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Factors influencing densities of non-indigenous species in the ballast water of ships arriving at ports in Puget Sound, Washington, United States

Oceanographic characteristics and the presence of international shipping in Puget Sound, Washington, USA contribute to its vulnerability to non-indigenous species (NIS) invasions. To evaluate NIS arriving in ballast water, zooplankton was sampled in 380 ballast tanks of ships after they entered Puget Sound. Taxa were classified into a higher risk group of coastal organisms (including known NIS), and a lower risk group of largely oceanic species. Most ships reported conducting mid-ocean ballast water exchange (BWE). However, despite state regulations requiring BWE, and apparent compliance by ship operators, most sampled tanks from both transpacific and coastal routes had coastal zooplankton densities exceeding internationally proposed discharge standards. BWE efficiency models and controlled before-and-after BWE experiments indicate that BWE consistently removes most coastal zooplankton. However, this study found that although the empty-refill method of BWE significantly reduced coastal plankton compared with un-exchanged tanks, the flow-through method did not, and in either case remaining coastal plankton densities presented appreciable risks of introducing NIS. Densities of high risk taxa were consistently and significantly higher from US domestic trips dominated by tank ships carrying ballast water from California, and lower in samples from trans-Pacific trips dominated by container ships and bulk carriers with ballast from Asia. These findings are probably a result of the dense and diverse NIS assemblages present in California and other US west coast estuaries and the comparatively short transit times between them and Puget Sound. While it appears that BWE can effectively replace NIS with less risky ocean species, new reporting, verification, and operational procedures may be necessary to enhance BWE efficacy. In the long-term, the introduction of ballast water treatment technologies may be required to significantly reduce the discharge of risky organisms from commercial ships if BWE practices do not become more effective. Copyright ?? 2008 John Wiley & Sons, Ltd.

Aquatic Conservation: Marine and Freshwater Ecosys

Estuarine sediment transport by gravity-driven movement of the nepheloid layer, Long Island Sound

Interpretation of sidescan-sonar imagery provides evidence that down-slope gravity-driven movement of the nepheloid layer constitutes an important mode of transporting sediment into the basins of north-central Long Island Sound, a major US East Coast estuary. In the Western Basin, this transport mechanism has formed dendritic drainage systems characterized by branching patterns of low backscatter on the seafloor that exceed 7.4 km in length and progressively widen down-slope, reaching widths of over 0.6 km at their southern distal ends. Although much smaller, dendritic patterns of similar morphology are also present in the northwestern part of the Central Basin. Because many contaminants display affinities for adsorption onto fine-grained sediments, and because the Sound is affected by seasonal hypoxia, mechanisms and dispersal pathways by which inorganic and organic sediments are remobilized and transported impact the eventual fate of the contaminants and environmental health of the estuary.

Connecticut, Massachussetts, New York

Sidescan sonar imagery and surficial geologic interpretation of the sea floor off Branford, Connecticut

The U.S. Geological Survey (USGS), in cooperation with the National Oceanic and Atmospheric Administration (NOAA) and the Connecticut Department of Environmental Protection (CT DEP), Figure 1 - Map of Study Areahas produced detailed geologic maps of the sea floor in Long Island Sound, a major East Coast estuary surrounded by the most densely populated region of the United States. These studies have built upon cooperative research between the USGS and the State of Connecticut that was initiated in 1982. The current phase of this research program is directed toward studies of sea-floor sediment distribution, processes that control sediment distribution, nearshore environmental concerns, and the relation of benthic community structures to the sea-floor geology. Anthropogenic wastes, toxic chemicals, and changes in land-use patterns resulting from residential, commercial, and recreational development have stressed the environment of the Sound, causing degradation and potential loss of benthic habitats (Koppelman and others, 1976; Long Island Sound Study, 1994). Detailed maps of the sea floor are needed to help evaluate the extent of adverse impacts and to help wisely manage resources in the future. Therefore, in a continuing effort to better understand Long Island Sound, we are constructing and interpreting sidescan sonar mosaics (complete-coverage acoustic images of the sea floor) within specific areas of special interest (Poppe and Polloni, 1998). The mosaic presented herein, which was produced during survey H11043 by NOAA 's Atlantic Hydrographic Branch, covers approximately 41.1 km 2 of the sea floor in north-central Long Island Sound off Branford, Connecticut. Shell bed provides shelter for juvenille skate.The mosaic and its interpretation serve many purposes, including: (1) defining the geological variability of the sea floor, which is one of the primary controls of benthic habitat diversity; (2) improving our understanding of the processes that control the distribution and transport of bottom sediments and the distribution of benthic habitats and associated infaunal community structures; and (3) providing a detailed framework for future research, monitoring, and management activities. The sidescan sonar mosaic also serves as a base map for subsequent sedimentological, geochemical, and biological observations, because precise information on environmental setting is important for selection of sampling sites and for appropriate interpretation of point measurements.

Connecticut

Interpolation of reconnaissance multibeam bathymetry from north-central Long Island Sound

Introduction The U.S. Geological Survey (USGS), in cooperation with the National Oceanic and Atmospheric Administration (NOAA) and the Connecticut Department of Environmental Protection (CT DEP), has produced detailed maps of the sea floor in Long Island Sound, a major East Coast estuary surrounded by the most densely populated region of the United States (fig. 1). The current phase of this cooperative research program is directed toward studies of sea-floor topography and its effect on the distributions of sedimentary environments and benthic communities. Because anthropogenic wastes, toxic chemicals, and changes in land-use patterns resulting from residential, commercial, and recreational development have stressed the environment of the Sound, causing degradation and potential loss of benthic habitats (Koppelman and others, 1976; Long Island Sound Study, 1994), detailed maps of the sea floor are needed to help evaluate the extent of adverse impacts and to help manage resources wisely in the future.

Connecticut, New York

Sea-floor geology and topography offshore in Eastern Long Island Sound

A gridded multibeam bathymetric dataset covers approximately 133.7 square kilometers of sea floor offshore in eastern Long Island Sound. Although originally collected for charting purposes during National Oceanic and Atmospheric Administration hydrographic survey H11997, these acoustic data, and the sea-floor sampling and photography stations subsequently occupied to verify them during USGS cruise 2010-015-FA, are part of an expanding series of studies that provide a fundamental framework for research and resource management (for example, cables, pipelines, and dredging) activities in this major East Coast estuary. Results show the composition and terrain of the seabed and provide information on sediment transport and benthic habitat. Bedrock outcrops, erosional outliers, lag deposits of boulders, scour depressions, and extensive gravel pavements are common in the eastern part of the study area. These features, which result from the near-constant exposure to strong tidal currents, indicate sedimentary environments dominated by processes associated with erosion. Large fields of transverse and barchanoid sand waves in the western part of the study area reflect slightly lower energy levels and sedimentary environments where processes associated with coarse bedload transport prevail.

Open-File Report

Sea-floor character and geology off the entrance to the Connecticut River, northeastern Long Island Sound

Datasets of gridded multibeam bathymetry and sidescan-sonar backscatter, together covering approximately 29.1 square kilometers, were used to interpret character and geology of the sea floor off the entrance to the Connecticut River in northeastern Long Island Sound. Although originally collected for charting purposes during National Oceanic and Atmospheric Administration hydrographic survey H12013, these acoustic data, sidescan-sonar imagery, and the sea-floor sampling and photography stations subsequently occupied to verify the acoustic data (1) show the composition and terrain of the seabed, (2) provide information on sediment transport and benthic habitat, and (3) are part of an expanding series of studies that provide a fundamental framework for research and resource management (for example, cables, pipelines, and dredging) activities in this major east coast estuary.

Connecticut

Sea-floor geology and topography offshore in northeastern Long Island Sound

Datasets of gridded multibeam bathymetry, covering approximately 52.9 square kilometers, were used to interpret character and geology of the sea floor in northeastern Long Island Sound. Although originally collected for charting purposes during National Oceanic and Atmospheric Administration hydrographic survey H12012, these acoustic data and the sea-floor sampling and photography stations subsequently occupied to verify the acoustic data are interpreted (1) to define the composition and terrain of the seabed, (2) to provide information on sediment transport and benthic habitat, and (3) as part of an expanding series of studies that provide a fundamental framework for research and resource management (for example, cables, pipelines, and dredging) activities in this major east coast estuary.

Connecticut;New York

Spatially referenced models of streamflow and nitrogen, phosphorus, and suspended-sediment loads in streams of the Pacific region of the United States

Although spatial information describing the supply and quality of surface water is critical for managing water resources for human uses and for ecological health, monitoring is expensive and cannot typically be done over large scales or in all streams or waterbodies. To address the need for such data, the U.S. Geological Survey developed SPAtially Referenced Regression On Watershed attributes (SPARROW) for the Pacific region of the U.S. for streamflow and three water-quality constituents–total nitrogen, total phosphorus, and suspended sediment, based on a decadal time frame centered on the year 2012. The domain for these models included the Columbia River basin, the Puget Sound, the coastal drainages of Washington, Oregon, and California, and the Central Valley of California. Landscape runoff (represented by the difference between precipitation and evapotranspiration) was the largest source of streamflow, wastewater discharge, and atmospheric deposition were the largest contributors to total nitrogen yield from the Pacific region, wastewater discharge was the largest contributor to total phosphorus yield, and forest land was the largest contributor to suspended-sediment yield. Watersheds with relatively high water yields also generally had relatively high yields of total nitrogen, total phosphorous, and suspended sediment–except where there were large contributions from developed land and wastewater discharge. The data used in this study, including many that improved upon existing national data or were compiled specifically for the Pacific region, characterized the complex hydrologic and water-quality conditions in the region more completely than previous models. By using these new datasets, this investigation was able to account for the complex network of water diversions and transfers, quantify the contribution of nutrients from different sources of livestock manure, discern a signal from unpaved logging roads in the suspended-sediment yields from forested coastal watersheds, show how recent wildfire disturbance influences phosphorus and sediment delivery to streams, and how sediment delivery to streams is also sensitive to the intensity of cattle grazing. The results from this study could complement research and inform water-quality management activities in the Pacific region. Examples might include identifying potentially impaired waterbodies and guiding remediation efforts where impairment has been documented, explaining the spatial patterns in harmful algal blooms, and providing estimates of sediment and nutrient loadings to Pacific coast estuaries where such data are scarce or non-existent.

Pacific Region

Distribution and status of submerged vegetation in estuaries of the upper Texas coast

Composition and biomass of beds of submerged aquatic vegetation (SAV) in estuaries along the upper Texas coast were examined from bottom core and rake samples taken along 72 line transects during July–August 1987. Substrate composition, salinity, water depth, and water clarity were also measured at each sample station. Halodule wrightii was the dominant species of SAV meadows (69% occurrence), followed by Ruppia maritima (36%). Najas guadalupensis and Vallisneria americana were only found in the shallow (<60 cm), oligohaline (<10 ppt) waters of Trinity Bay. Halophila engelmannii and Thalassia testudinum were only found in the deeper (35–110 cm) euhaline waters (30–40 ppt) of Christmas and Matagorda Bays. H. wrightii and R. maritima occurred across the greatest depth and salinity spectra, with R. maritima more prominent in shallower (<90 cm) mixohaline waters (10–30 ppt) and H. wrightii more prominent in euhaline waters (30–40 ppt). Beds of SAV were more extensive and had greater biomass along south shorelines compared to north shorelines (P<0.045), and depth to which vegetation grew was positively correlated with water clarity (r=0.927, P<0.001). The correlations of water depth, salinity, and water clarity with variation in SAV species composition and distribution suggest that abiotic tolerances documented by previous experimental studies are major factors influencing field distributions. Comparisons with similar field data from the early 1970s corroborate the reported decrease in SAV in the Galveston Bay complex and suggest a slight increase in the Matagorda Bay complex. Decline of SAV in the Galveston Bay complex coincided with major shorefront development and a decline in numbers of wintering redhead ducks Aythya americana . Protection of shorelines of upper coast estuaries is vital to maintaining SAV resources and the dependent fauna. Where possible, barrier island preserves should be established adjacent to beds of-SAV and development restrictions implemented to reduce impacts.

Texas

Identifying the greatest earthquakes of the past 2000 years at the Nehalem River Estuary, Northern Oregon Coast, USA

We infer a history of three great megathrust earthquakes during the past 2000 years at the Nehalem River estuary based on the lateral extent of sharp (≤3 mm) peat-mud stratigraphic contacts in cores and outcrops, coseismic subsidence as interpreted from fossil diatom assemblages and reconstructed with foraminiferal assemblages using a Bayesian transfer function, and regional correlation of 14 C-modeled ages for the times of subsidence. A subsidence contact from 1700 CE (contact A), sometimes overlain by tsunami-deposited sand, can be traced over distances of 7 km. Contacts B and D, which record subsidence during two earlier megathrust earthquakes, are much less extensive but are traced across a 700-m by 270-m tidal marsh. Although some other Cascadia studies report evidence for an earthquake between contacts B and D, our lack of extensive evidence for such an earthquake may result from the complexities of preserving identifiable evidence of it in the rapidly shifting shoreline environments of the lower river and bay. Ages (95% intervals) and subsidence for contacts are: A, 1700 CE (1.1 ± 0.5 m); B, 942–764 cal a BP (0.7 ± 0.4 m and 1.0 m ± 0.4 m); and D, 1568–1361 cal a BP (1.0 m ± 0.4 m). Comparisons of contact subsidence and the degree of overlap of their modeled ages with ages for other Cascadia sites are consistent with megathrust ruptures many hundreds of kilometers long. But these data cannot conclusively distinguish among different types or lengths of ruptures recorded by the three great earthquake contacts at the Nehalem River estuary.

California, Oregon, Washington, British Columbia

Modeling the effects of large-scale interior headland restoration on tidal hydrodynamics and salinity transport in an open coast, marine-dominant estuary

The effects of large-scale interior headland restoration on tidal hydrodynamics and salinity transport in an open coast, marine dominant estuary (Grand Bay, Alabama, U.S.A) are investigated using a two-dimensional model, the Discontinuous-Galerkin Shallow Water Equations Model (DG-SWEM). Three restoration alternatives are simulated for present-day conditions, as well as under 0.5 m of sea level rise (SLR). Model results show that the restoration alternatives have no impact on tidal range within the estuary but change maximum tidal velocities by ±5 cm/s in the present-day scenarios and by ±7 cm/s in the scenarios with 0.5 m of SLR. Differences in average salinity concentrations for simulated tropical and frontal seasons show increases and decreases on the order of 2 pss in the embayments surrounding the restoration alternatives; differences were larger (on the order of ±4 pss) for the scenarios with 0.5 m of SLR. There were minimal changes in average salinity outside of the estuary and no changes offshore. The size and position of the alternatives played a role in the salinity response as a result of changing the estuarine shoreline geometry and affecting the fetch within the bay. SLR was more impactful in increasing exposure to low salinity values (i.e., less than 5 pss) than the presence of the restoration alternatives. Overall, the modeled results indicate that these large-scale restoration actions have limited and localized impacts on the hydrodynamics and salinity patterns in this open coast estuary. The results also demonstrate the nonlinear response of salinity to SLR, with increases and decreases in the maximum, mean and minimum daily salinity concentrations from present-day conditions. This nonlinear response was a result of changes in the directions of the residual currents, which affected salinity transport.

Alabama

Chapter 22: Environments and facies of existing bays on the central Texas coast

The estuaries and neritic waters along the central Texas coast are characterized by broad ranges of environmental factors, providing conditions favorable to temperate organisms in winter and tropical organisms in summer. Dredging in the coastal waters revealed a number of distinct faunal facies, the distribution of which appears to be controlled primarily by salinity. Characteristic assemblages are found in the following areas: closed bays, polyhaline bays, a highly saline lagoon, passes, beaches on the open Gulf, and shallow waters of the open gulf. In the closed bays three subfacies are recognized-one in the bay heads, one on the reefs, and one in the interreef areas; in the open gulf the assemblages living close to shore are differentiated from those found 2-4 miles off shore. In most stations each facies is characterized by an abundance of certain living forms. Dead shells and other skeletal parts are much more widely distributed, but many such strays may be recognized as transported elements by their rarity or by their eroded surfaces. Each group of organisms has one or more centers of maximum development in numbers of species. The Foraminifera, for example, attain their greatest development in the polyhaline bays and near the heads of passes, the ostracodes near the bay heads, mollusks in the polyhaline bays and in the Gulf, and diatoms under normal marine conditions in the Gulf. The reef assemblage of the closed bays is poor in numbers of species, but the individuals are so numerous that they form extensive deposits.

Texas

A conterminous USA-scale map of relative tidal marsh elevation

Tidal wetlands provide myriad ecosystem services across local to global scales. With their uncertain vulnerability or resilience to rising sea levels, there is a need for mapping flooding drivers and vulnerability proxies for these ecosystems at a national scale. However, tidal wetlands in the conterminous USA are diverse with differing elevation gradients, and tidal amplitudes, making broad geographic comparisons difficult. To address this, a national-scale map of relative tidal elevation ( Z * MHW ), a physical metric that normalizes elevation to tidal amplitude at mean high water (MHW), was constructed for the first time at 30 × 30-m resolution spanning the conterminous USA. Contrary to two study hypotheses, watershed-level median Z * MHW and its variability generally increased from north to south as a function of tidal amplitude and relative sea-level rise. These trends were also observed in a reanalysis of ground elevation data from the Pacific Coast by Janousek et al. (Estuaries and Coasts 42 (1): 85–98, 2019). Supporting a third hypothesis, propagated uncertainty in Z * MHW increased from north to south as light detection and ranging (LiDAR) errors had an outsized effect under narrowing tidal amplitudes. The drivers of Z * MHW and its variability are difficult to determine because several potential causal variables are correlated with latitude, but future studies could investigate highest astronomical tide and diurnal high tide inequality as drivers of median Z * MHW and Z * MHW variability, respectively. Watersheds of the Gulf Coast often had propagated Z * MHW uncertainty greater than the tidal amplitude itself emphasizing the diminished practicality of applying Z * MHW as a flooding proxy to microtidal wetlands. Future studies could focus on validating and improving these physical map products and using them for synoptic modeling of tidal wetland carbon dynamics and sea-level rise vulnerability analyses.

Estuaries and Coasts

Are coastal managers ready for climate change? A case study from estuaries along the Pacific coast of the United States

A key challenge for coastal resource managers is to plan and implement climate change adaptation strategies inlight of uncertainties and competing management priorities. In 2014, we held six workshops across estuaries along the Pacific coast of North America with over 150 participants to evaluate resource managers' perceived level of understanding of climate change science, where they obtain information, how they use this knowledge, and their preparedness for incorporating climate change into their management decisions. We found that most resource managers understood the types of climate change impacts likely to occur in their estuaries, but often lacked the scientific information to make decisions and plan effectively. Managers stated that time, money, and staff resources were the largest obstacles in their efforts. Managers identified that they learned most of their information from peers, scientific journals, and the Internet and indicated that sea-level rise was their greatest concern. There was, however, variation in managers' levels of readiness and perceived knowledge within and among workshop locations. The workshops revealed that some regions don't have the information they need or the planning capacity to effectively integrate climate change into their management, with eight out of fifteen site comparisons showing a significant difference between their level of preparedness (F 5,26 = 6.852; p = 0.0003), and their willingness to formally plan (F 5,26 = 12.84; p = 0.000002). We found that Urban estuaries were significantly different from Mixed Use and Rural estuaries, in having access to information and feeling more prepared to conduct climate change planning and implementation (F 2,29 = 17.34; p = 0.00001). To facilitate climate change preparedness more comprehensive integration of science into management decisions is essential.

Ocean and Coastal Management

Projecting future sea level

California&rsquo;s coastal observations and global model projections indicate that California&rsquo;s open coast and estuaries will experience increasing sea levels over the next century. Sea level rise has affected much of the coast of California, including the Southern California coast, the Central California open coast, and the San Francisco Bay and upper estuary. These trends, quantified from a small set of California tide gages, have ranged from 10&ndash;20 centimeters (cm) (3.9&ndash;7.9 inches) per century, quite similar to that estimated for global mean sea level. So far, there is little evidence that the rate of rise has accelerated, and the rate of rise at California tide gages has actually flattened since 1980, but projections suggest substantial sea level rise may occur over the next century. Climate change simulations project a substantial rate of global sea level rise over the next century due to thermal expansion as the oceans warm and runoff from melting land-based snow and ice accelerates. Sea level rise projected from the models increases with the amount of warming. Relative to sea levels in 2000, by the 2070&ndash;2099 period, sea level rise projections range from 11&ndash;54 cm (4.3&ndash;21 in) for simulations following the lower (B1) greenhouse gas (GHG) emissions scenario, from 14&ndash;61 cm (5.5&ndash;24 in) for the middle-upper (A2) emission scenario, and from 17&ndash;72 cm (6.7&ndash;28 in) for the highest (A1fi) scenario. In addition to relatively steady secular trends, sea levels along the California coast undergo shorter period variability above or below predicted tide levels and changes associated with long-term trends. These variations are caused by weather events and by seasonal to decadal climate fluctuations over the Pacific Ocean that in turn affect the Pacific coast. Highest coastal sea levels have occurred when winter storms and Pacific climate disturbances, such as El Ni&ntilde;o, have coincided with high astronomical tides. This study considers a range of projected future global sea level rises in examining possible impacts at California coastal and estuarine stations. Two climate models and three scenarios considered in this scenarios study provide a set of possible future weather and short-period climate fluctuations, and a range of potential long-term sea level rise values. A range of mean sea level rise was considered in combination with weather and El Ni&ntilde;o fluctuations extracted from two global climate models and two GHG emissions scenarios. The mean sea level rise values, determined from a survey of several climate models, range from approximately 10&ndash;80 cm (3.9&ndash;31 in) between 2000 and 2100. The middle to higher end of this range would substantially exceed the historical rate of sea level rise of 15&ndash;20 cm (5.9&ndash;7.9 in)per century observed at San Francisco and San Diego during the last 100 years. Gradual sea level rise progressively worsens the impacts of high tides and the surge and waves associated with storms. The potential for impacts of future sea level rise was assessed from the occurrence of hourly sea level extremes. The occurrence of extreme events follows a sharply escalating pattern as the magnitude of future sea level rise increases. The confluence of Low barometric pressures from storms and the presence large waves at the same time substantially increases the likelihood of high, damaging sea levels along the California coast. Similarly, astronomical tides and disturbances in sea level that are caused by weather and climate fluctuations are x transmitted into the San Francisco Bay and Delta, and on into the lower reaches of the Sacramento River. In addition to elevating Bay and Delta sea levels directly through inverse barometer and wind effects, storms may generate heavy precipitation and high fresh water runoff and cause floods in the Sacramento/San Joaquin Delta, increasing the potential for inundation of levees and other structures. There may also be increased risk of levee failure due to the hydraulics and geometry of these structures. Rising sea levels from climate change will increase the frequency and duration of extreme high water levels, causing historical coastal and San Francisco Bay/Delta structure design criteria to be exceeded.

California

Impacts of coastal land use and shoreline armoring on estuarine ecosystems: An introduction to a special issue

The nearshore land-water interface is an important ecological zone that faces anthropogenic pressure from development in coastal regions throughout the world. Coastal waters and estuaries like Chesapeake Bay receive and process land discharges loaded with anthropogenic nutrients and other pollutants that cause eutrophication, hypoxia, and other damage to shallow-water ecosystems. In addition, shorelines are increasingly armored with bulkhead (seawall), riprap, and other structures to protect human infrastructure against the threats of sea-level rise, storm surge, and erosion. Armoring can further influence estuarine and nearshore marine ecosystem functions by degrading water quality, spreading invasive species, and destroying ecologically valuable habitat. These detrimental effects on ecosystem function have ramifications for ecologically and economically important flora and fauna. This special issue of Estuaries and Coasts explores the interacting effects of coastal land use and shoreline armoring on estuarine and coastal marine ecosystems. The majority of papers focus on the Chesapeake Bay region, USA, where 50 major tributaries and an extensive watershed (~ 167,000 km 2 ), provide an ideal model to examine the impacts of human activities at scales ranging from the local shoreline to the entire watershed. The papers consider the influence of watershed land use and natural versus armored shorelines on ecosystem properties and processes as well as on key natural resources.

Estuaries and Coasts