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Unveiling a legacy of fish introductions to mountain lakes using historical records and eDNA surveys in a National Park

Across the western United States, introductions of non-native fish into historically fishless mountain lakes have impacted native biota. Understanding the impacts of fish introductions is essential for conservation in Olympic National Park, a Biosphere Reserve. We reconstructed fish plantings using records dating back to 1930, followed by environmental DNA (eDNA) surveys to estimate the current distribution of fish and amphibians in 117 remote mountain lakes. We used Bayesian multiscale occupancy models to determine how lake attributes and planting history related to fish and amphibian occupancy. The most frequently detected species were Brook Trout, Rainbow Trout, Cascades Frog, and Northwestern Salamander. eDNA sampling revealed 52 lakes with amphibians only, 45 with fish and amphibians, 14 with fish only, and 6 unoccupied. Of the 53 lakes with planting records, 38 had fish eDNA detected. Fish eDNA was also detected in 21 lakes lacking planting records, which could reflect incomplete records, unauthorized plantings, and false positive detections. Of the three species planted, Cutthroat Trout had the highest failure rate and did not become established in 23 of 28 historically planted lakes. In a subset of 9 lakes sampled for up to 7 years, those with known fish and amphibian presence showed consistent eDNA detections over time. The number of times a lake was stocked was the best predictor of occupancy for Brook and Rainbow trout, while higher occupancy for Brook Trout was also associated with lower elevations, lower solar radiation, and larger lake area. We did not observe widespread negative associations between amphibian occupancy and fish presence, although there was a negative relationship between fish presence and Rough-skinned Newt and Long-toed Salamander occupancy. Cascades Frog occupancy showed no relationship to fish presence or lake traits. Our results suggest mechanisms of fish persistence over time and highlight areas where native amphibians are impacted by introduced fish. These results can guide management options like targeted fish removals that benefit native fauna while still supporting recreational fishing. More broadly, our work demonstrates the value of combining historical records with contemporary surveys and the utility of eDNA for broad-scale surveys of species distribution in remote wilderness areas.

Washington

Evaluating contributions of recent tracking-based animal movement ecology to conservation management

The use of animal-born sensors for location-based tracking and bio-logging in terrestrial systems has expanded dramatically in the past 10 years. This rapid expansion has generated new data on how animals interact with and respond to variation in their environment, resulting in important ecological, physiological, and evolutionary insights. Although understanding the finer details of animal locations has important management relevance, applied studies are not prominent in the movement ecology literature. This is despite the long history of applied studies of animal movement and the urgent and growing need for evidence-based conservation guidance, especially in the challenging field of human-wildlife interactions. The goal of this review is to evaluate the realized contribution of tracking-based animal movement ecology to solving specific conservation problems, and to identify barriers that may hinder expansion of that contribution. To do this, we (a) briefly review the history and technologies used in animal tracking and bio-logging, (b) use a series of literature searches to evaluate the frequency with which movement ecology studies are designed to solve specific conservation problems, and (c) use this information to identify challenges that may limit the applied relevance of the field of movement ecology, and to propose pathways to expand that applied relevance. Our literature review quantifies the limited extent to which research in the field of movement ecology is designed to solve specific conservation problems, but also the fact that such studies are slowly becoming more prevalent. We discuss how barriers that limit application of these principles are likely due to constraints imposed by the types of data used commonly in the field. Problems of scale mismatch, error compounding, and data paucity all create challenges that are relevant to the field of movement ecology but may be especially pertinent in applied situations. Finding solutions to these problems will create new opportunity for movement ecologists to contribute to conservation science.

Frontiers in Ecology and Evolution

Facing our freshwater crisis via fluid and agile communication: A grand challenge

Earth has been labeled the blue planet because of its abundance of water that covers most of its surface, but the majority is salt water in our oceans. Oceans account for ~352 million km 2 or 69% of the planet's surface, land for 150 million km 2 or 29%, and fresh water for 9 million km 2 or 2% ( Shiklomanov, 2000 ). Most of the fresh water is locked away in glaciers and ice sheets on Greenland and Antarctica, with less than a third accessible to biota ( Shiklomanov, 2000 ). This miniscule fraction of fresh water is our most precious natural resource, the foundation for life in terrestrial environments, and humanity depends on it, but the resource faces enormous threats. My aim in this brief editorial is to define the freshwater resource, succinctly summarize the major threats it faces, and underscore recent calls for conservation. My review is cursory, but I call attention to various recent exhaustive reviews. I end with my views on how journals can help advance global freshwater conservation efforts.

Frontiers in Freshwater Science

Linking evolutionary potential to extinction risk: Applications and future directions

Extinction-risk assessments play a major role in prioritizing conservation action at national and international levels. However, quantifying extinction risk is challenging, especially when including the full suite of adaptive responses to environmental change. In particular, evolutionary potential (EP), the capacity to evolve genetically based changes that increase fitness under changing conditions, has proven difficult to evaluate, limiting its inclusion in risk assessments. Theory, experiments, simulations, and field studies all highlight the importance of EP in characterizing and mitigating extinction risk. Disregarding EP can therefore result in ineffective allocation of resources and inadequate recovery planning. Fortunately, proxies for EP can be estimated from environmental, phenotypic, and genetic data. Some proxies can be incorporated into quantitative extinction-risk assessments, whereas others better inform basic conservation actions that maximize resilience to future change. Integration of EP into conservation decision-making is challenging but essential and remains an important area for innovation in applied conservation science.

Frontiers in Ecology and the Environment

The benefits of big-team science for conservation: Lessons learned from trinational monarch butterfly collaborations

Many pressing conservation issues are complex problems caused by multiple social and environmental drivers; their resolution is aided by interdisciplinary teams of scientists, decision makers, and stakeholders working together. In these situations, how do we generate science to effectively guide conservation (resource management and policy) decisions? This paper describes elements of successful big-team science in conservation, as well as shortcomings and lessons learned, based on our work with the monarch butterfly ( Danaus plexippus ) in North America. We summarize literature on effective science teams, extracting information about elements of success, effective implementation approaches, and barriers or pitfalls. We then describe recent and ongoing conservation science for the monarch butterfly in North America. We focus primarily on the activities of the Monarch Conservation Science Partnership–an international collaboration of interdisciplinary scientists, policy experts and natural resource managers spanning government, non-governmental and academic institutions—which developed science to inform imperilment status, recovery options, and monitoring strategies. We couch these science efforts in the adaptative management framework of Strategic Habitat Conservation, the business model for conservation employed by the US Fish and Wildlife Service to inform decision-making needs identified by stakeholders from Canada, the United States, and Mexico. We conclude with elements critical to effective big-team conservation science, discuss why science teams focused on applied conservation problems are unique relative to science teams focusing on traditional or theoretical research, and list benefits of big team science in conservation.

Frontiers in Environmental Science

Invasive carps versus native fish: A first-pass trait-based index for assessing competition threats.

Introduction: Bigheaded carp ( Hypophthalmichthys spp.) are invasive fish in the Mississippi River basin. Their rapid proliferation has raised concerns about exploitative competition with native fishes, with consequences that remain incompletely understood. We aimed to identify native species most susceptible to competition based on overlap with bigheaded carp in dietary and habitat traits. Methods: We used an established fish traits database to quantify dietary and habitat overlap between bigheaded carp and 100 native fish species. We then integrated dietary and habitat overlap into a composite competition index. Results: Dietary similarity with the native assemblage exceeded habitat similarity, suggesting that while competition with some native species may occur, it may often be limited by spatial separation. Dietary and habitat similarity coefficients were not correlated, indicating that strong dietary overlap did not necessarily coincide with similar habitat use (and vice versa). Approximately 20% of species were classified as high competition risk. The highest-risk species included bigmouth buffalo ( Ictiobus cyprinellus ), threadfin shad ( Dorosoma petenense ), black redhorse ( Moxostoma duquesnii ), bluntnose minnow ( Pimephales notatus ), highfin carpsucker ( Carpiodes velifer ), and gizzard shad ( Dorosoma cepedianum ). Discussion: Although trait-based predictions have limitations, our results are consistent with empirically documented interactions and provide a rapid, first-pass assessment of potential competitive vulnerability. Dietary overlap, habitat overlap, and the derived competition index offer actionable decision-support for managing potential competition between bigheaded carp and native species. We included ten practical recommendations to translate predictions into conservation and management actions.

Alabama, Kentucky, Mississippi, North Carolina, So

Coral reef restorations can be optimized to reduce coastal flooding hazards

Coral reefs are effective natural coastal flood barriers that protect adjacent communities. Coral degradation compromises the coastal protection value of reefs while also reducing their other ecosystem services, making them a target for restoration. Here we provide a physics-based evaluation of how coral restoration can reduce coastal flooding for various types of reefs. Wave-driven flooding reduction is greatest for broader, shallower restorations on the upper fore reef and between the middle of the reef flat and the shoreline than for deeper locations on the fore reef or at the reef crest. These results indicate that to increase the coastal hazard risk reduction potential of reef restoration, more physically robust species of coral need to be outplanted to shallower, more energetic locations than more fragile, faster-growing species primarily being grown in coral nurseries. The optimization and quantification of coral reef restoration efforts to reduce coastal flooding may open hazard risk reduction funding for conservation purposes.

Frontiers in Marine Science

Principles of translational science education

In a recent special issue in Frontiers in Ecology and the Environment, Enquist et al. (2017) present a welcome streamlining of modern applied ecology emphasizing a collaborative approach to applied ecological research involving resource-managers and scientists to produce actionable science: translational ecology (TE). The authors, including ecologists, social scientists, and conservation professionals, identified six principles defining the practice of translational ecology: collaboration, engagement, commitment, communication, process, and framing (Figure 1). In thinking about how science education can be enhanced by directly involving researchers in science education, we recognized remarkable overlap between the principles of translational ecology (Enquist et al. 2017) and a framework for developing mutually beneficial integrative partnerships between scientists and educators. Here, we describe scientist-educator analogies of the six principles of translational ecology: translational science education (TSE).

Frontiers in Ecology and Evolution

Novel insights into the genetic population connectivity of transient whale sharks (Rhincodon typus) in Pacific Panama provide crucial data for conservation efforts

The whale shark ( Rhincodon typus ) is an endangered and highly migratory species, of which solitary individuals or aggregations are observed in oceans worldwide and for which conservation efforts are hindered by a lack of comprehensive data on genetic population connectivity. Tissue samples were collected from wandering whale sharks in Pacific Panama to determine genetic diversity, phylogeographic origin, and possible global and local connectivity patterns using a 700–800 bp fragment of the mitochondrial control region gene. Genetic diversity among samples was high, with five new haplotypes and nine polymorphic sites identified among the 15 sequences. Haplotype diversity ( H d = 0.83) and nucleotide diversity (π = 0.00516) were similar to those reported in other studies. Our sequences, in particular haplotypes PTY1 and PTY2 , were similar to those previously reported in the Arabian Gulf and the Western Indian Ocean populations (a novel occurrence in the latter case). Haplotypes PTY3 , PTY4 , and PTY5 were similar to populations in Mexico and the Gulf of California. In contrast, the only populations to which our Panamanian sequences were genetically dissimilar were those from the Atlantic Ocean. The absence of reference sequences in GenBank from southern sites in the Eastern Tropical Pacific, such as Galapagos (Ecuador), Gorgona and Malpelo Islands (Colombia), and Coco Island (Costa Rica), reduced our capacity to genetically define regional patterns. Genetic differentiation and connectivity were also assessed using an analysis of molecular variance (AMOVA), which showed a similar population structure (five groups) to the neighbor-joining tree. Other population features based on neutrality tests, such as Tajima’s D and Fu’s Fs statistics, showed positive values for Panama of 0.79 and 1.61, respectively. Positive values of these statistics indicate a lack of evidence for population expansion among the sampled individuals. Our results agree with previous reports suggesting that whale sharks can travel over long distances and that transboundary conservation measures may be effective for species protection.

Gulf of Chiriqu

Modeling fine-scale coral larval dispersal and interisland connectivity to help designate mutually-supporting coral reef marine protected areas: Insights from Maui Nui, Hawaii

Connectivity among individual marine protected areas (MPAs) is one of the most important considerations in the design of integrated MPA networks. To provide such information for managers in Hawaii, USA, a numerical circulation model was developed to determine the role of ocean currents in transporting coral larvae from natal reefs throughout the high volcanic islands of the Maui Nui island complex in the southeastern Hawaiian Archipelago. Spatially- and temporally-varying wind, wave, and circulation model outputs were used to drive a km-scale, 3-dimensional, physics-based circulation model for Maui Nui. The model was calibrated and validated using satellite-tracked ocean surface current drifters deployed during coral-spawning conditions, then used to simulate the movement of the larvae of the dominant reef-building coral, Porites compressa , from 17 reefs during eight spawning events in 2010–2013. These simulations make it possible to investigate not only the general dispersal patterns from individual coral reefs, but also how anomalous conditions during individual spawning events can result in large deviations from those general patterns. These data also help identify those reefs that are dominated by self-seeding and those where self-seeding is limited to determine their relative susceptibility to stressors and potential roadblocks to recovery. Overall, the numerical model results indicate that many of the coral reefs in Maui Nui seed reefs on adjacent islands, demonstrating the interconnected nature of the coral reefs in Maui Nui and providing a key component of the scientific underpinning essential for the design of a mutually supportive network of MPAs to enhance conservation of coral reefs.

Hawaii

Marine threats overlap key foraging habitat for two imperiled sea turtle species in the Gulf of Mexico

Effective management of human activities affecting listed species requires understanding both threats and animal habitat-use patterns. However, the extent of spatial overlap between high-use foraging areas (where multiple marine species congregate) and anthropogenic threats is not well known. Our modeling approach incorporates data on sea turtle spatial ecology and a suite of threats in the Gulf of Mexico to identify and map “hot spots” of threats to two imperiled turtle species. Of all 820 “high” threats grid cells, our tracked turtles foraged at least one day in 77% of them. Although threat data were not available outside the U.S. Exclusive Economic Zone, our map of turtle and threat “hotspots” can be incorporated in future more comprehensive threat analyses for the region. Knowledge of these shared foraging- and threat-areas can assist managers charged with designing effective conservation and population recovery strategies, in future habitat modeling efforts, and in designations of Gulf of Mexico habitat with high conservation value.

Frontiers in Marine Science

Mapping global coral vulnerability to stony coral tissue loss disease: Implications for biosecurity and conservation

Stony Coral Tissue Loss Disease (SCTLD) has devastated Caribbean coral reefs since 2014, but its potential for global impact remains uncertain. We developed predictive models to assess the worldwide vulnerability of coral reefs to SCTLD under different origin and spread hypotheses. Using random forest regression models incorporating coral taxonomy and zooxanthellae clade associations from 52 taxa, we projected SCTLD susceptibility and mortality patterns globally using six indices: Mean susceptibility per genus per location, Summed susceptibilities across genera per location, Summed susceptibilities across genera per realm, Mean mortality per genus per location, Summed mortalities across genera per location, and Summed mortalities across genera per realm. Models demonstrated strong predictive performance (R² = 0.57 for susceptibility; R² = 0.73 for mortality) and revealed that about 7% of coral genera per location are potentially susceptible to SCTLD. While mean susceptibility and mortality per genus were highest in the Tropical Atlantic, the summed susceptibility and mortality across genera were much higher in the biodiverse Central Indo-Pacific. Natural barriers could limit SCTLD’s spread, including the mid-Atlantic gap and the low diversity of the Tropical Eastern Pacific, supporting the contained disease hypothesis. However, the widespread distribution of susceptible genera across coral reef realms indicates significant vulnerability should SCTLD circumvent these barriers through human-mediated transport, particularly via ballast water or the aquarium trade. If SCTLD is an invasive pathogen originating in the Pacific, as shipping patterns for the aquarium trade suggest, mortality in its native range would likely be lower than our projections. These findings point to targeted intervention strategies, including enhanced monitoring at key locations, assessment of biosecurity needs in high-risk areas, and prioritized conservation efforts in vulnerable high-diversity regions to prevent SCTLD from spreading globally.

Frontiers in Marine Science

Long-term patterns in growth of White Sturgeon in the Sacramento-San Joaquin River basin, California.

Introduction: The Sacramento-San Joaquin River system (SSJ) of California includes both riverine, delta, and estuarine habitats and is among the most modified aquatic ecosystems in the United States. Water development projects in the system are associated with declines of many native species, including White Sturgeon Acipenser transmontanus . Methods: We used White Sturgeon pectoral fin rays collected from 1983 to 2016 throughout the SSJ to assess long-term changes in growth and associations with thermal and hydrological conditions (i.e., temperature, discharge, salinity). Age and growth were estimated from 1,897 White Sturgeon varying in fork length from 25 to 210 cm and from age 0 to 33. Results: Age structure varied through time with the oldest fish generally sampled during the mid-1980s. Growth of White Sturgeon in 1951–1970 was slower than growth of fish in 1971–1990 and 1991–2012. Growth of White Sturgeon during 1991–2012 was ~10% higher than during other time periods. Discussion: Little variation in growth was explained by environmental covariates, suggesting that annual growth was likely influenced by factors not measured in our study. Alternatively, population structure and movement behavior of White Sturgeon in the SSJ may be such that the scale (i.e., spatial or temporal) of available habitat covariates was mismatched to the scale at which growth of White Sturgeon responds. Increased growth in recent times may be partly due to density-dependent processes in association with substantial declines in White Sturgeon population abundance over the last several decades. This research provides important information on long-term patterns in growth that contributes to the conservation and management of White Sturgeon in the SSJ and beyond.

California

Can identifying discrete behavioral groups with individual-based acoustic telemetry advance the understanding of fish distribution patterns?

Identifying patterns of organismal distribution can provide valuable insights for basic and applied marine and coastal ecology because understanding where animals are located is foundational to both research and science-based conservation. Understanding variation in distributional patterns can lead to a better assessment of ecological drivers and an improved ability to predict consequences of natural and altered relationships. Here, our purpose is to explore if quantifying coexisting groups of individual fish predators advances our understanding of field distribution patterns. Toward this end, we quantified locations of 59 acoustically tagged striped bass ( Morone saxatilis) within a 26-stationary unit telemetry receiver array in Plum Island Estuary (PIE), MA, United States. We then used cluster analyses on spatial and temporal-spatial metrics from this dataset to (1) assess if distinct groups of individuals coexisted, (2) quantify group characteristics, and (3) test associations between groups and distribution (e.g., physical site type and region). Based on multiple lines of evidence, we identified four groups of striped bass with different space use patterns that persisted across seasons (summer and fall). Similar-sized striped bass clustered at spatial and temporal scales at which individuals within distinct groups could, and did, physically overlap. In addition, distributional groups were linked to components of physical site type and region suggesting that discrete groups of individuals can interact differently with the environment within the same ecological system. The identification of these distinct groups of individuals creates a baseline from which to explore further ecological implications of grouping behavior for research and conservation in geographically large, temporally dynamic, and spatially heterogeneous marine and coastal environments.

Massachusetts

Land-based nutrient flux to a fringing reef: Insights from Ofu Island, American Samoa

Submarine groundwater discharge (SGD) is a critical driver of nutrient transport in coral reef ecosystems, shaping water quality, primary productivity, and overall reef health. This study quantifies SGD fluxes and associated nutrient dynamics in two reef flat pools within the Ofu Unit of the National Park of American Samoa: Papaloloa and Fatuana. A multi-method approach integrating unoccupied aerial system-based thermal infrared (UAS-TIR) surveys, radon-based SGD measurements, multichannel electrical resistivity tomography (ERT), and discrete water sampling was used to assess SGD rates and nutrient contributions. UAS-TIR imagery revealed cooler sea surface temperatures in both pools, indicative of SGD, with the higher fluxes observed in Papaloloa. Radon measurements revealed a strong inverse correlation between SGD rates and tidal stage, with a more immediate SGD response at Papaloloa due to its highly permeable calcareous sand and gravel substrate. In contrast, a 2–3-hour lag in SGD response at Fatuana suggests discharge from a more inland aquifer that has lower diffusivity. Nutrient concentrations correlated with temperature and salinity, confirming SGD as the dominant nutrient transport mechanism, whereas isotopic analyses indicated inputs from both groundwater and potential anthropogenic sources. Despite lower SGD flux at Fatuana, higher algal cover suggests additional factors influencing algal proliferation, including substrate availability and hydrodynamic conditions. Excess nutrient inputs from SGD may contribute to algal overgrowth, which threatens Ofu’s thermally tolerant corals by increasing competition for space and light. These findings underscore the complexity of SGD-mediated nutrient dynamics in reef environments and emphasize the need for integrated hydrological and ecological assessments to support effective reef conservation and management strategies.

American Samoa, Ofu Island, Olosega Island

Citizen science data collection for integrated wildlife population analyses

Citizen science, or community science, has emerged as a cost-efficient method to collect data for wildlife monitoring. To inform research and conservation, citizen science sampling designs should collect data that match the robust statistical analyses needed to quantify species and population patterns. Further increasing the contributions of citizen science, integrating citizen science data with other datasets and datatypes can improve population estimates and expand the spatiotemporal extent of inference. We demonstrate these points with a citizen science program called iSeeMammals developed in New York state in 2017 to supplement costly systematic spatial capture-recapture sampling by collecting opportunistic data from one-off observations, hikes, and camera traps. iSeeMammals has initially focused on the growing population of American black bear ( Ursus americanus ), with integrated analysis of iSeeMammals camera trap data with systematic data for a region with a growing bear population. The triumvirate of increased spatial and temporal coverage by at least twofold compared to systematic sampling, an 83% reduction in annual sampling costs, and improved density estimates when integrated with systematic data highlight the benefits of collecting presence-absence data in citizen science programs for estimating population patterns. Additional opportunities will come from applying presence-only data, which are oftentimes more prevalent than presence-absence data, to integrated models. Patterns in data submission and filtering also emphasize the importance of iteratively evaluating patterns in engagement, usability, and accessibility, especially focusing on younger adult and teenage demographics, to improve data quality and quantity. We explore how the development and use of integrated models may be paired with citizen science project design in order to facilitate repeated use of datasets in standalone and integrated analyses for supporting wildlife monitoring and informing conservation.

Frontiers in Ecology and Evolution