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USGS2018

A spatio-contextual probabilistic model for extracting linear features in hilly terrain from high-resolution DEM data

This paper introduces our research in developing a probabilistic model to extract linear terrain features from high resolution DEM (Digital Elevation Model) data. The proposed model takes full advantage of spatio-contextual information to characterize terrain changes. It first derives a quantifiable measure of spatio-contextual patterns of linear terrain feature, such as ridgelines, valley lines and crater boundaries, and then adopts multiple neighborhood analysis and a probability model to address data uncertainty in terrain surface modeling. Different from traditional approaches, the proposed model has the ability to achieve near-automated processing, and to support effective extraction of terrain features in both smooth and rough surfaces. Through a series of experiments, we demonstrate that the proposed approach outperforms existing techniques, including: thresholding, stream/drainage network analysis, visual descriptor, object-based image analysis and edge detection. We hope this work contributes to both the geospatial data science and geomorphology communities with a new way of utilizing high-resolution imagery in terrain analysis.

International Journal of Geographical Information ↗

USGS2017

Semi-arid grassland bird responses to patch-burn grazing and drought

As grassland birds of central North America experience steep population declines with changes in land use, management of remaining tracts becomes increasingly important for population viability. The integrated use of fire and grazing may enhance vegetation heterogeneity and diversity in breeding birds, but the subsequent effects on reproduction are unknown. We examined the influence of patch-burn grazing management in shortgrass steppe in eastern Colorado on habitat use and reproductive success of 3 grassland bird species, horned lark (Eremophila alpestris), lark bunting (Calamospiza melanocorys), and McCown’s longspur (Rhynchophanes mccownii), at several spatial scales during 2011 and 2012. Although no simple direct relationship to patch-burn grazing treatment existed, habitat selection depended on precipitation- and management-induced vegetation conditions and spatial scale. All species selected taller-than-expected vegetation at the nest site, whereas at the territory scale, horned larks and McCown’s longspurs selected areas with low vegetation height and sparse cover of tall plants (taller than the dominant shortgrasses). Buntings nested primarily in unburned grassland under average rainfall. Larks and longspurs shifted activity from patch burns during average precipitation (2011) to unburned pastures during drought (2012). Daily survival rate (DSR) of nests varied with time in season, species, weather, and vegetation structure. Daily survival rate of McCown’s longspur nests did not vary with foliar cover of relatively tall vegetation at the nest under average precipitation but declined with increasing cover during drought. At the 200-m scale, increasing cover of shortgrasses, rather than taller plant species, improved DSR of larks and longspurs. These birds experience tradeoffs in the selection of habitat at different spatial scales: tall structure at nests may reduce visual detection by predators and provide protection from sun, wind, and rain, yet taller structure surrounding territories may host nest predators. Patch-burn grazing management in combination with other strategies that retain taller-structured vegetation may help sustain a diversity of breeding habitats for shortgrass birds under varying weather conditions.

Journal of Wildlife Management↗

USGS1996

Can shrub cover increase predation risk for a desert rodent?

Previous research indicates that predation risk may influence activity patterns, habitat partitioning, and community structure of nocturnal desert rodents. Shrub microhabitat is typically considered safer than open microhabitat for these small mammals. We investigated predation risk for Townsend's ground squirrels (Spermophilus townsendii), which are diurnal desert rodents that detect predators visually and use burrows for refuge. Our results suggested that shrub cover may increase risk for these squirrels by decreasing their ability to escape from predators. Our field experiment indicated that running speeds of juvenile squirrels were lower in shrub (Ceratoides lanata) habitat than in open areas. Shrub cover was also associated with shorter predator-detection distances (mammalian and avian) and fewer refuges (burrow entrances per hectare) than in open areas in one year but not in another. Our study demonstrated that the visual and locomotive obstruction of vegetative cover may increase predation risk for diurnal desert rodents and that elements of habitat-dependent risk may be temporally dynamic.

Canadian Journal of Zoology↗

USGS2011

Canine detection of free-ranging brown treesnakes on Guam

We investigated canine teams (dogs and their handlers) on Guam as a potential tool for finding invasive brown treesnakes (Boiga irregularis) in the wild. Canine teams searched a 40 × 40 m forested area for a snake that had consumed a dead mouse containing a radio-transmitter. To avoid tainting the target or target area with human scent, no snake was handled or closely approached prior to searches. Trials were conducted during the morning when these nocturnal snakes were usually hidden in refugia. A radiotracker knew the snake's location, but dog handlers and search navigators did not. Of 85 trials conducted over four months, the two canine teams had an average success rate of 35% of correctly defining an area ≤ 5 × 5 m that contained the transmittered snake; the team with more experience prior to the trials had a success rate of 44% compared with 26% for the less experienced team. Canine teams also found 11 shed skins from wild snakes. Although dogs alerted outside the vicinity of transmittered snakes, only one wild, non-transmittered snake was found during the trials, possibly reflecting the difficulty humans have in locating non-transmittered brown treesnakes in refugia. We evaluated success at finding snakes as a function of canine team, number of prior trials (i.e. experience gained during the trials), recent canine success at finding a target snake, various environmental conditions, snake perch height, and snake characteristics (snout-vent length and sex). Success rate increased over the course of the trials. Canine team success also increased with increasing average humidity and decreased with increasing average wind speed. Our results suggest dogs could be useful at detecting brown treesnakes in refugia, particularly when compared to daytime visual searches by humans, but techniques are needed to help humans find and extract snakes once a dog has alerted.

New Zealand Journal of Ecology↗

USGS2023

Detection and quantification of preferential flow using artificial rainfall with multiple experimental approaches

Preferential flow in the unsaturated zone strongly influences important hydrologic processes, such as infiltration, contaminant transport, and aquifer recharge. Because it entails various combinations of physical processes arising from the interactions of water, air, and solid particles in a porous medium, preferential flow is highly complex. Major research is needed to improve the ability to understand, quantify, model, and predict preferential flow. Toward a solution, a combination of diverse experimental measurements at multiple scales, from laboratory scale to mesoscale, has been implemented to detect and quantify preferential paths in carbonate and karstic unsaturated zones. This involves integration of information from (1) core samples, by means of mercury intrusion porosimeter, evaporation, quasi-steady centrifuge and dewpoint potentiometer laboratory methods, to investigate the effect of pore-size distribution on hydraulic characteristics and the potential activation of preferential flow, (2) field plot experiments with artificial sprinkling, to visualize preferential pathways related to secondary porosity, through use of geophysical measurements, and (3) mesoscale evaluation of field data through episodic master recession modeling of episodic recharge. This study demonstrates that preferential flow processes operate from core scale to two different field scales and impact on the qualitative and quantitative groundwater status, by entailing fast flow with subsequent effects on recharge rate and contaminant mobilizing. The presented results represent a rare example of preferential flow detection and numerical modeling by reducing underestimation of the recharge and contamination risks.

Bari↗

USGS2005

Resilience of predators to fishing pressure on coral patch reefs

Numbers and biomass of piscivorous fish and their predation on other fish may often be high in undisturbed coral reef communities. The effects of such predation have sometimes been studied by removal of piscivores (either experimentally or by fishermen). Such perturbations have usually involved removal of large, highly vulnerable, mobile piscivores that are often actively sought in fisheries. The effects of fishing on smaller, demersal, semi-resident piscivores have been little studied. We studied such effects on the fish communities of patch reefs at Midway atoll by experimentally removing major resident, demersal, piscivorous fishes. First, four control reefs and four experimental reefs were selected, their dimensions and habitats mapped, and their visible fish communities censused repeatedly over 1 year. Census of all control and experimental reefs was continued for the following 39 months, during which known piscivores were collected repeatedly by hand spearing. Records were kept of catch and effort to calculate CPUE as an index of predator density. Spearfishing on the experimental reefs removed 2504 piscivorous fish from 12 families and 43 taxa (mostly species). The species richness of the catch did not show an overall change over the duration of the experiment. Spearman rank correlation analysis showed some unexpected positive correlations for density in numbers and biomass of major fished piscivorous groups (especially lizardfish) over the experiment. Only two relatively minor fished piscivorous taxa declined in abundance over the experiment, while the overall abundance of piscivores increased. Visual censuses of fish on the experimental reefs also failed to show reduction of total piscivores over the full experimental period. No significant trend in the abundance of lizardfish censused over the full period was apparent on any of the control reefs. The high resilience of piscivores on these experimental reefs to relatively intense fishing pressure could result from their protracted recruitment seasons, high immigration rates, cryptic habits, or naturally high abundances. A major factor was the high immigration rates of lizardfish, replacing lizardfish and other less mobile piscivores removed from the reefs by spearing. On the fished reefs, the removed lizardfish population replaced itself >20 times during the experiment; other piscivorous taxa replaced themselves only 5 times.

Journal of Experimental Marine Biology and Ecology↗

USGS2005

Light-mediated predation by northern squawfish on juvenile Chinook salmon

Northern squawfish Ptychocheilus oregonensis cause significant mortality of juvenile salmon in the lower Columbia River Basin (U.S.A.). The effects of light intensity on this predator-prey interaction were examined with laboratory experiments and modelling studies. In laboratory experiments, the rate of capture of subyearling chinook salmon Oncorhynchus tshawytscha by northern squawfish was inversely related to light intensity. In a large raceway, about five times more salmon were captured during 4 h periods of relative darkness (0–03 Ix) than during periods with high light intensity (160 Ix). The rate of predation could be manipulated by increasing or decreasing light intensity. A simulation model was developed for visual predators that encounter, attack, and capture juvenile salmon, whose schooling behaviour was light-sensitive. The model was fitted to laboratory results using a Monte Carlo filtering procedure. Model-predicted predation rate was especially sensitive to the visual range of predators at low light intensity and to predator search speed at high light. Modelling results also suggested that predation by northern squawfish on juvenile salmon may be highest across a narrow window of fight intensity.

Journal of Fish Biology↗

USGS2009

Web GIS in practice VII: stereoscopic 3-D solutions for online maps and virtual globes

Because our pupils are about 6.5 cm apart, each eye views a scene from a different angle and sends a unique image to the visual cortex, which then merges the images from both eyes into a single picture. The slight difference between the right and left images allows the brain to properly perceive the 'third dimension' or depth in a scene (stereopsis). However, when a person views a conventional 2-D (two-dimensional) image representation of a 3-D (three-dimensional) scene on a conventional computer screen, each eye receives essentially the same information. Depth in such cases can only be approximately inferred from visual clues in the image, such as perspective, as only one image is offered to both eyes. The goal of stereoscopic 3-D displays is to project a slightly different image into each eye to achieve a much truer and realistic perception of depth, of different scene planes, and of object relief. This paper presents a brief review of a number of stereoscopic 3-D hardware and software solutions for creating and displaying online maps and virtual globes (such as Google Earth) in "true 3D", with costs ranging from almost free to multi-thousand pounds sterling. A practical account is also given of the experience of the USGS BRD UMESC (United States Geological Survey's Biological Resources Division, Upper Midwest Environmental Sciences Center) in setting up a low-cost, full-colour stereoscopic 3-D system.

International Journal of Health Geographics↗

USGS2006

Visual implant elastomer and anchor tag retention in largemouth bass

We double-marked largemouth bass Micropterus salmoides with Floy FD-68B anchor tags and visible implant elastomer (VIE) marks before stocking to compare retention of the two marks for age-0 (178 mm total length [TL]) and age-1 (273 mm TL) largemouth bass. In a short-term (31-d) evaluation, retention rate of anchor tags was over 94% for each age-class and retention of VIE marks was 98% in both age-classes. In a longer-term comparison of fish stocked into the Ohio River, retention was substantially higher for VIE marks (92.9%) than for anchor tags (42.9%) after 403 d (ages combined). Although anchor tags had high retention in two sizes of largemouth bass during the short-term experiment, they should not be used in situations where accurate identification of marked fish is required for periods longer than 123 d. ?? Copyright by the American Fisheries Society 2006.

North American Journal of Fisheries Management↗

USGS2002

Solubility relations in the system sodium chloride-ferrous chloride-water between 25 and 70.degree.C at 1 atm

Solubility relations in the ternary system NaCl-FeCl2-H2O have been determined by the visual polythermal method at 1 atm from 20 to 85??C along six composition lines. These she composition lines are defined by mixing FeCl2??4H2O with six aqueous NaCl solutions containing 5, 10, 11, 15, 20, and 25 wt % of NaCl, respectively. The solid phases encountered in these experiments were NaCl and FeCl2??4H2O. The maximum uncertainties in these measurements are ??0.02 wt % NaCl and ??0.15??C. The data along each composition line were regressed to a smooth curve when only one solid phase was stable. When two solids were stable along a composition line, the data were regressed to two smooth curves, the intersection of which indicated the point where the two solids coexisted. The maximum deviation of the measured solubilities from the smoothed curves is 0.14 wt % FeCl2. Isothermal solubilities of halite and FeCl2??4H2O were calculated from these smoothed curves at 25, 50, and 70 ??C.

Journal of Chemical and Engineering Data↗

USGS2011

Method for detecting moment connection fracture using high-frequency transients in recorded accelerations

The 1994 Northridge earthquake caused brittle fractures in steel moment frame building connections, despite causing little visible building damage in most cases. Future strong earthquakes are likely to cause similar damage to the many un-retrofitted pre-Northridge buildings in the western US and elsewhere. Without obvious permanent building deformation, costly intrusive inspections are currently the only way to determine if major fracture damage that compromises building safety has occurred. Building instrumentation has the potential to provide engineers and owners with timely information on fracture occurrence. Structural dynamics theory predicts and scale model experiments have demonstrated that sudden, large changes in structure properties caused by moment connection fractures will cause transient dynamic response. A method is proposed for detecting the building-wide level of connection fracture damage, based on observing high-frequency, fracture-induced transient dynamic responses in strong motion accelerograms. High-frequency transients are short (<1 s), sudden-onset waveforms with frequency content above 25 Hz that are visually apparent in recorded accelerations. Strong motion data and damage information from intrusive inspections collected from 24 sparsely instrumented buildings following the 1994 Northridge earthquake are used to evaluate the proposed method. The method’s overall success rate for this data set is 67%, but this rate varies significantly with damage level. The method performs reasonably well in detecting significant fracture damage and in identifying cases with no damage, but fails in cases with few fractures. Combining the method with other damage indicators and removing records with excessive noise improves the ability to detect the level of damage.

Journal of Constructional Steel Research↗

USGS2001

Nomad Rover field experiment, Atacama Desert, Chile 1. Science results overview

Nomad was deployed for a 45 day traverse in the Atacama Desert, Chile, during the summer of 1997. During this traverse, 1 week was devoted to science experiments. The goal of the science experiments was to test different planetary surface exploration strategies that included (1) a Mars mission simulation, (2) a science on the fly experiment, where the rover was kept moving 75% of the operation time. (The goal of this operation was to determine whether or not successful interpretation of the environment is related to the time spent on a target. The role of mobility in helping the interpretation was also assessed.) (3) a meteorite search using visual and instrumental methods to remotely identify meteorites in extreme environments, and (4) a time-delay experiment with and without using the panospheric camera. The results were as follow: the remote science team positively identified the main characteristics of the test site geological environment. The science on the fly experiment showed that the selection of appropriate targets might be even more critical than the time spent on a study area to reconstruct the history of a site. During the same operation the science team members identified and sampled a rock from a Jurassic outcrop that they proposed to be a fossil. The presence of paleolife indicators in this rock was confirmed later by laboratory analysis. Both visual and instrumental modes demonstrated the feasibility, in at least some conditions, of carrying out a field search for meteorites by using remote-controlled vehicles. Finally, metrics collected from the observation of the science team operations, and the use team members made of mission data, provided critical information on what operation sequences could be automated on board rovers in future planetary surface explorations.

Atacama Desert↗

USGS1978

Hydrochemistry and hydrodynamics of injecting an iron-rich pickling liquor into a dolomitic sandstone: A laboratory study

Waste pickling liquor containing high concentrations of iron salts was injected into cores of quartzite, sandstone, and dolomite in a laboratory study to determine what effect this procedure might have on the permeability of these rock types. Experiments were performed at field conditions 40°C and 13.8 MPa (megapascals) in a high-pressure triaxial chamber similar to that used in rock-mechanics testing but modified to allow downstream sample collection of effluent liquids and direct visual monitoring at in-situ conditions. Five samples were tested, ranging in effective porosity from 2.9 to 13 percent and in lithology from a quartzite to a dolomite. Hydraulic conductivity of the quartzitic samples remained unchanged during injection of over 50 pore volumes of pickling liquor, but significant decreases in the hydraulic conductivity of dolomitic samples were observed. Chemical analyses of effluents from a dolomitic sample suggest that carbonate minerals were dissolving and iron was precipitating. Clogging of pore space by CO 2 entrapment or by CaCl 2 precipitation did not seem to play a role in decreasing hydraulic conductivity because injection into a dolomitic core of more than 140 pore volumes of HCl at a concentration similar to that of the pickling liquor caused only a slight decrease in hydraulic conductivity compared with the decrease observed when an additional 30 pore volumes of pickling liquor were subsequently injected.

Journal of Research of the U.S. Geological Survey↗

USGS2023

The smaller, the better? First evaluation of growth and mortality in crayfish internally tagged with p-Chips

Small-bodied aquatic animals present a challenge to researchers seeking to uniquely mark individuals for scientific study. Microtransponder tags, such as p-Chips, represent the smallest electronic animal tags available to meet this need. The use of p-Chips to tag freshwater crayfishes, however, has not been explored. The goal of this study, therefore, was to determine the effects of p-Chip tagging on growth and survival of crayfishes in a controlled laboratory environment. We also investigated potential influences from variables such as sex, reproductive form, number of molt events, and crayfish size on mortality. We internally tagged individuals of the woodland crayfish Faxonius hylas (Faxon, 1890) (12.2–26.6 mm carapace length; CL) with either one p-Chip (single-tag) or one p-Chip and one visual implant elastomer tag (double-tagged) and observed the effects over a period of 90 days. Survival probability over time was not statistically different ( P > 0.05) among tagging groups, sex, and reproductive form. Survival rates were similar across all tagging groups, with 75% in the control group, 77% in the double-tagged group, and 78% in the single-tag group. A strong correlation, however, was observed between survival and the number of molt events. Additionally, there was a negative correlation between survival and crayfish size (CL), indicating a higher risk of mortality for larger individuals. There were no statistically significant differences in growth in CL ( P = 0.30) or mass ( P = 0.19) among the tagging groups. We conclude that p-Chips are a viable tagging option for the study of crayfishes given their size, readability, and retention through molting cycles. We recommend that future studies repeat this experiment using smaller individuals to determine the minimum crayfish size compatible with p-Chip tagging. It is also important to test p-Chips with other crayfish species and compare the growth and mortality of crayfish tagged with p-Chips in natural habitats.

Journal of Crustacean Biology↗

USGS1994

An experiment to detect and locate lightning associated with eruptions of Redoubt Volcano

A commercially-available lightning-detection system was temporarily deployed near Cook Inlet, Alaska in an attempt to remotely monitor volcanogenic lightning associated with eruptions of Redoubt Volcano. The system became operational on February 14, 1990; lightning was detected in 11 and located in 9 of the 13 subsequent eruptions. The lightning was generated by ash clouds rising from pyroclastic density currents produced by collapse of a lava dome emplaced near Redoubt's summit. Lightning discharge (flash) location was controlled by topography, which channeled the density currents, and by wind direction. In individual eruptions, early flashes tended to have a negative polarity (negative charge is lowered to ground) while late flashes tended to have a positive polarity (positive charge is lowered to ground), perhaps because the charge-separation process caused coarse, rapid-settling particles to be negatively charged and fine, slow-settling particles to be positively charged. Results indicate that lightning detection and location is a useful adjunct to seismic volcano monitoring, particularly when poor weather or darkness prevents visual observation. The simultaneity of seismicity and lightning near a volcano provides the virtual certainty that an ash cloud is present. This information is crucial for aircraft safety and to warn threatened communities of impending tephra falls. The Alaska Volcano Observatory has now deployed a permanent lightning-detection network around Cook Inlet.

Journal of Volcanology and Geothermal Research↗

USGS2019

Assessing seasonal changes in microgravity at Yellowstone caldera

Microgravity time series at active volcanoes can provide an indication of mass change related to subsurface magmatic processes, but uncertainty is often introduced by hydrologic variations and other noise sources that cannot easily be isolated. We empirically assessed seasonality and noise by conducting four surveys over the course of May-October 2017 at Yellowstone caldera, Wyoming. Yellowstone experiences frequent changes in the rates and styles of seismicity and surface deformation, but the mechanisms of these changes are poorly understood because the characteristics of the driving fluids are not clear. Past gravity data from the caldera have yielded ambiguous results, possibly due to hydrologic noise. Given the strong visually observable changes in surface water and snow conditions over the course of our surveys, we expected to see significant variations in gravity. The net change in gravity, however, was less than 20 µGal at most sites, and there was no strong correlation with river and lake levels or snow conditions. Seasonal changes in gravity are therefore small compared to those that would be expected from magmatic activity, although they may be on the same order as those associated with Yellowstone’s hydrothermal system. We did find that noise levels in gravity data were highly dependent on site characteristics, with bedrock sites away from trees yielding the lowest levels of noise, and thin concrete pads in forested areas the highest. These results can be used to plan future surveys at Yellowstone and to reinterpret past data, and they provide guidance in terms of best practices for repeat gravity work on volcanoes worldwide.

Wyoming↗

USGS2023

Does hatchery rearing of lake trout affect their reproductive behavior in the wild?

Stocking of hatchery-reared fishes has been used with variable success as a management action to promote the recovery of populations and species. The practice has been controversial for several reasons, including uncertainty about whether the hatchery rearing experience may affect reproduction after release. Fine-scale acoustic telemetry was used during three spawning seasons to test whether hatchery rearing affects the reproductive behavior of lake trout using a spawning shoal complex in northern Lake Huron. Within sex, wild- and hatchery-reared fish behaved similarly, but significant behavioral differences occurred between sexes. Lake trout of both sexes moved synchronously onto the spawning shoals at the completion of autumn thermal turnover and occupied the same spawning sites (confirmed visually by presence of fertilized eggs) on the shoals. Male lake trout tended to congregate directly on spawning sites, with duration of occupancy varying greatly among years. Female lake trout spent less time on spawning shoals than males and congregated less at spawning sites on shoals. Most fish visited multiple spawning sites among shoals per season, with many making multiple transits among individual spawning sites. We found no evidence to support the hypothesis that hatchery rearing impairs spawning behavior of lake trout and, therefore, conclude that behavior deficiencies on the spawning ground are likely not an impediment to rehabilitation of lake trout in northern Lake Huron. Our study narrows the field of possible impediments to lake trout rehabilitation in the Great Lakes and provides insights that expand the conceptual model of lake trout spawning behavior.

Michigan↗

USGS1998

Optical-cell evidence for superheated ice under gas-hydrate-forming conditions

We previously reported indirect but compelling evidence that fine-grained H 2 O ice under elevated CH 4 gas pressure can persist to temperatures well above its ordinary melting point while slowly reacting to form methane clathrate hydrate. This phenomenon has now been visually verified by duplicating these experiments in an optical cell while observing the very slow hydrate-forming process as the reactants were warmed from 250 to 290 K at methane pressures of 23 to 30 MPa. Limited hydrate growth occurred rapidly after initial exposure of the methane gas to the ice grains at temperatures well within the ice subsolidus region. No evidence for continued growth of the hydrate phase was observed until samples were warmed above the equilibrium H 2 O melting curve. With continued heating, no bulk melting of the ice grains or free liquid water was detected anywhere within the optical cell until hydrate dissociation conditions were reached (292 K at 30 MPa), even though full conversion of the ice grains to hydrate requires 6−8 h at temperatures approaching 290 K. In a separate experimental sequence, unreacted portions of H 2 O ice grains that had persisted to temperatures above their ordinary melting point were successfully induced to melt, without dissociating the coexisting hydrate in the sample tube, by reducing the pressure overstep of the equilibrium phase boundary and thereby reducing the rate of hydrate growth at the ice−hydrate interface. Results from similar tests using CO 2 as the hydrate-forming species demonstrated that this superheating effect is not unique to the CH 4 −H 2 O system.

Journal of Physical Chemistry B↗