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USGS2009

Fungal endophytes: diversity and functional roles

All plants in natural ecosystems appear to be symbiotic with fungal endophytes. This highly diverse group of fungi can have profound impacts on plant communities through increasing fitness by conferring abiotic and biotic stress tolerance, increasing biomass and decreasing water consumption, or decreasing fitness by altering resource allocation. Despite more than 100 yr of research resulting in thousands of journal articles, the ecological significance of these fungi remains poorly characterized. Historically, two endophytic groups (clavicipitaceous (C) and nonclavicipitaceous (NC)) have been discriminated based on phylogeny and life history traits. Here, we show that NC-endophytes represent three distinct functional groups based on host colonization and transmission, in planta biodiversity and fitness benefits conferred to hosts. Using this framework, we contrast the life histories, interactions with hosts and potential roles in plant ecophysiology of C- and NC-endophytes, and highlight several key questions for future work in endophyte biology.

New Phytologist↗

USGS2018

UZIG research: Measurement and characterization of unsaturated zone processes under wide-ranging climates and changing conditions

Unsaturated zone properties and processes are central to understanding the interacting effects of land-use change, contamination, and hydroclimate on our ability to grow food, sustain clean water supplies, and minimize loss of life and property. Advances in unsaturated zone science are being achieved through collaborations across traditional boundaries where information from biological, physical, and chemical disciplines is combined for new insights. The Unsaturated Zone Interest Group (UZIG) is an organization that exists principally to promote multidisciplinary collaborations and the sharing of ideas, expertise, and technical assets. Here we summarize key findings from 14 papers, several of which originated from a meeting convened by UZIG in 2017 at the University of Florida in Gainesville titled “Land-Use Change, Climate Change, and Hydrologic Extremes: Unsaturated Zone Responses and Feedbacks.” This special section of Vadose Zone Journal contains multidisciplinary research in three general categories relevant to measuring and understanding unsaturated zone responses to changing land uses and climate: (i) unsaturated zone properties and processes; (ii) soil–plant–atmosphere interactions; and (iii) novel field sampling devices. A strong cross-cutting theme in these papers is the value of continuous monitoring data and ways of utilizing them to discover novel hydrologic, biologic, and pedologic information. As climatic and land-use conditions change and demands for resources and stresses on ecosystems continue to intensify, it is vital to improve our fundamental understanding of the processes at work in the unsaturated zone. Toward that goal, we discuss the need for improved ground-based unsaturated zone monitoring networks.

Vadose Zone Journal↗

USGS1975

Phosphate fertilizer materials in Colombia; imports, uses, and domestic supplies

The distribution of potentially economic phosphate deposits and the locations of major users of phosphate products in Colombia are some of the economic factors that indicate the capability of the deposits to supply domestic demands. Much research is required to determine the types of processing plants needed and to outline changes from standard procedures, but there is little doubt that with proper planning a phosphate chemical industry could be developed that would supply domestic demands for the forseeable future.

Journal of Research of the U.S. Geological Survey↗

USGS1976

The Placer River Silt — An intertidal deposit caused by the 1964 Alaska earthquake

At the head of Turnagain Arm near Anchorage, the major lasting geologic consequence of the Alaska earthquake of 1964 was deposition of the Placer River Silt, an intertidal deposit covering an area of more than 18 km 2 and containing more than 20X10 6 m 3 of sediment. This formation, which was derived from erosion of intertidal bars in Turnagain Arm, averages 1.5 m thick seaward of the Seward Highway and 0.9 m thick landward. Its distribution is controlled both, by the arrangement of the major streams that enter tidewater and by manmade features such as the highway and railroad embankments. The Placer River Silt is still being deposited. The contemporary lowland sedimentation system of the Portage area includes a number of depositional settings: (1) In the Placer River Silt upper tidal flats, levees, and channelway fans, (2) elsewhere in the intertidal zone tidal stream channels, lower tidal flats, and saltwater marsh, and (3) in the supratidal zone gravel levees, freshwater marsh, bogs, and lakes. Since 1964, the critical environmental results of the earthquake-caused deposition have been abandonment of the settlement of Portage, formation of an unsightly blanket of silt, destruction of natural plant communities, localized erosion, and creation of quicksand hazards.

Alaska↗

USGS2010

Vulnerability of white spruce tree growth in interior Alaska in response to climate variability: Dendrochronological, demographic, and experimental perspectives

This paper integrates dendrochronological, demographic, and experimental perspectives to improve understanding of the response of white spruce ( Picea glauca (Moench) Voss) tree growth to climatic variability in interior Alaska. The dendrochronological analyses indicate that climate warming has led to widespread declines in white spruce growth throughout interior Alaska that have become more prevalent during the 20th century. Similarly, demographic studies show that white spruce tree growth is substantially limited by soil moisture availability in both mid- and late-successional stands. Interannual variability in tree growth among stands within a landscape exhibits greater synchrony than does growth of trees that occupy different landscapes, which agrees with dendrochronological findings that the responses depend on landscape position and prevailing climate. In contrast, the results from 18 years of a summer moisture limitation experiment showed that growth in midsuccessional upland stands was unaffected by moisture limitation and that moisture limitation decreased white spruce growth in floodplain stands where it was expected that growth would be less vulnerable because of tree access to river water. Taken together, the evidence from the different perspectives analyzed in this study clearly indicates that white spruce tree growth in interior Alaska is vulnerable to the effects of warming on plant water balance.

Alaska↗

USGS2023

Integrated rangeland fire management strategy actionable science plan completion assessment: Invasives topic, 2015–20

Loss and degradation of sagebrush rangelands due to an accelerated invasive annual grass-wildfire cycle and other stressors are significant management, conservation, and economic issues in the western United States. These sagebrush rangelands comprise a unique biome spanning 11 states, support over 350 wildlife species, and provide important ecosystem services that include stabilizing the economies of western communities. Impacts to sagebrush ecosystem processes over large areas due to the annual grass-wildfire cycle necessitated the development of a coordinated, science-based strategy for improving efforts to achieve long-term protection, conservation, and restoration of sagebrush rangelands, which was framed in 2015 under the Integrated Rangeland Fire Management Strategy (IRFMS). Central to this effort was the development of an Actionable Science Plan (Plan) that identified 37 priority science needs (Needs) for informing the actions proposed under the 5 topics (Fire, Invasives, Restoration, Sagebrush and Sage-Grouse, Climate and Weather) that were part of the collective focus of the IRFMS. Notable keys to this effort were identification of the Needs co-produced by managers and researchers, and a focus on resulting science being “actionable.” Substantial investments aimed at fulfilling the Needs identified in the Plan have been made since its release in 2016. While the state of the science has advanced considerably, the extent to which knowledge gaps remain relative to identified Needs is relatively unknown. Moreover, new Needs have likely emerged since the original strategy as results from actionable science reveal new questions and possible (yet untested) solutions. A quantifiable assessment of the progress made on the original science Needs can identify unresolved gaps and new information that can help inform prioritization of future research efforts. This report details a systematic literature review that evaluated how well peer-reviewed journal articles and formal technical reports published between January 1, 2015, and December 31, 2020, addressed six needs (hereinafter “Needs”) identified under the Invasives topic in the Plan. The topic outlined research Needs related to the control of invasive plant species in sagebrush rangelands, with a special emphasis on invasive annual grasses. We established the level of progress towards addressing each Need following a standardized set of criteria, and developed summaries detailing how research objectives nested within Needs identified in the Plan (“Next Steps”) were either addressed well, partially addressed, or remain outstanding (that is, addressed poorly) in the literature through 2020. Our searches resulted in the inclusion of 198 science products that at least partially addressed a Need identified in the Invasives topic. The Needs that were well and partially addressed included: studies of natural and anthropogenic factors influencing the distribution and spread; methods of preventing, eradicating and controlling invasive plant species; development of mapping techniques that provide regularly updated annual grass and fine fuel projections; and assessment of the efficacy of potential cheatgrass biocontrol agents. Needs that were addressed poorly included (1) investigations of livestock grazing as a tool for managing invasive plants and (2) investigations of cheatgrass die-offs and identification and subsequent study of potential biocontrol agents associated with those die-offs. The information provided in this assessment will assist updating the Plan along with other science strategies.

western United States↗

USGS1976

Geology of the Brysch uranium mine, Karnes County, Texas

Approximately 13,700 tons (12,400 tonnes) of oxidized uranium ore, averaging about 0.1 percent U 2 O 8 , was mined during 1966 and 1967 from the lower unit of the Deweesville Sandstone Member of the upper Eocene Whitsett Formation, from depths of 75 to 90 feet (23-27 m). The mine is in the Karnes County uranium area, 3 miles (5 km) east of Falls City, Tex. Meta-autunite, Ca(UO 2 ) 2 (PO 4 ) 2 2-6H 2 O, and meta-tyuyamunite, Ca(UO 2 ) 2 (PO 4 ) 2 3-5H 2 O, were identified in samples of the ore. The host rock is light-colored, medium-grained, well-sorted feldspathic sandstone that contains fossil wood and Ophiomorpha . It also contains clinoptilolite, cristobalite, and montmorillonite that probably formed as alteration products of volcanic grains in the original sediment. The host rock was deposited in a beach environment near or on a delta formed at the mouth of a stream channel oriented roughly normal to the beach. The Deweesville can be traced for many miles on the surface and represents in general the point of maximum transgression in a transgressive-regressive cycle. The upper unit of the Deweesville, which overlies the host rock, is now exposed in the mine and contains, in ascending order, storm-beach, shoreface, beach, and tidal-flat facies. The shape of the ore body suggests that it originated as an unoxidized ore roll. The ore-bearing fluids may have entered through porous fluvial rock extending updip. Plant material, abundant in the original host sediment, probably supplied reductant necessary for the roll formation.

Texas↗

USGS1976

Relations among surficial materials, light intensity, and sycamore-seed germination along the Potomac River near Washington, D.C.

Seed of sycamore, a common tree on river flood plains, germinate in mineral soil exposed to high light intensities. Germination rates are low on surfaces covered with leaf litter, and seedlings die when shaded by closely spaced herbaceous plants. All germination rates were higher when seed were kept moist. Surflcial materials and light values in this study are similar to those on flood plains. Results were derived from counting seedlings after planting 1,000 seeds in each of several flats filled with different kinds of flood-plain and upland soils.

District of Columbia, Virginia↗

USGS1973

Archaeocycas and Phasmatocycas - new genera of Permian cycads

The generic names Archaeocycas and Phasmatocycas are introduced for two previously announced but unnamed new genera of Early Permian plants; these taxa are regarded as early stages in the cycadean lineage. The names arc formalized with diagnoses, illustrations, and type designations.

Journal of Research of the U.S. Geological Survey↗

USGS2015

Plant phenolics and absorption features in vegetation reflectance spectra near 1.66 μm

Past laboratory and field studies have quantified phenolic substances in vegetative matter from reflectance measurements for understanding plant response to herbivores and insect predation. Past remote sensing studies on phenolics have evaluated crop quality and vegetation patterns caused by bedrock geology and associated variations in soil geochemistry. We examined spectra of pure phenolic compounds, common plant biochemical constituents, dry leaves, fresh leaves, and plant canopies for direct evidence of absorption features attributable to plant phenolics. Using spectral feature analysis with continuum removal, we observed that a narrow feature at 1.66 μm is persistent in spectra of manzanita, sumac, red maple, sugar maple, tea, and other species. This feature was consistent with absorption caused by aromatic C- H bonds in the chemical structure of phenolic compounds and non-hydroxylated aromatics. Because of overlapping absorption by water, the feature was weaker in fresh leaf and canopy spectra compared to dry leaf measurements. Simple linear regressions of feature depth and feature area with polyphenol concentration in tea resulted in high correlations and low errors (% phenol by dry weight) at the dry leaf ( r 2 = 0.95, RMSE = 1.0%, n = 56), fresh leaf ( r 2 = 0.79, RMSE = 2.1%, n = 56), and canopy ( r 2 = 0.78, RMSE = 1.0%, n = 13) levels of measurement. Spectra of leaves, needles, and canopies of big sagebrush and evergreens exhibited a weak absorption feature centered near 1.63 μm, short ward of the phenolic compounds, possibly consistent with terpenes. This study demonstrates that subtle variation in vegetation spectra in the shortwave infrared can directly indicate biochemical constituents and be used to quantify them. Phenolics are of lesser abundance compared to the major plant constituents but, nonetheless, have important plant functions and ecological significance. Additional research is needed to advance our understanding of the spectral influences of plant phenolics and terpenes relative to dominant leaf biochemistry (water, chlorophyll, protein/nitrogen, cellulose, and lignin).

International Journal of Applied Earth Observation↗

USGS2021

Annotated bibliography of scientific research on Ventenata dubia published from 2010 to 2020

Integrating recent science into management decisions supports effective natural resource management and can lead to better resource outcomes. However, finding and accessing science information can be time consuming and costly. To assist in this process, the U.S. Geological Survey (USGS) is creating a series of annotated bibliographies on topics of management concern for western lands. Previously published reports introduced a methodology for preparing annotated bibliographies to facilitate the integration of recent, peer-reviewed science into resource management decisions. Therefore, relevant text from those efforts is reproduced here to frame the presentation. Invasive annual grasses are widely distributed throughout the western United States and threaten native ecosystems by altering fire regimes, replacing native plants, and altering grazing patterns, often with tremendous associated costs. One invasive annual grass, Ventenata dubia (hereafter, ventenata), was first introduced to the United States in the 1950s and has recently been identified as a management concern. Ventenata has a wide native geographic range, from Africa to northern Europe, and could thus potentially spread widely in the United States if left unmanaged. We compiled and summarized peer-reviewed journal articles, government reports, and data products on ventenata published between January 1, 2010, and August 27, 2020. We first conducted a systematic search of three reference databases and three government databases using the search phrase: “ventenata” OR “Ventenata dubia.” We refined the initial list of products by removing (1) duplicates, (2) products not written in English, (3) publications that were not focused in North America, (4) publications that were not published as research, data products, or scientific review articles in peer-reviewed journals or as formal technical reports, and (5) products for which ventenata was not a research focus or for which the study did not present new data or findings about ventenata. We summarized each product using a consistent structure (background, objectives, methods, location, findings, and implications) and identified the management topics (for example, species and population characteristics, habitat, control and management efforts) addressed by each product. We also noted which publications included new geospatial data. The review process for this annotated bibliography included an initial internal colleague review of each summary, requesting input on each summary from an author of the original publication, and a formal peer review. Our initial searches resulted in 505 total products, of which 29 met our criteria for inclusion. Nonnative invasive plants; weed management; behavior or demographics; dispersal, spread, vectors and pathways; site-scale habitat characteristics; survival; and weed management subtopic: herbicides were the management topics most commonly addressed. The online version of this annotated bibliography will be searchable by topic, location, and year; it will also include links to each original publication, where available. The studies compiled and summarized here may inform planning and management actions that seek to maintain and restore landscapes and control nonnative invasive species across the western United States.

Open-File Report↗

USGS2020

Assessing establishment and growth of agricultural plantings on reservoir mudflats

Winter drawdowns in flood control reservoirs create expansive mudflats that lack the vegetation typical of littoral zones, which reduces the amount of structure available for fish habitat. This study investigated the feasibility of establishing agricultural plantings as a management action to ameliorate mudflats by providing structural cover following reservoir refilling. We tested cool-season annual grasses and clovers applied in several mixed and monoculture treatments that were sown on the mudflats of Enid Reservoir, Mississippi, during the winter drawdown in three consecutive years. Soil samples were taken for analysis of pH and macronutrients prior to planting. Plantings were monitored until the following spring to evaluate effectiveness of establishment through ground coverage, height, and stem density sampling. Plots were assigned a seeding treatment of either grasses (ryegrass Lolium spp. or triticale x Triticosecale sp.), clovers (balansa clover Trifolium michelianum or berseem clover Trifolium alexandrinum ), or both (mixed plantings) or left as an unseeded control. Differences among plant treatments were assessed via repeated measures analysis of variance and differences among means evaluated with Tukey's honestly significant difference test. Soil productivity within the study area was poor all 3 years. Grasses germinated both when disked into the soil and when top sown, while clover only germinated when disked. Plots seeded with grasses performed better than control plots with respect to stem density, height, and ground coverage, while plots seeded with grass and clover mixtures performed better than control plots only with respect to height, and plots seeded with only clover did not perform significantly better than control plots. Results serve as an evaluation of the efficacy of agricultural plant establishment on the mudflats of a flood control reservoir, inform the direction of future research, and identify considerations regarding the application of agricultural plantings as a management tool to create fish habitat.

Mississippi↗

USGS2011

The humpbacked species richness-curve: A contingent rule for community ecology

Functional relationships involving species richness may be unimodal, monotonically increasing, monotonically decreasing, bimodal, multimodal, U-shaped, or with no discernable pattern. The unimodal relationships are the most interesting because they suggest dynamic, nonequilibrium community processes. For that reason, they are also contentious. In this paper, we provide a wide-ranging review of the literature on unimodal (humpbacked) species richness-relationships. Though not as widespread as previously thought, unimodal patterns of species richness are often associated with disturbance, predation and herbivory, productivity, spatial heterogeneity, environmental gradients, time, and latitude. These unimodal patterns are contingent on organism and environment; we examine unimodal species richness-curves involving plants, invertebrates, vertebrates, plankton, and microbes in marine, lacustrine, and terrestrial habitats. A goal of future research is to understand the contingent patterns and the complex, interacting processes that generate them.

International Journal of Ecology↗

USGS1988

Effect of submersed aquatic macrophytes on resource partitioning in yearling rock bass ( Ambloplites rupestris ) and pumpkinseeds ( Lepomis gibbosus ) in Lake St. Clair

Yearling rock bass ( Ambloplites rupestris ), pumpkinseeds ( Lepomis gibbosus ), macroinvertebrates, and submersed aquatic plants were sampled at 2- or 3-week intervals from June to October 1979 in a shallow, heavily vegetated embayment in Lake St. Clair to determine whether seasonal changes in plant canopy and plant taxonomic composition affected resource partitioning in these two fish species. In both species, numbers of prey and gut volumes increased with increasing plant canopy until the plant canopy reached a seasonal maximum in mid-summer. Rock bass consumed fewer, larger prey than pumpkinseeds while large Caenidae-Trichoptera-Coenagrionidae, the prey group most preferred by rock bass, was available. Pumpkinseeds ate smaller amphipods, gastropods, and chironomid-lepidopterans that were more abundant numerically than Caenidae-Trichoptera-Coenagrionidae. After mid-summer, the plant canopy declined slowly to one-half of the maximum value, but built-up densities of Hyalella azteca , gastropods, and chironomid-lepidopterans kept availability of prey high throughout late summer. Rock bass shifted to Gammarus , gastropods, and chironomid-lepidopterans as large Caenidae-Trichoptera-Coenagrionidae became scarce. Pumpkinseeds ate more prey in the late season and displayed no prey preference. Their gut volumes peaked in September. Apparently, increasing combined canopy of bushy plants and Heteranthera dubia hindered the foraging of rock bass more than that of pumpkinseeds and caused resource partitioning in the two species.

Journal of Great Lakes Research↗

USGS1974

Foods of breeding pintails in North Dakota

Food habits of breeding pintails ( Anas acuta ) were studied relative to sex, land use, and reproductive condition during the spring and summer of 1969, 1970, and 1971 in eastern North Dakota. Hens and drakes, respectively, consumed 79.2 percent and 30.0 percent animal matter on nontilled wetlands and consumed 16.6 percent and 1.1 percent animal matter on tilled wetlands. Aquatic dipterans (primarily larval forms), snails, fairy shrimp, and earthworms accounted for 71 percent of the diet of hens on nontilled wetlands, while barnyard grass ( Echinochloa crusgalli ) seeds formed 71 percent of the diet of hens on tilled wetlands. Cereal grain seeds formed 84 percent of the diet of 10 hens feeding on cropland. The diet of hens was influenced by reproductive status. Animal foods were predominant during the laying period (77.1 percent) but were less important in the postlaying diet (28.9 percent). Invertebrates formed 83.9 percent of the diet of renesting hens, 61.0 percent were dipteran larvae and snails. High consumption of animal foods during egg formation presumably is related to invertebrates being superior to plants in providing certain nutrients required for production of viable eggs. Research findings suggest that food requirements of prairie-nesting pintails can be met most effectively by providing pairs access to shallow, nontilled wetland habitat subject to periodic drawdowns.

North Dakota↗

USGS2014

Predictions of barrier island berm evolution in a time-varying storm climatology

Low-lying barrier islands are ubiquitous features of the world's coastlines, and the processes responsible for their formation, maintenance, and destruction are related to the evolution of smaller, superimposed features including sand dunes, beach berms, and sandbars. The barrier island and its superimposed features interact with oceanographic forces (e.g., overwash) and exchange sediment with each other and other parts of the barrier island system. These interactions are modulated by changes in storminess. An opportunity to study these interactions resulted from the placement and subsequent evolution of a 2 m high sand berm constructed along the northern Chandeleur Islands, LA. We show that observed berm length evolution is well predicted by a model that was fit to the observations by estimating two parameters describing the rate of berm length change. The model evaluates the probability and duration of berm overwash to predict episodic berm erosion. A constant berm length change rate is also predicted that persists even when there is no overwash. The analysis is extended to a 16 year time series that includes both intraannual and interannual variability of overwash events. This analysis predicts that as many as 10 or as few as 1 day of overwash conditions would be expected each year. And an increase in berm elevation from 2 m to 3.5 m above mean sea level would reduce the expected frequency of overwash events from 4 to just 0.5 event-days per year. This approach can be applied to understanding barrier island and berm evolution at other locations using past and future storm climatologies.

Louisiana↗

USGS2014

Standardized phenology monitoring methods to track plant and animal activity for science and resource management applications

Phenology offers critical insights into the responses of species to climate change; shifts in species’ phenologies can result in disruptions to the ecosystem processes and services upon which human livelihood depends. To better detect such shifts, scientists need long-term phenological records covering many taxa and across a broad geographic distribution. To date, phenological observation efforts across the USA have been geographically limited and have used different methods, making comparisons across sites and species difficult. To facilitate coordinated cross-site, cross-species, and geographically extensive phenological monitoring across the nation, the USA National Phenology Network has developed in situ monitoring protocols standardized across taxonomic groups and ecosystem types for terrestrial, freshwater, and marine plant and animal taxa. The protocols include elements that allow enhanced detection and description of phenological responses, including assessment of phenological “status”, or the ability to track presence–absence of a particular phenophase, as well as standards for documenting the degree to which phenological activity is expressed in terms of intensity or abundance. Data collected by this method can be integrated with historical phenology data sets, enabling the development of databases for spatial and temporal assessment of changes in status and trends of disparate organisms. To build a common, spatially, and temporally extensive multi-taxa phenological data set available for a variety of research and science applications, we encourage scientists, resources managers, and others conducting ecological monitoring or research to consider utilization of these standardized protocols for tracking the seasonal activity of plants and animals.

International Journal of Biometeorology↗

USGS2003

Fluid flow in the resurgent dome of Long Valley Caldera: Implications from thermal data and deep electrical sounding

Temperatures of 100??C are measured at 3 km depth in a well located on the resurgent dome in the center of Long Valley Caldera, California, despite an assumed >800??C magma chamber at 6-8 km depth. Local downflow of cold meteoric water as a process for cooling the resurgent dome is ruled out by a Pecle??t-number analysis of temperature logs. These analyses reveal zones with fluid circulation at the upper and lower boundaries of the Bishop Tuff, and an upflow zone in the metasedimentary rocks. Vertical Darcy velocities range from 10 to 70 cm a-1. A 21-km-long geoelectrical profile across the caldera provides resistivity values to the order of 100 to >103 ??m down to a depth of 6 km, as well as variations of self-potential. Interpretation of the electrical data with respect to hydrothermal fluid movement confirms that there is no downflow beneath the resurgent dome. To explain the unexpectedly low temperatures in the resurgent dome, we challenge the common view that the caldera as a whole is a regime of high temperatures and the resurgent dome is a local cold anomaly. Instead, we suggest that the caldera was cooled to normal thermal conditions by vigorous hydrothermal activity in the past, and that a present-day hot water flow system is responsible for local hot anomalies, such as Hot Creek and the area of the Casa Diablo geothermal power plant. The source of hot water has been associated with recent shallow intrusions into the West Moat. The focus of planning for future power plants should be to locate this present-day flow system instead of relying on heat from the old magma chamber. ?? 2003 Elsevier B.V. All rights reserved.

Journal of Volcanology and Geothermal Research↗