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Results for “Journal of Visualized Experiments”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

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At least 37 records · Page 2Linked to original sources
USGS1990

Search path of a fossorial herbivore, Geomys bursarius , foraging in structurally complex plant communities

The influence of habitat patchiness and unpalatable plants on the search path of the plains pocket gopher ( Geomys bursarius ) was examined in outdoor enclosures. Separate experiments were used to evaluate how individual animals explored (by tunnel excavation) enclosures free of plants except for one or more dense patches of a palatable plant ( Daucus carota ), a dense patch of an unpalatable species ( Pastinaca sativa ) containing a few palatable plants ( D. carota ), or a relatively sparse mixture of palatable ( D. carota ) and unpalatable ( Raphanus sativus ) species. Only two of eight individuals tested showed the predicted pattern of concentrating search effort in patches of palatable plants. The maintenance of relatively high levels of effort in less profitable sites may reflect the security afforded food resources by the solitary social system and fossorial lifestyle of G. bursarius . Unpalatable plants repelled animals under some conditions, but search paths in the sparsely planted mixed-species treatment suggest animals can use visual or other cues to orient excavations. Evidence supporting area-restricted search was weak. More information about the use of visual cues by G. bursarius and the influence of experience on individual search mode is needed for refining current models of foraging behavior in this species.

Journal of Mammalogy↗
USGS2018

A spatio-contextual probabilistic model for extracting linear features in hilly terrain from high-resolution DEM data

This paper introduces our research in developing a probabilistic model to extract linear terrain features from high resolution DEM (Digital Elevation Model) data. The proposed model takes full advantage of spatio-contextual information to characterize terrain changes. It first derives a quantifiable measure of spatio-contextual patterns of linear terrain feature, such as ridgelines, valley lines and crater boundaries, and then adopts multiple neighborhood analysis and a probability model to address data uncertainty in terrain surface modeling. Different from traditional approaches, the proposed model has the ability to achieve near-automated processing, and to support effective extraction of terrain features in both smooth and rough surfaces. Through a series of experiments, we demonstrate that the proposed approach outperforms existing techniques, including: thresholding, stream/drainage network analysis, visual descriptor, object-based image analysis and edge detection. We hope this work contributes to both the geospatial data science and geomorphology communities with a new way of utilizing high-resolution imagery in terrain analysis.

International Journal of Geographical Information ↗
USGS2017

Semi-arid grassland bird responses to patch-burn grazing and drought

As grassland birds of central North America experience steep population declines with changes in land use, management of remaining tracts becomes increasingly important for population viability. The integrated use of fire and grazing may enhance vegetation heterogeneity and diversity in breeding birds, but the subsequent effects on reproduction are unknown. We examined the influence of patch-burn grazing management in shortgrass steppe in eastern Colorado on habitat use and reproductive success of 3 grassland bird species, horned lark (Eremophila alpestris), lark bunting (Calamospiza melanocorys), and McCown’s longspur (Rhynchophanes mccownii), at several spatial scales during 2011 and 2012. Although no simple direct relationship to patch-burn grazing treatment existed, habitat selection depended on precipitation- and management-induced vegetation conditions and spatial scale. All species selected taller-than-expected vegetation at the nest site, whereas at the territory scale, horned larks and McCown’s longspurs selected areas with low vegetation height and sparse cover of tall plants (taller than the dominant shortgrasses). Buntings nested primarily in unburned grassland under average rainfall. Larks and longspurs shifted activity from patch burns during average precipitation (2011) to unburned pastures during drought (2012). Daily survival rate (DSR) of nests varied with time in season, species, weather, and vegetation structure. Daily survival rate of McCown’s longspur nests did not vary with foliar cover of relatively tall vegetation at the nest under average precipitation but declined with increasing cover during drought. At the 200-m scale, increasing cover of shortgrasses, rather than taller plant species, improved DSR of larks and longspurs. These birds experience tradeoffs in the selection of habitat at different spatial scales: tall structure at nests may reduce visual detection by predators and provide protection from sun, wind, and rain, yet taller structure surrounding territories may host nest predators. Patch-burn grazing management in combination with other strategies that retain taller-structured vegetation may help sustain a diversity of breeding habitats for shortgrass birds under varying weather conditions.

Journal of Wildlife Management↗
USGS1996

Can shrub cover increase predation risk for a desert rodent?

Previous research indicates that predation risk may influence activity patterns, habitat partitioning, and community structure of nocturnal desert rodents. Shrub microhabitat is typically considered safer than open microhabitat for these small mammals. We investigated predation risk for Townsend's ground squirrels (Spermophilus townsendii), which are diurnal desert rodents that detect predators visually and use burrows for refuge. Our results suggested that shrub cover may increase risk for these squirrels by decreasing their ability to escape from predators. Our field experiment indicated that running speeds of juvenile squirrels were lower in shrub (Ceratoides lanata) habitat than in open areas. Shrub cover was also associated with shorter predator-detection distances (mammalian and avian) and fewer refuges (burrow entrances per hectare) than in open areas in one year but not in another. Our study demonstrated that the visual and locomotive obstruction of vegetative cover may increase predation risk for diurnal desert rodents and that elements of habitat-dependent risk may be temporally dynamic.

Canadian Journal of Zoology↗
USGS1985

Adsorption and desorption of hexavalent chromium in an alluvial aquifer near Telluride, Colorado

A laboratory investigation of reactions between hexavalent chromium [Cr(VI)] and alluvium was conducted to evaluate reactions of Cr(VI) contaminating an alluvial aquifer near Telluride, CO and to determine the mechanisms responsible for these reactions. Uncontaminated alluvium and groundwater (spiked with CrO 4 2− ) from the study site were used in batch and column experiments. Results of these experiments show that Cr(VI) was adsorbed by the alluvium. Distribution coefficients from batch experiments ranged from 52 L/kg at an equilibrium CrO 4 2− concentration of 0.4 µ mol/L to 1.7 L/kg at an equilibrium concentration of 1400 µ mol/L. The zero point of charge for the alluvium was approximately 8.3, and the alluvium had a positive net charge at the groundwater pH of 6.8. Visual and chemical evidence indicated that Fe oxide and hydroxide coatings on the alluvial particles principally were responsible for the adsorption of Cr(VI). During column experiments, Cr(VI) initially was desorbed easily from the alluvium by Cr‐free groundwater; however, the rate of desorption decreased rapidly, and > 60 pore volumes of groundwater were required to decrease the effluent concentration of Cr(VI) to 3 µ mol/L [drinking water standard for Cr(VI) = 1 µ mol/L]. The quantity of Cr(VI) adsorbed varied with the type and concentration of other anions in solution.

Colorado↗
USGS2011

Canine detection of free-ranging brown treesnakes on Guam

We investigated canine teams (dogs and their handlers) on Guam as a potential tool for finding invasive brown treesnakes (Boiga irregularis) in the wild. Canine teams searched a 40 × 40 m forested area for a snake that had consumed a dead mouse containing a radio-transmitter. To avoid tainting the target or target area with human scent, no snake was handled or closely approached prior to searches. Trials were conducted during the morning when these nocturnal snakes were usually hidden in refugia. A radiotracker knew the snake's location, but dog handlers and search navigators did not. Of 85 trials conducted over four months, the two canine teams had an average success rate of 35% of correctly defining an area ≤ 5 × 5 m that contained the transmittered snake; the team with more experience prior to the trials had a success rate of 44% compared with 26% for the less experienced team. Canine teams also found 11 shed skins from wild snakes. Although dogs alerted outside the vicinity of transmittered snakes, only one wild, non-transmittered snake was found during the trials, possibly reflecting the difficulty humans have in locating non-transmittered brown treesnakes in refugia. We evaluated success at finding snakes as a function of canine team, number of prior trials (i.e. experience gained during the trials), recent canine success at finding a target snake, various environmental conditions, snake perch height, and snake characteristics (snout-vent length and sex). Success rate increased over the course of the trials. Canine team success also increased with increasing average humidity and decreased with increasing average wind speed. Our results suggest dogs could be useful at detecting brown treesnakes in refugia, particularly when compared to daytime visual searches by humans, but techniques are needed to help humans find and extract snakes once a dog has alerted.

New Zealand Journal of Ecology↗
USGS2023

Detection and quantification of preferential flow using artificial rainfall with multiple experimental approaches

Preferential flow in the unsaturated zone strongly influences important hydrologic processes, such as infiltration, contaminant transport, and aquifer recharge. Because it entails various combinations of physical processes arising from the interactions of water, air, and solid particles in a porous medium, preferential flow is highly complex. Major research is needed to improve the ability to understand, quantify, model, and predict preferential flow. Toward a solution, a combination of diverse experimental measurements at multiple scales, from laboratory scale to mesoscale, has been implemented to detect and quantify preferential paths in carbonate and karstic unsaturated zones. This involves integration of information from (1) core samples, by means of mercury intrusion porosimeter, evaporation, quasi-steady centrifuge and dewpoint potentiometer laboratory methods, to investigate the effect of pore-size distribution on hydraulic characteristics and the potential activation of preferential flow, (2) field plot experiments with artificial sprinkling, to visualize preferential pathways related to secondary porosity, through use of geophysical measurements, and (3) mesoscale evaluation of field data through episodic master recession modeling of episodic recharge. This study demonstrates that preferential flow processes operate from core scale to two different field scales and impact on the qualitative and quantitative groundwater status, by entailing fast flow with subsequent effects on recharge rate and contaminant mobilizing. The presented results represent a rare example of preferential flow detection and numerical modeling by reducing underestimation of the recharge and contamination risks.

Bari↗
USGS2005

Resilience of predators to fishing pressure on coral patch reefs

Numbers and biomass of piscivorous fish and their predation on other fish may often be high in undisturbed coral reef communities. The effects of such predation have sometimes been studied by removal of piscivores (either experimentally or by fishermen). Such perturbations have usually involved removal of large, highly vulnerable, mobile piscivores that are often actively sought in fisheries. The effects of fishing on smaller, demersal, semi-resident piscivores have been little studied. We studied such effects on the fish communities of patch reefs at Midway atoll by experimentally removing major resident, demersal, piscivorous fishes. First, four control reefs and four experimental reefs were selected, their dimensions and habitats mapped, and their visible fish communities censused repeatedly over 1 year. Census of all control and experimental reefs was continued for the following 39 months, during which known piscivores were collected repeatedly by hand spearing. Records were kept of catch and effort to calculate CPUE as an index of predator density. Spearfishing on the experimental reefs removed 2504 piscivorous fish from 12 families and 43 taxa (mostly species). The species richness of the catch did not show an overall change over the duration of the experiment. Spearman rank correlation analysis showed some unexpected positive correlations for density in numbers and biomass of major fished piscivorous groups (especially lizardfish) over the experiment. Only two relatively minor fished piscivorous taxa declined in abundance over the experiment, while the overall abundance of piscivores increased. Visual censuses of fish on the experimental reefs also failed to show reduction of total piscivores over the full experimental period. No significant trend in the abundance of lizardfish censused over the full period was apparent on any of the control reefs. The high resilience of piscivores on these experimental reefs to relatively intense fishing pressure could result from their protracted recruitment seasons, high immigration rates, cryptic habits, or naturally high abundances. A major factor was the high immigration rates of lizardfish, replacing lizardfish and other less mobile piscivores removed from the reefs by spearing. On the fished reefs, the removed lizardfish population replaced itself >20 times during the experiment; other piscivorous taxa replaced themselves only 5 times.

Journal of Experimental Marine Biology and Ecology↗
USGS2005

Light-mediated predation by northern squawfish on juvenile Chinook salmon

Northern squawfish Ptychocheilus oregonensis cause significant mortality of juvenile salmon in the lower Columbia River Basin (U.S.A.). The effects of light intensity on this predator-prey interaction were examined with laboratory experiments and modelling studies. In laboratory experiments, the rate of capture of subyearling chinook salmon Oncorhynchus tshawytscha by northern squawfish was inversely related to light intensity. In a large raceway, about five times more salmon were captured during 4 h periods of relative darkness (0–03 Ix) than during periods with high light intensity (160 Ix). The rate of predation could be manipulated by increasing or decreasing light intensity. A simulation model was developed for visual predators that encounter, attack, and capture juvenile salmon, whose schooling behaviour was light-sensitive. The model was fitted to laboratory results using a Monte Carlo filtering procedure. Model-predicted predation rate was especially sensitive to the visual range of predators at low light intensity and to predator search speed at high light. Modelling results also suggested that predation by northern squawfish on juvenile salmon may be highest across a narrow window of fight intensity.

Journal of Fish Biology↗
USGS2009

Web GIS in practice VII: stereoscopic 3-D solutions for online maps and virtual globes

Because our pupils are about 6.5 cm apart, each eye views a scene from a different angle and sends a unique image to the visual cortex, which then merges the images from both eyes into a single picture. The slight difference between the right and left images allows the brain to properly perceive the 'third dimension' or depth in a scene (stereopsis). However, when a person views a conventional 2-D (two-dimensional) image representation of a 3-D (three-dimensional) scene on a conventional computer screen, each eye receives essentially the same information. Depth in such cases can only be approximately inferred from visual clues in the image, such as perspective, as only one image is offered to both eyes. The goal of stereoscopic 3-D displays is to project a slightly different image into each eye to achieve a much truer and realistic perception of depth, of different scene planes, and of object relief. This paper presents a brief review of a number of stereoscopic 3-D hardware and software solutions for creating and displaying online maps and virtual globes (such as Google Earth) in "true 3D", with costs ranging from almost free to multi-thousand pounds sterling. A practical account is also given of the experience of the USGS BRD UMESC (United States Geological Survey's Biological Resources Division, Upper Midwest Environmental Sciences Center) in setting up a low-cost, full-colour stereoscopic 3-D system.

International Journal of Health Geographics↗
USGS2006

Visual implant elastomer and anchor tag retention in largemouth bass

We double-marked largemouth bass Micropterus salmoides with Floy FD-68B anchor tags and visible implant elastomer (VIE) marks before stocking to compare retention of the two marks for age-0 (178 mm total length [TL]) and age-1 (273 mm TL) largemouth bass. In a short-term (31-d) evaluation, retention rate of anchor tags was over 94% for each age-class and retention of VIE marks was 98% in both age-classes. In a longer-term comparison of fish stocked into the Ohio River, retention was substantially higher for VIE marks (92.9%) than for anchor tags (42.9%) after 403 d (ages combined). Although anchor tags had high retention in two sizes of largemouth bass during the short-term experiment, they should not be used in situations where accurate identification of marked fish is required for periods longer than 123 d. ?? Copyright by the American Fisheries Society 2006.

North American Journal of Fisheries Management↗
USGS2002

Solubility relations in the system sodium chloride-ferrous chloride-water between 25 and 70.degree.C at 1 atm

Solubility relations in the ternary system NaCl-FeCl2-H2O have been determined by the visual polythermal method at 1 atm from 20 to 85??C along six composition lines. These she composition lines are defined by mixing FeCl2??4H2O with six aqueous NaCl solutions containing 5, 10, 11, 15, 20, and 25 wt % of NaCl, respectively. The solid phases encountered in these experiments were NaCl and FeCl2??4H2O. The maximum uncertainties in these measurements are ??0.02 wt % NaCl and ??0.15??C. The data along each composition line were regressed to a smooth curve when only one solid phase was stable. When two solids were stable along a composition line, the data were regressed to two smooth curves, the intersection of which indicated the point where the two solids coexisted. The maximum deviation of the measured solubilities from the smoothed curves is 0.14 wt % FeCl2. Isothermal solubilities of halite and FeCl2??4H2O were calculated from these smoothed curves at 25, 50, and 70 ??C.

Journal of Chemical and Engineering Data↗
USGS2009

Testing the importance of auditory detections in avian point counts

Recent advances in the methods used to estimate detection probability during point counts suggest that the detection process is shaped by the types of cues available to observers. For example, models of the detection process based on distance-sampling or time-of-detection methods may yield different results for auditory versus visual cues because of differences in the factors that affect the transmission of these cues from a bird to an observer or differences in an observer's ability to localize cues. Previous studies suggest that auditory detections predominate in forested habitats, but it is not clear how often observers hear birds prior to detecting them visually. We hypothesized that auditory cues might be even more important than previously reported, so we conducted an experiment in a forested habitat in North Carolina that allowed us to better separate auditory and visual detections. Three teams of three observers each performed simultaneous 3-min unlimited-radius point counts at 30 points in a mixed-hardwood forest. One team member could see, but not hear birds, one could hear, but not see, and the third was nonhandicapped. Of the total number of birds detected, 2.9% were detected by deafened observers, 75.1% by blinded observers, and 78.2% by nonhandicapped observers. Detections by blinded and nonhandicapped observers were the same only 54% of the time. Our results suggest that the detection of birds in forest habitats is almost entirely by auditory cues. Because many factors affect the probability that observers will detect auditory cues, the accuracy and precision of avian point count estimates are likely lower than assumed by most field ornithologists. ?? 2009 Association of Field Ornithologists.

Journal of Field Ornithology↗
USGS2011

Method for detecting moment connection fracture using high-frequency transients in recorded accelerations

The 1994 Northridge earthquake caused brittle fractures in steel moment frame building connections, despite causing little visible building damage in most cases. Future strong earthquakes are likely to cause similar damage to the many un-retrofitted pre-Northridge buildings in the western US and elsewhere. Without obvious permanent building deformation, costly intrusive inspections are currently the only way to determine if major fracture damage that compromises building safety has occurred. Building instrumentation has the potential to provide engineers and owners with timely information on fracture occurrence. Structural dynamics theory predicts and scale model experiments have demonstrated that sudden, large changes in structure properties caused by moment connection fractures will cause transient dynamic response. A method is proposed for detecting the building-wide level of connection fracture damage, based on observing high-frequency, fracture-induced transient dynamic responses in strong motion accelerograms. High-frequency transients are short (<1 s), sudden-onset waveforms with frequency content above 25 Hz that are visually apparent in recorded accelerations. Strong motion data and damage information from intrusive inspections collected from 24 sparsely instrumented buildings following the 1994 Northridge earthquake are used to evaluate the proposed method. The method’s overall success rate for this data set is 67%, but this rate varies significantly with damage level. The method performs reasonably well in detecting significant fracture damage and in identifying cases with no damage, but fails in cases with few fractures. Combining the method with other damage indicators and removing records with excessive noise improves the ability to detect the level of damage.

Journal of Constructional Steel Research↗
USGS2007

PIT tags increase effectiveness of freshwater mussel recaptures

Translocations are used increasingly to conserve populations of rare freshwater mussels. Recovery of translocated mussels is essential to accurate assessment of translocation success. We designed an experiment to evaluate the use of passive integrated transponder (PIT) tags to mark and track individual freshwater mussels. We used eastern lampmussels (Lampsilis radiata radiata) as a surrogate for 2 rare mussel species. We assessed internal and external PIT-tag retention in the laboratory and field. Internal tag retention was high (75-100%), and tag rejection occurred primarily during the first 3 wk after tagging. A thin layer of nacre coated internal tags 3 to 4 mo after insertion, suggesting that long-term retention is likely. We released mussels with external PIT tags at 3 field study sites and recaptured them with a PIT pack (mobile interrogation unit) 8 to 10 mo and 21 to 23 mo after release. Numbers of recaptured mussels differed among study sites; however, we found more tagged mussels with the PIT-pack searches with visual confirmation (72-80%) than with visual searches alone (30-47%) at all sites. PIT tags offer improved recapture of translocated mussels and increased accuracy of posttranslocation monitoring. ?? 2007 by The North American Benthological Society.

Journal of the North American Benthological Societ↗
USGS1998

Do black ducks and wood ducks habituate to aircraft disturbance?

Requests to increase military aircraft activity in some training facilities in the United States have raised the need to determine if waterfowl and other wildlife are adversely affected by aircraft disturbance. We hypothesized that habituation was a possible proximate factor influencing the low proportion of free-ranging ducks reacting to military aircraft activities in a training range in coastal North Carolina during winters 1991 and 1992. To test this hypothesis, we subjected captive, wild-strain American black ducks (Anas rubripes) and wood ducks (Aix sponsa) to actual and simulated activities of jet aircraft. In the first experiment, we placed black ducks in an enclosure near the center of aircraft activities on Piney Island, a military aircraft target range in coastal North Carolina. The proportion of times black ducks reacted (e.g., alert posture, fleeing response) to visual and auditory aircraft activity decreased from 38 to 6% during the first 17 days of confinement. Response rates remained stable at 5.8% thereafter. In the second experiment, black ducks and wood ducks were exposed to 6 different recordings of jet noise. The proportion of times black ducks reacted to noise decreased (P < 0.05) from first day of exposure (25%) to last (i.e., day 4; 8%). Except for a 2% difference in comfort, we detected no differences (P > 0.05) in time-activity budgets of black ducks between pre-exposure to noise and 24 hr after first exposure. Unlike black ducks, wood duck responses to jet noise did not decrease uniformly among experimental groups following initial exposure to noise (P = 0.01). We conclude that initial exposure to aircraft noise elicits behavioral responses from black ducks and wood ducks. With continued exposure of aircraft noise, black ducks may become habituated. However, wood ducks did not exhibit the same pattern of response, suggesting that the ability of waterfowl to habituate to aircraft noise may be species specific.

Journal of Wildlife Management↗
USGS2001

Nomad Rover field experiment, Atacama Desert, Chile 1. Science results overview

Nomad was deployed for a 45 day traverse in the Atacama Desert, Chile, during the summer of 1997. During this traverse, 1 week was devoted to science experiments. The goal of the science experiments was to test different planetary surface exploration strategies that included (1) a Mars mission simulation, (2) a science on the fly experiment, where the rover was kept moving 75% of the operation time. (The goal of this operation was to determine whether or not successful interpretation of the environment is related to the time spent on a target. The role of mobility in helping the interpretation was also assessed.) (3) a meteorite search using visual and instrumental methods to remotely identify meteorites in extreme environments, and (4) a time-delay experiment with and without using the panospheric camera. The results were as follow: the remote science team positively identified the main characteristics of the test site geological environment. The science on the fly experiment showed that the selection of appropriate targets might be even more critical than the time spent on a study area to reconstruct the history of a site. During the same operation the science team members identified and sampled a rock from a Jurassic outcrop that they proposed to be a fossil. The presence of paleolife indicators in this rock was confirmed later by laboratory analysis. Both visual and instrumental modes demonstrated the feasibility, in at least some conditions, of carrying out a field search for meteorites by using remote-controlled vehicles. Finally, metrics collected from the observation of the science team operations, and the use team members made of mission data, provided critical information on what operation sequences could be automated on board rovers in future planetary surface explorations.

Atacama Desert↗
USGS1978

Hydrochemistry and hydrodynamics of injecting an iron-rich pickling liquor into a dolomitic sandstone: A laboratory study

Waste pickling liquor containing high concentrations of iron salts was injected into cores of quartzite, sandstone, and dolomite in a laboratory study to determine what effect this procedure might have on the permeability of these rock types. Experiments were performed at field conditions 40°C and 13.8 MPa (megapascals) in a high-pressure triaxial chamber similar to that used in rock-mechanics testing but modified to allow downstream sample collection of effluent liquids and direct visual monitoring at in-situ conditions. Five samples were tested, ranging in effective porosity from 2.9 to 13 percent and in lithology from a quartzite to a dolomite. Hydraulic conductivity of the quartzitic samples remained unchanged during injection of over 50 pore volumes of pickling liquor, but significant decreases in the hydraulic conductivity of dolomitic samples were observed. Chemical analyses of effluents from a dolomitic sample suggest that carbonate minerals were dissolving and iron was precipitating. Clogging of pore space by CO 2 entrapment or by CaCl 2 precipitation did not seem to play a role in decreasing hydraulic conductivity because injection into a dolomitic core of more than 140 pore volumes of HCl at a concentration similar to that of the pickling liquor caused only a slight decrease in hydraulic conductivity compared with the decrease observed when an additional 30 pore volumes of pickling liquor were subsequently injected.

Journal of Research of the U.S. Geological Survey↗