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USGS2014

Mechanisms driving recruitment variability in fish: comparisons between the Laurentian Great Lakes and marine systems

In his seminal work, Hjort (in Fluctuations in the great fisheries of Northern Europe. Conseil Parmanent International Pour L'Exploration De La Mar. Rapports et Proces-Verbaux, 20: 1–228, 1914) observed that fish population levels fluctuated widely, year-class strength was set early in life, and egg production by adults could not alone explain variability in year-class strength. These observations laid the foundation for hypotheses on mechanisms driving recruitment variability in marine systems. More recently, researchers have sought to explain year-class strength of important fish in the Laurentian Great Lakes and some of the hypotheses developed for marine fisheries have been transferred to Great Lakes fish. We conducted a literature review to determine the applicability of marine recruitment hypotheses to Great Lakes fish. We found that temperature, interspecific interactions, and spawner effects (abundance, age, and condition of adults) were the most important factors in explaining recruitment variability in Great Lakes fish, whereas relatively fewer studies identified bottom-up trophodynamic factors or hydrodynamic factors as important. Next, we compared recruitment between Great Lakes and Baltic Sea fish populations and found no statistical difference in factors driving recruitment between the two systems, indicating that recruitment hypotheses may often be transferable between Great Lakes and marine systems. Many recruitment hypotheses developed for marine fish have yet to be applied to Great Lakes fish. We suggest that future research on recruitment in the Great Lakes should focus on forecasting the effects of climate change and invasive species. Further, because the Great Lakes are smaller and more enclosed than marine systems, and have abundant fishery-independent data, they are excellent candidates for future hypothesis testing on recruitment in fish.

Laurentian Great Lakes↗

USGS2020

Advancements towards selective barrier passage by automatic species identification: Applications of deep convolutional neural networks on images of dewatered fish

Invasive species negatively affect enterprises such as fisheries, agriculture, and international trade. In the Laurentian Great Lakes Basin, threats include invasive sea lamprey ( Petromyzon marinus ) and the four major Chinese carps. Barriers have proven to be an effective mechanism for managing invasive species but are detrimental in that they also limit the migration of desirable, native species. Fish passage technologies that selectively pass desirable species while blocking undesirable species are needed. Key to an automated selective barrier passage system is a high precision fish classifier to assign fish to be passed or blocked. Presented is an evaluation of two classifiers developed using images of partially dewatered fish captured from a commercial, high-speed camera array. For a lamprey vs. non-lamprey classification task, an ensemble prediction approach achieved near perfect accuracy on both a validation and test dataset. For a species classification task for 13 species found in the Great Lakes region, an ensemble prediction approach achieved accuracies of 96% and 97% on a validation and test dataset, respectively. Both prediction approaches were based on deep convolutional neural networks constructed using transfer learning and image augmentation. The study provides an important proof-of-concept for the viability in fully automated, selective fish passage systems.

Illinois, Michigan,Ohio↗

USGS2021

Persistent multidecadal variability since the 15th century in the southern Barents Sea derived from annually resolved shell-based records

In the North Atlantic Ocean, multidecadal variability in sea surface temperatures (SSTs) over the past several centuries has largely been inferred through terrestrial proxies and decadally resolved marine proxies. Annually resolved proxy records from marine archives provide valuable insight into this variability, but are especially rare from high latitude environments, particularly for centennial timescales. We constructed continuous, absolutely dated records of shell growth (1449–2014 CE; 564 years) and oxygen isotope ratios (δ 18 O shell ; 1539–2014 CE; 476 years) from shells of the bivalve Arctica islandica from coastal northern Norway, a location sensitive to large-scale North Atlantic Ocean dynamics. An annual (January–December) SST reconstruction derived from δ 18 O shell for the past five centuries suggests an increase of at least 2°C from the mid-18th century to 2014. The SST reconstruction correlates significantly with instrumental records and with other proxy reconstructions in the southern Barents Sea region. Spectral analysis of the shell growth and isotope records supports evidence for Atlantic multidecadal variability (65–80 year periodicity) extending into polar and subpolar latitudes for the past five centuries. These results provide additional evidence that multidecadal variability in SSTs are a persistent feature of the North Atlantic marine system.

Greenland Sea, Iceland Sea, Norwegian Sea, Barents↗

USGS2015

Predictive modelling of habitat use by marine predators with respect to the abundance and depth distribution of pelagic prey

Understanding the ecological processes that underpin species distribution patterns is a fundamental goal in spatial ecology. However, developing predictive models of habitat use is challenging for species that forage in marine environments, as both predators and prey are often highly mobile and difficult to monitor. Consequently, few studies have developed resource selection functions for marine predators based directly on the abundance and distribution of their prey. We analysed contemporaneous data on the diving locations of two seabird species, the shallow-diving Peruvian Booby ( Sula variegata ) and deeper diving Guanay Cormorant ( Phalacrocorax bougainvilliorum ), and the abundance and depth distribution of their main prey, Peruvian anchoveta ( Engraulis ringens ). Based on this unique data set, we developed resource selection functions to test the hypothesis that the probability of seabird diving behaviour at a given location is a function of the relative abundance of prey in the upper water column. For both species, we show that the probability of diving behaviour is mostly explained by the distribution of prey at shallow depths. While the probability of diving behaviour increases sharply with prey abundance at relatively low levels of abundance, support for including abundance in addition to the depth distribution of prey is weak, suggesting that prey abundance was not a major factor determining the location of diving behaviour during the study period. The study thus highlights the importance of the depth distribution of prey for two species of seabird with different diving capabilities. The results complement previous research that points towards the importance of oceanographic processes that enhance the accessibility of prey to seabirds. The implications are that locations where prey is predictably found at accessible depths may be more important for surface foragers, such as seabirds, than locations where prey is predictably abundant. Analysis of the relative importance of abundance and accessibility is essential for the design and evaluation of effective management responses to reduced prey availability for seabirds and other top predators in marine systems.

Gulf of Guinea↗

USGS1982

Modern shallow-water graded sand layers from storm surges, Bering Shelf: a mimic of Bouma sequences and turbidite systems

A sequence of graded sand layers, interbedded with mud, extends offshore over 100 km from the Yukon Delta shoreline across the flat, shallow (<20 m depth) epicontinental shelf of the northern Bering Sea, Alaska. Proximal graded sand beds on the delta-front platform near the shoreline are coarser (2-3phi ), thicker (10 to 20 cm), and contain more complete vertical sequences of sedimentary structures than distal beds. The inshore graded vertical sequence of structures from the base to the top of individual sand layers includes plane-parallel lamination (S b ), cross lamination (S c ), plane-parallel lamination (S d ), and mud (S e ) analogous to the Bouma T (sub a-e) turbidite sequence. Structures vary between interchannel platform deposits with complete S b -S e sequences and channel-floor sands that are all trough cross-laminated. Distally, storm-sand layers change to thin (1 to 5 cm) silt beds that contain flat and ripple-drift lamination (S (sub c-e,de) ), are commonly bioturbated, and are associated with shell and pebble lags from storm-wave reworking. The sequence of graded sands appears to be related to the major storm surges that occur every several years. The major storms increase the average 10-m water depth in southern Norton Sound as much as 5 m and cause fluctuations in pore pressure from wave cyclic loading that may liquefy the upper 2 to 3 m of sediment. Storm-associated bottom currents, possibly dominated by rapidly waning ebb flow, transport the liquefied inshore sand far offshore (> 100 kin). Such shallow-water graded layers off lobate deltas may be distinguished from similar deep-water turbidites by: 1) the predominance of trough cross-lamination, perhaps resulting from wave oscillation effects, in the proximal part of the system, and 2) gradation to common shallow marine fossils, bioturbation, and storm lag layers in distal areas.

Journal of Sedimentary Petrology↗

USGS2019

Comparison of physical to numerical mixing with different tracer advection schemes in estuarine environments

The numerical simulation of estuarine dynamics requires accurate prediction for the transport of tracers such as temperature and salinity. During the simulation of these processes, all numerical models introduce two kinds of tracer mixing: 1) by parameterizing the tracer eddy diffusivity through turbulence models leading to a source of physical mixing and 2) discretization of the tracer advection term that leads to numerical mixing. Both physical and numerical mixing vary with the choice of horizontal advection schemes, grid resolution, and time step. By simulating four idealized cases, this study compares physical and numerical mixing for three different tracer advection schemes. Idealized domains involving only physical and numerical mixing are used to verify the implementation of mixing terms by equating them to total tracer variance. Among the three horizontal advection schemes, the scheme that causes the least numerical mixing while maintaining a sharp front also results in larger physical mixing. Instantaneous spatial comparison of mixing components shows that physical mixing is dominant in regions of large vertical gradients while numerical mixing dominates at sharp fronts that contain large horizontal tracer gradients. In the case of estuaries, numerical mixing may dominate locally over physical mixing; however, the amount of volume integrated numerical mixing through the domain compared to integrated physical mixing remains relatively small for this particular modeling system.

Journal of Marine Science and Engineering↗

USGS2025

An approach to modeling abundance of marine wildlife over space and time using unstructured aerial surveys

Estimating spatial and temporal patterns in abundance is often a goal of ecological studies and can be useful for informing management decisions, such as determining the optimal placement of wildlife protection zones. However, estimating abundance can be difficult in practice, especially over large areas, because of imperfect detection, where individuals are present but not detected because of either availability or observer error. Several methods for estimating abundance that account for imperfect detection exist but can be logistically challenging to implement. We present a simpler approach to some of the more commonly used techniques for estimating the abundance of marine wildlife over space and time from unstructured aerial surveys. This approach combines a spatial model for count data with auxiliary information on detection probability obtained from small-scale or previous studies. We employ generalized linear models and generalized additive models with spatial habitat covariates to illustrate this approach using maximum-likelihood with free, open-source statistical software. This framework is intended to be accessible and flexible, requiring lower survey costs and less computation time than other alternatives for estimating abundance. Indeed, our simulation results show that this approach can reduce computation times, while appropriately characterizing uncertainty, compared to a Bayesian approach. We also present R code for our approach using an example of estimating Florida manatee ( Trichechus manatus latirostris ) abundance in Indian River County in Florida, USA. This approach could be applied to other study systems and marine wildlife species using unstructured aerial surveys.

Florida↗

USGS2020

At Palmyra Atoll, the fish‐community environmental DNA signal changes across habitats but not with tides

At Palmyra Atoll, the environmental DNA (eDNA) signal on tidal sand flats was associated with fish biomass density and captured 98%–100% of the expected species diversity there. Although eDNA spilled over across habitats, species associated with reef habitat contributed more eDNA to reef sites than to sand‐flat sites, and species associated with sand‐flat habitat contributed more eDNA to sand‐flat sites than to reef sites. Tides did not disrupt the sand‐flat habitat signal. At least 25 samples give a coverage >97.5% at this diverse, tropical, marine system.

Journal of Fish Biology↗

USGS2019

Measurement of sounds emitted by certain high-resolution geophysical survey systems

Scientific questions regarding the impact of anthropomorphic noise in the marine environment have resulted in an increasing number of regulatory requirements and precautionary mitigation strategies to reduce the risks associated with high-resolution marine geophysical surveys performed in waters subjected to government jurisdiction. An example of regulatory frameworks includes the Marine Mammal Protection Act in the United States and the Marine Strategy Framework Directive 2008/56/EC in the European Union. Regulatory compliance often requires an assessment of the potential ecological risks before initiating a marine geophysical survey. However, the acoustic source data needed to estimate the risk associated with the operation of a given high-resolution survey system are frequently lacking. A comprehensive measurement program was performed to quantify the characteristics of sounds radiated by a variety of commercial marine geophysical survey systems, including boomers, sparkers, airguns, chirp sub-bottom profilers, sidescan sonars, and swath-bathymetric sonars [Crocker and Fratantonio, “Characteristics of high-frequency sounds emitted during high-resolution marine geophysical surveys,” Naval Undersea Warfare Center, Newport, RI, USA, NUWC-NPT Tech. Rep. 12, 203, 2016]. Calibrated acoustic source data, including source levels, source spectra, and beam patterns, were acquired for a total of 18 different marine geophysical survey systems. The data support modeling to estimate the potential ecological impacts resulting from the operation of certain high-resolution marine geophysical survey systems.

IEEE Journal of Oceanic Engineering↗

USGS1998

Ecological relationship between freshwater sculpins (Genus cottus) and beach-spawning sockeye salmon (Oncorhynchus nerka) in Iliamna Lake, Alaska

The interaction between two sculpin species, Cottus cognatus and Cottus aleuticus, and island beach spawning sockeye salmon (Oncorhynchus nerka) was examined in Iliamna Lake, Alaska. We conclude that sculpins actively move to specific spawning beaches and that the initiation of their movements precedes the start of spawning. Sculpin predation on sockeye eggs is positively dependent on sculpin size and on the state of the eggs (fresh versus water hardened), with the largest sculpins able to consume nearly 50 fresh eggs at a single feeding and 130 over a 7-day period. The number of sculpins in sockeye nests is greatest at the beginning of the spawning run, lowest in the middle, and high again at the end, with peak numbers of over 100 sculpins per nest (1 m2). We discuss the results in terms of energy flow of marine-derived nutrients into an oligotrophic system and in terms of the coevolution of sockeye spawning behavior and the predatory behavior of sculpins.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS1973

Soda Creek springs - metamorphic waters in the eastern Alaska Range

The Soda Creek springs are a group of small, cold mineral springs on the southern flank of the eastern Alaska Range. The spring waters contain anomalous concentrations of carbon dioxide, sodium, chlorine, sulfate, boron, and ammonia and are actively precipitating deposits of calcite and aragonite. Sparingly present in these deposits are mixed-layer illite-montmorillonite clays and zeolite minerals. Low-temperature metamorphic reactions in subjacent marine sedimentary rocks of Jurassic and Cretaceous age may have produced the fluids and silicate minerals. With only a few exceptions, cool bicarbonate-rich springs in Alaska are concentrated south of the Denali fault system in south-central Alaska, southeastern Alaska, and along the Kaltag-Tintina fault system. These areas are characterized by active or recently active tectonism, major faults and folds, and an abundance of marine sedimentary rocks.

Alaska↗

USGS2002

Salt deposits in Arizona promise gas-storage opportunities

Massive salt formations and their proximity to pipeline systems and power plants make Arizona attractive for natural gas storage. Caverns dissolved in subsurface salt are used to store LPG at Ferrellgas Partners LP facility near Holbrook and the AmeriGas Partners LP facility near Glendale. Three other companies are investigating the feasibility of storing natural gas in Arizona salt: Copper Eagle Gas Storage LLC, Desert Crossing Gas Storage and Transportation System LLC, and Aquila Inc. The most extensive salt deposits are in the Colorado Plateau Province. Marine and nonmarine salt deposits are present in Arizona.

Arizona↗

USGS2024

Characterization of the structural–stratigraphic and reservoir controls on the occurrence of gas hydrates in the Eileen Gas Hydrate Trend, Alaska North Slope

One of the most studied permafrost-associated gas hydrate accumulations in Arctic Alaska is the Eileen Gas Hydrate Trend. This study provides a detailed re-examination of the Eileen Gas Hydrate Trend with a focus on the gas hydrate accumulation in the western part of the Prudhoe Bay Unit. This integrated analysis of downhole well log data and published geophysical data has provided new insight on structural, stratigraphic, and reservoir controls on the occurrence of gas hydrates in the Eileen Gas Hydrate Trend. This study revealed the relatively complex nature of the gas hydrate occurrences in the Eileen Gas Hydrate Trend, with gas hydrates present in a series of coarsening upward, laterally pervasive, mostly fine-grained sand beds exhibiting high gas hydrate saturations. Most of the gas hydrate-bearing reservoirs in the Eileen Gas Hydrate Trend are laterally segmented into distinct northwest- to southeast-trending fault blocks, occur in a combination of structural–stratigraphic traps, and are only partially hydrate filled with distinct down-dip water contacts. These findings suggest that the traditional parts of a petroleum system (i.e., reservoir, gas source, gas migration, and geologic timing of the system formation) also control the occurrence of gas hydrates in the Eileen Gas Hydrate Trend.

Alaska↗

USGS2023

Broadening the perspectives of sedimentary organic matter analysis to understand Earth system response to change

This paper broadens the description of sedimentary organic matter from the conventional use of coal petrography to include palynological and geochemical sedimentary organic matter. Palynological sedimentary organic matter includes all chemically resistant organic microfossils, such as pollen and spores, dinocysts, microforaminifera (chitinoid-like linings of foraminifera), microscopic algae, charcoal, palynodebris, acritarchs, chitinozoans, and scolecodonts. Geochemical sedimentary organic matter includes organic biomarkers, lipids, and photosynthetic pigments. We provide examples of the use of palynological and geochemical analysis of sedimentary organic matter to understand patterns and impacts of changing climate, fire regimes, hydrologic extremes, water quality, and land change on terrestrial and marine systems through geologic time to provide a long-term perspective to evaluate anthropogenic impacts on the Earth as well as to support forensics investigations.

International Journal of Coal Geology↗

USGS2018

Infection by Nanophyetus salmincola and toxic contaminant exposure in out‐migrating steelhead from Puget Sound, Washington: Implications for early marine survival

Out‐migrating steelhead Oncorhynchus mykiss from four Puget Sound rivers and associated marine basins of Puget Sound in Washington State were examined for the parasite, Nanophyetus salmincola in 2014 to determine whether recent trends in reduced marine survival are associated with the presence of this pathogen. A subset of steelhead from three of these river–marine basin combinations was analyzed for the presence of persistent organic pollutants (POPs) to assess whether exposure to these contaminants is a contributing factor to their reduced marine survival. The prevalence and parasite load of N. salmincola were significantly higher in fish from central and southern Puget Sound than in fish from river systems in northern Puget Sound. The proportion of steelhead samples with concentrations of POPs higher than adverse effects thresholds (AETs) or concentrations known to cause adverse effects was also greater in fish from the central and southern regions of Puget Sound than in those from the northern region. Polybrominated diphenyl ether concentrations associated with increased disease susceptibility were observed in 10% and 40% of the steelhead sampled from central and southern Puget Sound regions, respectively, but in none of the fish sampled from the northern region. The AET for polychlorinated biphenyls was exceeded in steelhead collected from marine habitats: 25% of the samples from the marine basins in the central and southern regions of Puget Sound and 17% of samples from northern Puget Sound region. Both N. salmincola and POP levels suggest there are adverse health effects on out‐migrating steelhead from one southern and one central Puget Sound river that have lower early marine survival than those from a river system in northern Puget Sound.

Washington↗

USGS2019

India National Gas Hydrate Program Expedition 02 Summary of Scientific Results: Gas hydrate systems along the eastern continental margin of India

The primary objectives of the India National Gas Hydrate Program Expedition 02 (NGHP-02) were to obtain new data on the occurrence of gas hydrate systems and to advance the understanding of the controls on the formation of gas hydrate accumulations in the offshore of India. In accordance with the ultimate overall goal of the NGHP effort to assess the energy resource potential of marine gas hydrates in India, particular focus was placed on the exploration and evaluation of gas hydrate occurrences at high saturations in sand-rich systems. NGHP-02 operations were conducted from 3-March-2015 to 28-July-2015 off the eastern coast of India and included logging while drilling (LWD) operations at 25 locations, and coring and wireline logging operations at 10 locations, in the Krishna-Godavari and Mahanadi Basins. The formation of highly concentrated gas hydrate accumulations, which are more suitable for energy extraction, requires the presence of relatively coarse-grained sediments with porosity needed to support the migration and accumulation of gas, and the nucleation of gas hydrate. The results of downhole logging, coring and formation pressure testing operations during NGHP-02 have confirmed the presence of extensive sand-rich depositional systems throughout the deepwater portions of the Krishna-Godavari and Mahanadi Basins. Two areas of Krishna-Godavari Basin, referred to as Areas B and C, contain substantial gas hydrate accumulations in sand-rich systems and therefore represent ideal candidate sites for future gas hydrate production testing. This summary and technical report includes a comprehensive synthesis of the geologic, geophysical, geochemical, and physical property data acquired during NGHP-02 as it relates to the controls on gas hydrate occurrence, particularly with regards to sand-hosted accumulations. In the Mahanadi Basin, despite the confirmation of extensive reservoir capacity, gas supply at the NGHP-02 sites was insufficient to charge the reservoirs with gas hydrates. In the Krishna-Godavari Basin, extensive reservoir systems were confirmed with sediment grain-sizes ranging from coarse-silts to gravels. These reservoirs range from fully- to partially filled with gas hydrate. The gas is determined to be from only microbial sources, and in part migrated into the reservoirs from deeper systems. The controls on gas hydrate occurrence are complex and varied; and include substantial reservoir heterogeneity and sufficient permeability throughout the reservoirs and seals that allowed pervasive fluid flow into and through the hydrate-bearing systems. These discoveries are the most significant confirmation of the exploration approach that focuses on direct detection of hydrate reservoirs supported by comprehensive petroleum systems analyses.

Journal of Marine and Petroleum Geology↗

USGS1975

Phallodrilus hallae, a new tubificid oligochaete from the St. Lawrence Great Lakes

The predominantly marine tubificid genus Phallodrilus is defined, a key to its nine species constructed, and an illustrated description of Phallodrilus hallae n. sp. from the St. Lawrence Great Lakes presented. The species is distinguished from other members of the genus by its well-developed atrial musculature, extensions of which ensheath the posterior prostatic ducts. Phallodrilus hallae n. sp. is a small worm which is widely distributed in the sublittoral and profundal benthos of Lake Superior; lakewide it occurred in mean densities of 50 individuals per square metre. Available records indicate a more restricted distribution in Lake Huron and Georgian Bay. We suggest that P . hallae n. sp. is either a glaciomarine relict species, or that it entered the Great Lakes system at the time of the marine transgression of the St. Lawrence valley. The apparent restriction of P . hallae n. sp. to waters of high quality suggests that it may be a sensitive oligotrophic indicator species.

Canadian Journal of Zoology↗

USGS2019

National Gas Hydrate Program expedition 02: Identification of gas hydrate prospects in the Krishna-Godavari Basin, offshore India

After completing the first expedition of India's National Gas Hydrate Program (NGHP-01) in 2006, it was concluded that for the next expedition (National Gas Hydrate Program 02; NGHP-02), a new drill site review effort should focus on identifying potential deep-water offshore gas hydrate accumulations in sand dominated depositional environments. Therefore, geological and geophysical data analysis and 3D seismic data interpretation along with associated seismic modeling were carried out in three areas of the Krishna-Godavari Basin: Areas B, C, and E. Conventional petroleum exploration approaches of seismic amplitude evaluation were adapted to prospect for potential sand-rich depositional systems within the gas hydrate stability zone. Subsequently, these prospective areas were further assessed through the geological and geophysical evaluation of depositional setting, gas sources, and gas migration pathways. In Area B, prospecting focused on a large anticlinal structure with a prominent bottom-simulating reflector and several key horizons that indicated evidence for potential sand-hosted hydrate occurrences. In Area C, the prospects were distributed throughout various settings within a very large deep-water channel-levee-fan system with complex indications of potential gas hydrate occurrence in sand-prone seismic facies. In Area E, prospects were associated with high amplitude events within inferred channel-levee sequences. Based on the pre-expedition/onboard drill-site evaluation, the 22 most promising sites in the Krishna-Godavari Basin were identified and prioritized to investigate and delineate a total of 17 identified gas hydrate prospects. This paper describes the geo-scientific studies carried out prior to NGHP-02 for site identification, evaluation and prioritization. An important outcome of this study is the identification of two potentially producible gas hydrate systems inferred to host significant quantity of gas hydrate in stratigraphic-structural traps.

Journal of Marine and Petroleum Geology↗