for those interested in acquiring data. The last two chapters present the results of the seismic data that have been analyzed. Bruns and others present their analysis of high-quality intermediate-resolution (~5-km penetration) seismic-reflection data gathered over the complex San Andreas-San Gregorio Fault junction. This junction, which is thought to be where the 1906 San Francisco earthquake originated (see Geist and Zoback, this volume), contains an apparent extensional right stepover in the San Andreas Fault. Finally, Parsons and others review and summarize the results of deep-crustal seismic-reflection experiments and local-earthquake tomographic studies, including previously unpublished data, and provide additional support and discussion for already-published studies. In summary, these studies were carried out in an environment where background information on faults in the San Francisco Bay region was sought. Much of the structural information presented here comes from experiments of a style unlikely to be conducted by the USGS in the near future. Together, the chapters in this volume provide a structural framework for a major part of a complex strike-slip fault system.

California

Preliminary assessment of channel stability and bed-material transport in the Tillamook Bay tributaries and Nehalem River basin, northwestern Oregon

This report summarizes a preliminary study of bed-material transport, vertical and lateral channel changes, and existing datasets for the Tillamook (drainage area 156 square kilometers [km 2 ]), Trask (451 km 2 ), Wilson (500 km 2 ), Kilchis (169 km 2 ), Miami (94 km 2 ), and Nehalem (2,207 km 2 ) Rivers along the northwestern Oregon coast. This study, conducted in coopera-tion with the U.S. Army Corps of Engineers and Oregon Department of State Lands to inform permitting decisions regarding instream gravel mining, revealed that: Study areas along the six rivers can be divided into reaches based on tidal influence and topography. The fluvial (nontidal or dominated by riverine processes) reaches vary in length (2.4-9.3 kilometer [km]), gradient (0.0011-0.0075 meter of elevation change per meter of channel length [m/m]), and bed-material composition (a mixture of alluvium and intermittent bedrock outcrops to predominately alluvium). In fluvial reaches, unit bar area (square meter of bar area per meter of channel length [m 2 /m]) as mapped from 2009 photographs ranged from 7.1 m 2 /m on the Tillamook River to 27.9 m 2 /m on the Miami River. In tidal reaches, all six rivers flow over alluvial deposits, but have varying gradients (0.0001-0.0013 m/m) and lengths affected by tide (1.3-24.6 km). The Miami River has the steepest and shortest tidal reach and the Nehalem River has the flattest and longest tidal reach. Bars in the tidal reaches are generally composed of sand and mud. Unit bar area was greatest in the Tidal Nehalem Reach, where extensive mud flats flank the lower channel. Background factors such as valley and channel confinement, basin geology, channel slope, and tidal extent control the spatial variation in the accumulation and texture of bed material. Presently, the Upper Fluvial Wilson and Miami Reaches and Fluvial Nehalem Reach have the greatest abundance of gravel bars, likely owing to local bed-material sources in combination with decreasing channel gradient and valley confinement. Natural and human-caused disturbances such as mass movements, logging, fire, channel modifications for navigation and flood control, and gravel mining also have varying effects on channel condition, bed-material transport, and distribution and area of bars throughout the study areas and over time. Existing datasets include at least 16 and 18 sets of aerial and orthophotographs that were taken of the study areas in the Tillamook Bay tributary basins and Nehalem River basin, respectively, from 1939 to 2011. These photographs are available for future assessments of long-term changes in channel condition, bar area, and vegetation establishment patterns. High resolution Light Detection And Ranging (LiDAR) surveys acquired in 2007-2009 could support future quantitative analyses of channel morphology and bed-material transport in all study areas. A review of deposited and mined gravel volumes reported for instream gravel mining sites shows that bed-material deposition tends to rebuild mined bar surfaces in most years. Mean annual deposition volumes on individual bars exceeded 3,000 cubic meters (m 3 ) on Donaldson Bar on the Wilson River, Dill Bar on the Kilchis River, and Plant and Winslow Bars on the Nehalem River. Cumulative reported volumes of bed-material deposition were greatest at Donaldson and Dill Bars, totaling over 25,000 m 3 per site from 2004 to 2011. Within this period, reported cumulative mined volumes were greatest for the Donaldson, Plant, and Winslow Bars, ranging from 24,470 to 33,940 m 3 . Analysis of historical stage-streamflow data collected by the U.S. Geological Survey on the Wilson River near Tillamook (14301500) and Nehalem River near Foss (14301000) shows that these rivers have episodically aggraded and incised, mostly following high flow events, but they do not exhibit systematic, long-term trends in bed elevation. Multiple cross sections show that channels near bridge crossings in all six study areas are dynamic with many subject to incision and aggradation as well as lateral shifts in thalweg position and bank deposition and erosion. In fluvial reaches, unit bar area declined a net 5.3-83.6 percent from 1939 to 2009. The documented reduction in bar area may be attributable to several factors, including vegetation establishment and stabilization of formerly active bar surfaces, lateral channel changes and resulting alterations in sediment deposition and erosion patterns, and streamflow and/or tide differences between photographs. Other factors that may be associated with the observed reduction in bar area but not assessed in this reconnaissance level study include changes in the sediment and hydrology regimes of these rivers over the analysis period. In tidal reaches, unit bar area increased on the Tillamook and Nehalem Rivers (98.0 and 14.7 percent, respectively), but declined a net 24.2 to 83.1 percent in the other four tidal reaches. Net increases in bar area in the Tidal Tillamook and Nehalem Reaches were possibly attributable to tidal differences between the photographs as well as sediment deposition behind log booms and pile structures on the Tillamook River between 1939 and 1967. The armoring ratio (ratio of the median grain sizes of a bar's surface and subsurface layers) was 1.6 at Lower Waldron Bar on the Miami River, tentatively indicating a relative balance between transport capacity and sediment supply at this location. Armoring ratios, however, ranged from 2.4 to 5.5 at sites on the Trask, Wilson, Kilchis, and Nehalem Rivers; these coarse armor layers probably reflect limited bed-material supply at these sites. On the basis of mapping results, measured armoring ratios, and channel cross section surveys, preliminary conclusions are that the fluvial reaches on the Tillamook, Trask, Kilchis, and Nehalem Rivers are currently sediment supply-limited in terms of bed material - that is, the transport capacity of the channel generally exceeds the supply of bed material. The relation between transport capacity and sediment is more ambiguous for the fluvial reaches on the Wilson and Miami Rivers, but transport-limited conditions are likely for at least parts of these reaches. Some of these reaches have possibly evolved from sediment supply-limited to transport-limited over the last several decades in response to changing basin and climate conditions. Because of exceedingly low gradients, all the tidal reaches are transport-limited. Bed material in these reaches, however, is primarily sand and finer grain-size material and probably transported as suspended load from upstream reaches. These reaches will be most susceptible to watershed conditions affecting the supply and transport of fine sediment. Compared to basins on the southwestern Oregon coast, such as the Chetco and Rogue River basins, these six basins likely transport overall less gravel bed material. Although tentative in the absence of actual transport measurements, this conclusion is supported by the much lower area and frequency of bars and longer tidal reaches along all the northcoast rivers examined in this study. Previous studies suggest that the expansive and largely unvegetated bars visible in the 1939 photographs are primarily associated with voluminous sedimentation starting soon after the first Tillamook Burn fire in 1933. However, USGS studies of temporal bar trends in other Oregon coastal rivers unaffected by the Tillamook Burn show similar declines in bar area over approximately the same analysis period. In the Umpqua and Chetco River basins, historical declines in bar area are associated with long-term decreases in flood magnitude. Other factors may include changes in the type and volume of large wood and riparian vegetation. Further characterization of hydrology patterns in these basins and possible linkages with climate factors related to flood peaks, such as the Pacific Decadal Oscillation, could support inferences of expected future changes in vegetation establishment and channel planform and profile. More detailed investigations of bed-material transport rates and channel morphology would support assessments of lateral and vertical channel condition and longitudinal trends in bed material. Such assessments would be most practical for the fluvial study areas on the Wilson, Kilchis, Miami, and Nehalem Rivers and relevant to several ongoing management and ecological issues pertaining to sand and gravel transport. Tidal reaches may also be logical subjects for indepth analysis where studies would be more relevant to the deposition and transport of fine sediment (and associated channel and riparian conditions and processes) rather than coarse bed material.

Oregon