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USGS2019

Fish assemblage structure and fisheries resources in Puerto Rico’s riverine estuaries

Tropical estuaries are diverse and productive habitats with respect to their fish assemblages and associated fisheries, but these ecosystems and fisheries are imperiled by multiple anthropogenic threats. Despite the economic, social, and biodiversity value of tropical estuarine fish assemblages, they are poorly understood, especially those on Caribbean islands. We sampled the fish assemblages of four estuaries that were broadly representative of riverine estuaries in Puerto Rico, including the Río Grande de Arecibo, Río Espiritu Santo, Río Mameyes, and Río Sabana. We used a combination of passive (gill nets) and active (seine) gears at locations that spanned the salinity gradient of each estuary during July–October 2013–2014 (rainy season) and March 2015 (dry season). Fish species richness among the riverine estuaries varied from 18 to 29 and was highest in the Río Espiritu Santo estuary. Nonmetric multidimensional scaling differentiated fish assemblages among estuaries but not by season or consistently by location within an estuary. Spearman's rank correlation analysis also revealed dissimilarity among each estuary's fish assemblage, as most pairwise correlations between the species compositions were not significant. We identified common and widespread species among estuaries, including sport fishes, such as the Tarpon Megalops atlanticus and Common Snook Centropomus undecimalis . As the only multi‐river assessment of riverine estuary fish assemblages in Puerto Rico, our results provide the best available information about the spatial variability of assemblages and fisheries resources. This information will benefit future conservation and fisheries management efforts, which are needed due to increasing anthropogenic impacts, such as illegal harvest, invasive species, and water diversions.

Puerto Rico↗

USGS2021

Reduced recruitment of Chinook salmon in a leveed bar-built estuary

Estuaries are commonly touted as nurseries for salmonids, providing numerous advantages for smolts prior to ocean entry. In bar-built estuaries, sandbars form at the mouth of rivers during periods of low stream flow, closing access to the ocean and preventing outmigration. We evaluated how summer residency in a leveed bar-built estuary affects the growth, survival, and recruitment of a Chinook salmon ( Oncorhynchus tshawytscha ) population. We performed a mark–recapture study on outmigrants to determine juvenile estuary abundance, growth, and survival. We used returning adult scales and otoliths to determine the relative proportion of summer estuary residents in spawning adults. Juveniles in the estuary grew less after mouth closure, and ultimately summer estuary residents had lower smolt-to-adult survival and contributed disproportionately less to the spawning population than juveniles that reared in the ocean their first summer. Mouth closure may lower food availability and deteriorate estuary conditions by reducing marine prey influx and estuary circulation. This research demonstrates the complexity of estuary dynamics and function as salmonid nurseries, particularly when considering the extensive modification of estuaries.

California↗

USGS1972

Physical, chemical, and biological aspects of the Duwamish River Estuary, King County, Washington, 1963-67

This report describes the significant results to 1967 of a comprehensive study that began in 1963 to evaluate what changes take place in an estuary as the loads .of raw and partially treated industrial and municipal wastes are replaced by effluent from a secondary treatment plant. The study area is the Duwamish River estuary, about 18.3 river kilometers long. At mean sea level the estuary has a water-surface area of about 1 square mile and a mean width of 440 feet. At the lowest and highest recorded tides, the volume of the estuary is about 205 and 592 million cubic feet, respectively. The estuary is well stratified (salt-wedge type) at fresh-water inflows greater than 1,000 cfs (cubic feet per second), but when inflow rates are less than 1,000 cfs the lower 5.6 kilometers of the estuary grades into the partly mixed type. The crosschannel salinity distribution is uniform for a given location and depth. Salinity migration is controlled by tides and fresh-water inflow. At fresh-water inflow rates greater than 1,000 cfs, water in the upper 8.4 kilometers of the estuary is always fresh regardless of tide. At inflow rates less than 600 cfs and tide heights greater than 10 feet; some salinity has been detected 16.1 kilometers above the mouth of the estuary. Studies using a fluorescent dye show that virtually no downward mixing into the salt wedge occurs; soluble pollutants introduced at the upper end of the estuary stay in the surface layer (5-15 ft thick). On the basis of dye studies when fresh-water inflow is less than 400 cfs, it is estimated that less than 10 percent of a pollutant will remain in the estuary a minimum of 7 days. Longitudinal dispersion coefficients for the surface layer have been determined to be on the order of 100-400 square feet per second. Four water-quality stations automatically monitor DO (dissolved oxygen), water temperature, pH, and specific conductance; at one station solar radiation also is measured. DO concentration in the surface layer decreases almost linearly in a downstream direction. Minimum DO concentration in the surface layer is usually greater than 4 rag/1 (milligrams per liter). The smallest DO values are consistently recorded in the bottom layer at the station 7.7 kilometers above the mouth; monthly means of less than 3 mg/1 of DO have occurred at this point. Manual sampling shows that the DO sag in the bottom layer oscillates between 7.7 and 10.4 kilometers above the mouth of the estuary. Multiple-regression analysis shows that the surface DO content can be estimated from the fresh-water inflow and water temperature. Tidal exchange and fresh-water inflow indirectly control the bottom DO content. Information available from previous studies failed to indicate a progressive decrease in DO content during the period 1949-56, but data from the present study suggest a slight general decrease in the annual minimum DO concentrations in both the upper and lower layers. Average nitrate concentration in fresh water at station 16.2 has increased progressively since 1964, by amounts greater than those which can be attributed to the Renton Treatment Plant, 4.3 kilometers upstream from station 16.2. The BOD (biochemical oxygen demand) in both surface and bottom layers is generally less than 4 rag/1 of oxygen, but values greater than 6 rag/1 have been measured during a period of phytoplankton bloom. Phytoplankton blooms can occur during periods of minimum tidal exchange and fresh-water inflows of less than 300 cfs if solar radiation and water temperature are optimum. Nutrients (nitrogen and phosphorus compounds) do not control the occurrence of a bloom, because sufficient quantities of these nutrients are always present. Nutrients in the treated effluent may increase the biomass of the bloom. Trace-element studies have not defined any role that these elements may play in algal growth. The inflowing fresh water contains principally calcium and bicarbonate and has a dissolved-solids content ra

Water Supply Paper↗

USGS2017

Regional acidification trends in Florida shellfish estuaries: A 20+ year look at pH, oxygen, temperature, and salinity

Increasing global CO 2 and local land use changes coupled with increased nutrient pollution are threatening estuaries worldwide. Local changes of estuarine chemistry have been documented, but regional associations and trends comparing multiple estuaries latitudinally have not been evaluated. Rapid climate change has impacted the annual and decadal chemical trends in estuaries, with local ecosystem processes enhancing or mitigating the responses. Here, we compare pH, dissolved oxygen, temperature, and salinity data from 10 Florida shellfish estuaries and hundreds of shellfish bed stations. Over 80,000 measurements, spanning from 1980 to 2008, taken on Atlantic Ocean and West Florida coast showed significant regional trends of consistent pH decreases in 8 out of the 10 estuaries, with an average rate of decrease on the Gulf of Mexico side estuaries of Florida of 7.3 × 10 −4 pH units year −1 , and average decrease on the Atlantic Coast estuaries of 5.0 × 10 −4 pH units year −1 . The rates are approximately 2–3.4 times slower than observed in pH decreases associated with ocean acidification in the Atlantic and Pacific. Other significant trends observed include decreasing dissolved oxygen in 9 out of the 10 estuaries, increasing salinity in 6 out of the 10, and temperature increases in 3 out of the 10 estuaries. The data provide a synoptic regional view of Florida estuary trends which reflect the complexity of changing climate and coastal ocean acidification superimposed on local conditions. These data provide context for understanding, and interpreting the past and predicting future of regional water quality health of shellfish and other organisms of commercial and ecological significance along Florida’s coasts.

Estuaries and Coasts↗

USGS2018

Hierarchical modeling assessment of the influence of watershed stressors on fish and invertebrate species in Gulf of Mexico estuaries

The northern Gulf of Mexico (GoM) spans five U.S. states and encompasses estuaries that vary greatly in size, shape, upstream river input, eutrophication status, and biotic communities. Given the variability among these estuaries, assessing their biological condition relative to anthropogenic stressors is challenging, but important to regional fisheries management and habitat conservation initiatives. Here, a hierarchical generalized linear modeling approach was developed to predict species presence in bottom trawl samples, using data from 33 estuaries over a nineteen-year study period. This is the first GoM estuary assessment to leverage Gulf-wide trawl data to develop species-level indicators and a quantitative index of estuary disturbance. After controlling for sources of variability at the sampling event, estuary, state, and sampling program levels, our approach screened for statistically significant relationships between watershed-level anthropogenic stressors and fish and invertebrate species presence. Modeling results indicate species level indicators with sensitivities to landscape stressor gradients. The most influential stressors include total anthropogenic land use, crop land use, and the number of toxic release sites in upstream watersheds, as well as agriculture in the shoreline buffer, each of which was significantly related to between 21% and 39% of the 57 species studied. Averaging the effects of these influential stressors across species, we develop a quantitative estuary stress index that can be compared against benchmark conditions. In general, disturbance levels were greatest in estuaries west of the Mississippi delta and in highly developed estuaries in southwest Florida. Estuaries from the Florida panhandle to the eastern Mississippi delta had less anthropogenic stress.

Gulf of Mexico↗

USGS2024

Influences of meteorological conditions, runoff, and bathymetry on summer thermal regime of a Great Lakes estuary

To better understand the primary drivers of the thermal regime in a Great Lakes estuary, and their implications for local biota, water temperature variations in the Milwaukee Estuary of Lake Michigan were studied between July and October of 2019 using a network of 25 sensors at 18 locations. Like Lake Michigan, the estuary was thermally stratified July to October, and historically dredged channels with water depths greater than 6 m allowed for the free movement of cold lake water into the estuary. However, temperatures in the estuary fluctuated rapidly both spatially and temporally, reflecting lake temperature fluctuations driven by changing meteorological conditions. Lake-driven upwelling and downwelling events influenced water temperature more than tributary contributions. Periodic upwelling and downwelling events caused temperature changes by up to 15 °C in less than 24 h. Nearshore upwelling events occasionally allowed cold, hypolimnetic lake water to reach tributary portions of the estuary beyond dredged areas, while downwelling events disrupted thermal stratification and caused the deep, dredged portions of the estuary to exceed 20 °C. Thermal impacts from these events were especially noticeable in transition zones between dredged and not dredged channels less than 2 m deep. The warming effects from downwelling persisted longer inside the estuary – up to two weeks – than cooling effects from upwelling, which typically lasted a few days. The predominantly lake-driven, rapid summer water temperature fluctuations observed in the Milwaukee Estuary serve as an important consideration in habitat restoration activities happening in Great Lakes estuaries.

Wisconsin↗

USGS2008

Characterization of estuary use by Nisqually Hatchery Chinook based on Otolith analysis

INTRODUCTION The Nisqually Fall Chinook population is one of 27 stocks in the Puget Sound evolutionarily significant unit listed as threatened under the federal Endangered Species Act (ESA). Preservation and extensive restoration of the Nisqually delta ecosystem are planned to assist in recovery of the stock. A pre-restoration baseline including life history types, estuary residence time, growth rates, and habitat use are needed to evaluate the potential response of hatchery and wild Chinook salmon to restoration. Otolith analysis has been selected as a means to examine Chinook salmon life history, growth, and residence in the Nisqually estuary. Over time, the information from the otolith analyses will be used to: 1) determine if estuary restoration actions cause changes to the population structure (i.e. frequency of the different life history trajectories) for Nisqually River Chinook, 2) compare pre- and post- restoration residence times and growth rates, 3) suggest whether estuary restoration yields substantial benefits for Chinook salmon through (1) and (2), and 4) compare differences in habitat use between hatchery and wild Chinook to further protect ESA listed stock. Otoliths are calcium carbonate structures in the inner ear that grow in proportion to the overall growth of the fish. Daily growth increments can be measured so date and fish size at various habitat transitions can be back-calculated. Careful analysis of otolith microstructure can be used to determine the number of days that a fish resided in the estuary as a juvenile (increment counts), size at entrance to the estuary, size at egress, and the amount that the fish grew while in the estuary. Juvenile hatchery Chinook salmon are generally released as smolts that move quickly through the delta with much shorter residence times than for many wild fish and are not dependent on the delta as nursery habitat (Myers and Horton 1982; Mace 1983; Levings et al. 1986). The purpose of this study is to use and evaluate otolith microstructure analysis as a tool for assessing the role of the estuary in the life history of hatchery Chinook salmon in the Nisqually River before and after restoration efforts at the Nisqually National Wildlife Refuge (Nisqually NWR). This tool is used to quantify changes in rate of growth, length of residence and habitat use to help predict restoration benefits to the federally threatened Nisqually River hatchery and wild Chinook salmon populations. Analysis of otolith microstructure typically is superior to the alternative of traditional mark-recapture methods. The latter are extremely expensive or inadequate in estuary habitats, typically are biased and substantially underestimate use, and do not directly reveal the importance or contribution to adult recruitment (i.e., they do not account for any differential survival afterward in Puget Sound or the ocean). Analysis of otolith microstructure for these purposes is proving successful for the Nisqually wild Chinook stock as well as a similar study that USGS and partners are conducting in the Skagit River estuary system located in northern Puget Sound. This work is based on research by Neilson et al. (1985). We expect to use the Skagit River as a reference for the before/after restoration comparison in the Nisqually River.

Open-File Report↗

USGS2020

Simulation of discharge, water-surface elevations, and water temperatures for the St. Louis River estuary, Minnesota-Wisconsin, 2016–17

The St. Louis River estuary is a large freshwater estuary, next to Duluth, Minnesota, that encompasses the headwaters of Lake Superior. The St. Louis River estuary is one of the most complex and compromised near-shore systems in the upper Great Lakes with a long history of environmental contamination caused by logging, mining, paper mills, and other heavy industrial activities. Presently (2020), a widely available, science-based assessment tool capable of evaluating ecosystem-level responses to remediation and restoration projects has not existed for the estuary. To address this need, the U.S. Geological Survey (USGS) built a predictive, mechanistic, three-dimensional hydrodynamic model for the estuary using the Environmental Fluid Dynamics Code framework. In the current version, the model can simulate continuous discharge, water-surface elevations, water temperature, and flow velocity, although the modular framework allows for future additions of water-quality modeling. The model was calibrated using data collected from April 2016 through November 2016 and validated with data collected from April 2017 through November 2017. The four types of data used to evaluate model performance were water-surface elevations, discharge, water temperature, and flow velocities. Streamflow and temperature boundary condition data included a mixture of USGS streamgage data, Minnesota Department of Natural Resources gage data, and estimates derived from the gage data. The model was able to simulate the water-surface elevations with generally good agreement between the simulated and measured values for both years at the daily time step. Specifically, the model was able to demonstrate excellent agreement with the measured data with Nash-Sutcliffe efficiency coefficients greater than 0.8 for all three locations; however, the model was unable to produce hourly water-surface elevations with such accuracy for 2016–17. Discharge was more dynamic than the water-surface elevations, both for the measured and simulated data. Generally, most of the discharge ranged from −650 to 1,200 cubic meters per second, but the constantly changing flux exiting the estuary into Lake Superior (positive flows) and entering the estuary from Lake Superior (negative flows) occurred throughout the year. Even upstream at the St. Louis River at Oliver, Wisconsin, gage (USGS station 0402403250), the effect of flows into the estuary from Lake Superior did occur, demonstrating the strong effect of the Lake Superior seiche on flows for the estuary. From a performance standpoint, the model was able to simulate discharge with generally good agreement in both years, although the 2017 validation was better than the 2016 calibration period. For the daily Nash-Sutcliffe efficiency coefficients, the simulated values were 0.98, 0.62, 0.49, and 0.71 for the Oliver gage; the Superior Bay entry channel at Superior, Wisc., (USGS station 464226092005600); the Superior Bay Duluth Ship Canal at Duluth, Minn., (USGS station 464646092052900); and total entries (combination of the Superior entry and Duluth entry), respectively. For the hourly evaluation criteria, the model performed poorly, with Nash-Sutcliffe efficiency coefficients less than 0 for the two entries into Lake Superior; therefore, as a predictor of discharge at the hourly scale, the model performed worse than using the measured data average. Similar to discharge, the model was a good predictor of flow velocity at the daily time scale but had difficulty matching the measured data at the hourly scale. For discharge and flow velocity, matching at subdaily time steps for a system as complicated as the St. Louis River estuary is considered difficult because the match is highly sensitive to coordinating the exact measurement location to the simulated value. The final calibration target was water temperature, calibrated for the Oliver gage and the Duluth entry. For calibration purposes, the Duluth entry was the more important water temperature target because the Oliver gage was more of an internal check on the model. The Nash-Sutcliffe efficiency coefficients for the Duluth entry were high; hourly Nash-Sutcliffe efficiency coefficients at the Duluth entry were either at or greater than 0.7 for both years, and daily values were 0.84 and 0.82 for 2016 and 2017, respectively.

Minnesota, Wisconsin↗

USGS2020

Effects of elevated sea levels and waves on southern California estuaries during the 2015–2016 El Niño

The 2015–2016 El Niño provided insight into how low-inflow estuaries might respond to future climate regimes, including high sea levels and more intense waves. High waves and water levels coupled with low rainfall along the Southern California coastline provided the opportunity to examine how extreme ocean forcing impacts estuaries independently from fluvial events. From November 2015 to April 2016, water levels were measured in 13 Southern California estuaries, including both intermittently closed and perennially open estuaries with varying watershed size, urban development, and management practices. Elevated ocean water levels caused raised water levels and prolonged inundation in all of the estuaries studied. Water levels inside perennially open estuaries mirrored ocean water levels, while those inside intermittently closed estuaries (ICEs) exhibited enhanced higher-high water levels during large waves, and tides were truncated at low tides due to a wave-built sand sill at the mouth, resulting in elevated detided water levels. ICEs closed when sufficient wave-driven sand accretion formed a barrier berm across the mouth separating the estuary from the ocean, the height of which can be estimated using estuarine lower-low water levels. During the 2015–2016 El Niño, a greater number of Southern California ICEs closed than during a typical year and ICEs that close annually experienced longer than normal closures. Overall, sill accretion and wave exposure were important contributing factors to individual estuarine response to ocean conditions. Understanding how estuaries respond to increased sea levels and waves and the factors that influence closures will help managers develop appropriate adaptation strategies.

California↗

USGS1988

Late Wisconsinan-Holocene paleogeography of Delaware Bay; a large coastal plain estuary

Analyses of an extensive grid of seismic reflection profiles along with previously published core data and modern sedimentary environment information from surrounding coastal areas permit an outline of the paleogeography of the large Delaware Bay estuary during the last transgression of sea level. During late Wisconsinan times, the Delaware River system eroded a dendritic drainage pattern into the gravelly and muddy sands of Tertiary and younger age beneath the southern half of the lower bay area. This system included the trunk valley of the ancestral river and a large tributary valley formed by the convergence of secondary streams along the Delaware coast. The evolution of the estuary from this drainage system proceeded as follows: (1) When local relative sea level was at -50 m, the head of the tide reached the present bay-mouth area. (2) At -40 m (possibly 15,000-12,000 yrs ago), the trunk valley of the drainage system was a tidal river that extended more than 30 km up the bay, and a small contiguous inlet existed at the bay mouth. (3) At -30 m (approximately 11,000-10,000 yrs ago), the estuary comprised two narrow passages formed by the drowning of the main and tributary river valleys, and the bay-mouth inlet was 5-6 km wide. (4) At -20 m (between 8000 and 7000 yrs ago), the two passages of the estuary were joined, except for a series of small islands on top of a low intervening ridge, and the inlet channel was 11 km wide. (5) At -10 m (between 6000 and 5000 yrs ago), the estuary was nearly continuous and encompassed about 60% of the present lower bay area. Thin, coarse-grained fluvial deposits accumulated initially within the main channels of the former drainage system as base level was elevated by rising sea level. During the subsequent development of the estuary, clayey silts were deposited rapidly beneath the nontidal estuarine depocenter (turbidity maximum) as it migrated through the bay area, and organic muds accumulated in tidal wetlands that occupied the mouths of tributaries and small marginal embayments. As the fetch and tidal prism of the estuary increased, narrow barrier and headland beaches, composed of fine to coarse sands, were formed locally along the bay shorelines. In the later stages of development, sediment scour, reworking and transport became the dominant processes within the open estuary. Data from this study demonstrate the great temporal and spatial variability of sedimentary deposits within large drowned river-valley estuaries and outline a model that can be used to interpret ancient estuarine strata. ?? 1988.

Delaware, New Jersey↗

USGS2021

Wetlands in intermittently closed estuaries can build elevations to keep pace with sea-level rise

Sea-level rise is a threat to coastal ecosystems, which have important conservation and economic value. While marsh response to sea-level rise has been well characterized for perennially open estuaries, bar-built intermittently-closed estuaries and their sea-level rise response are seldom addressed in the literature – despite being common globally. We seek to advance the conceptual understanding of sea-level rise response of marshes by incorporating the unique nature of intermittently-closed estuaries in a marsh model. We hypothesize that intermittently-closed-estuary marshes may be more resilient to sea-level rise than open-estuary marshes due to greater initial elevation capital and higher accretion rates due to closure events. Using California, USA as a case study, spatial analysis shows that marshes in intermittently-closed-estuaries had significantly greater elevations (x̄ = 1.93 m ± 0.2 standard error, n = 14) than marshes in permanently open estuaries (x̄ = 0.94 m ± 0.1 standard error, n = 8; P = 0.003). We then used a process-based model to determine marsh elevation change under 840 simulated responses to sea-level rise to 2100. Our modeling shows that regular annual mouth closure can promote accretion rates and increase marsh elevations fast enough to match even high rates of sea-level rise, as fluvial sediment pulses can be captured in the estuary. Modeled suspended sediment concentration had the strongest effect on accretion, followed by probability of annual mouth closure. Intermittently closed estuaries are critical environments where marshes may be sustained under high rates of sea-level rise, thus reducing the anticipated global loss of these important ecosystems. Our results begin to fill an important gap in the knowledge about marsh accretion and identify research needs to inform coastal management.

Estuarine, Coastal and Shelf Science↗

USGS2010

Seasonal and Spatial Distribution of Freshwater Flow and Salinity in the Ten Thousand Islands Estuary, Florida, 2007-2009

The watershed of the Ten Thousand Islands (TTI) estuary has been substantially altered through the construction of canals and roads for the Southern Golden Gate Estates (SGGE), Barron River Canal, and U.S. 41 (Tamiami Trail). Two restoration projects designed to improve freshwater delivery to the estuary are the Picayune Strand Restoration Project, which includes the Southern Golden Gate Estates, and the Tamiami Trail Culverts Project; both are part of the Comprehensive Everglades Restoration Plan. To address hydrologic information needs critical for monitoring the effects of these restoration projects, the U.S. Geological Survey initiated a study in October 2006 to characterize freshwater outflows from the rivers, internal circulation and mixing within the estuary, and surface-water exchange between the estuary and Gulf of Mexico. The effort is conducted in cooperation with the South Florida Water Management District and complemented by monitoring performed by the Rookery Bay National Estuarine Research Reserve. Surface salinity was measured during moving boat surveys using a flow-through system that operated at planing speeds averaging 20 miles per hour. The data were logged every 10 seconds by a data recorder that simultaneously logged location information from a Global Positioning System. The major rivers, bays, and nearshore Gulf of Mexico region of the TTI area were surveyed in approximately 5 hours by two boats traversing about 200 total miles. Salinity and coordinate data were processed using inverse distance weighted interpolation to create salinity contour maps of the entire TTI region. Ten maps were created from salinity surveys performed between May 2007 and May 2009 and illustrate the dry season, transitional, and wet season salinity patterns of the estuarine rivers, inner bays, mangrove islands, and Gulf of Mexico boundary. The effects of anthropogenic activities are indicated by exceptionally low salinities associated with point discharge into the estuary from the Faka Union Canal and Barron River during the wet season. Low salinities in Faka Union Bay may cause reduced diversity and density of submerged aquatic vegetation, fish, and benthic organisms compared with neighboring Fakahatchee Bay. The Faka Union Canal System reduced the size of the watershed for the western TTI estuary, resulting in increased wet season salinities compared to those for the eastern TTI estuary, the watershed of which is composed of the relatively pristine Fakahatchee Strand Preserve State Park. Minimal river discharge and high evaporation caused hypersaline conditions to develop throughout the entire TTI region during the dry season. The 2007-2008 drought and passage of Tropical Storm Fay on August 18-19, 2008, demonstrated the effects of seasonal rainfall on salinity patterns, with substantially higher salinities observed during the 2007 wet season compared to those for the 2008 wet season. The salinity maps, coupled with data from the monitoring stations, provide baseline information of seasonal and spatial distribution of freshwater flow and salinity in the TTI estuary, and a means of monitoring the effects of restoration in improving freshwater delivery to the estuary.

Data Series↗

USGS2007

Circulation and physical processes within the San Gabriel River Estuary during summer 2005

The Southern California Coastal Water Research Project (SCCWRP) is developing a hydrodynamic model of the SGR estuary, which is part of the comprehensive water-quality model of the SGR estuary and watershed investigated by SCCWRP and other local agencies. The hydrodynamic model will help understanding of 1) the exchange processes between the estuary and coastal ocean; 2) the circulation patterns in the estuary; 3) upstream natural runoff and the cooling discharge from PGS. Like all models, the SGR hydrodynamic model is only useful after it is fully calibrated and validated. In May 2005, SCCWRP requested the assistance of the U.S. geological Survey (USGS) Coastal and Marine Geology team (CMG) in collecting data on the hydrodynamic conditions in the estuary during the summer dry season. The summer was chosen for field data collection as this was assumed to be the season with the greatest potential for chronic degraded water quality due to low river flow and high thermal stratification within the estuary (due to both higher average air temperature and PGS output). Water quality can be degraded in winter as well, when higher river discharge events bring large volumes of water from the Los Angeles basin into the estuary. The objectives of this project were to 1) collect hydrodynamic data along the SGR estuary; 2) study exchange processes within the estuary through analysis of the hydrodynamic data; and 3) provide field data for model calibration and validation. As the data only exist for the summer season, the results herein only apply to summer conditions.

California↗

USGS1982

Chemical and physical characteristics of water in estuaries of Texas, October 1976-September 1978

The Texas Water Plan (1968) proposes development and utilization of water resources in Texas and includes provision for the use and preservation of water in the estuaries of the State. Management of estuarine waters requires knowledge of the hydrodynamics and of the continuing changes in the chemical and physical characteristics of water in the estuaries. In September 1967, the U.S. Geological Survey and the Texas Department of Water Resources began a cooperative water-resources investigation of the principal estuaries along the Texas coast (fig. 1) except the Rio Grande estuary, which is under the jurisdiction of the International Boundary and Water Commission, United States and Mexico. The objectives of the investigation are to define: (1) The occurrence, source, and distribution of nutrients; (2) the physical, organic, and inorganic water-quality constituents and their areal distribution and time variations; (3) the chemical and physical characteristics of Gulf water that enters the estuaries; (4) the occurrence, quality, quantity, and dispersion of drainage entering the estuarine systems; and (5) the current patterns, directions, and rates of water movement. The coastal waters of Texas are not classical estuaries, but are similar to them in ecosystems and mixing phenomena. A description of various types of estuaries is presented in "Estuaries" edited by Lauff (1967, p. 3-11). The term estuary as used in this report, refers to concomitant water bodies in which streamflow mixes with seawater.

Open-File Report↗

USGS1993

Heavy metal anomalies in the Tinto and Odiel River and estuary system, Spain

The Tinto and Odiel rivers drain 100 km from the Rio Tinto sulphide mining district, and join at a 20-km long estuary entering the Atlantic Ocean. A reconnaissance study of heavy metal anomalies in channel sand and overbank mud of the river and estuary by semi-quantitative emission dc-arc spectrographic analysis shows the following upstream to downstream ranges in ppm (??g g-1): As 3,000 to <200, Cd 30 to <0.1, Cu 1,500 to 10, Pb 2,000 to <10, Sb 3000 to <150, and Zn 3,000 to <200. Organic-rich (1.3-2.6% total organic carbon, TOC), sandysilty overbank clay has been analyzed to represent suspended load materials. The high content of heavy metals in the overbank clay throughout the river and estuary systems indicates the importance of suspended sediment transport for dispersing heavy metals from natural erosion and anthropogenic mining activities of the sulfide deposit. The organic-poor (0.21-0.37% TOC) river bed sand has been analyzed to represent bedload transport of naturally-occurring sulfide minerals. The sand has high concentrations of metals upstream but these decrease an order of magnitude in the lower estuary. Although heavy metal contamination of estuary mouth beach sand has been diluted to background levels estuary mud exhibits increased contamination apparently related to finer grain size, higher organic carbon content, precipitation of river-borne dissolved solids, and input of anthropogenic heavy metals from industrial sources. The contaminated estuary mud disperses to the inner shelf mud belt and offshore suspended sediment, which exhibit metal anomalies from natural erosion and mining of upstream Rio Tinto sulphide lode sources (Pb, Cu, Zn) and industrial activities within the estuary (Fe, Cr, Ti). Because heavy metal contamination of Tinto-Odiel river sediment reaches or exceeds the highest levels encountered in other river sediments of Spain and Europe, a detailed analysis of metals in water and suspended sediment throughout the system, and epidemiological analysis of heavy metal effects in humans is appropriate. ?? 1993 Estuarine Research Federation.

Estuaries↗

USGS2007

A review of land–sea coupling by groundwater discharge of nitrogen to New England estuaries: Mechanisms and effects

Hydrologists have long been concerned with the interface of groundwater flow into estuaries, but not until the end of the last century did other disciplines realize the major role played by groundwater transport of nutrients to estuaries. Mass balance and stable isotopic data suggest that land-derived NO 3 , NH 4 , and dissolved organic N do enter estuaries in amounts likely to affect the function of the receiving ecosystem. Because of increasing human occupancy of the coastal zone, the nutrient loads borne by groundwater have increased in recent decades, in spite of substantial interception of nutrients within the land and aquifer components of watersheds. Groundwater-borne nutrient loads have increased the N content of receiving estuaries, increased phytoplankton and macroalgal production and biomass, decreased the area of seagrasses, and created a cascade of associated ecological changes. This linkage between land use and eutrophication of estuaries occurs in spite of mechanisms, including uptake of land-derived N by riparian vegetation and fringing wetlands, “unloading” by rapid water removal, and direct N inputs to estuaries, that tend to uncouple the effects of land use on receiving estuaries. It can be expected that as human activity on coastal watersheds continues to increase, the role of groundwater-borne nutrients to the receiving estuary will also increase.

New England↗

USGS2007

Modeling pesticide fate in a small tidal estuary

The exposure analysis modeling system (EXAMS), a pesticide fate model developed by the U.S. Environmental Protection Agency, was modified to model the fate of the herbicides atrazine and metolachlor in a small tidally dominated estuary (Bath Creek) in North Carolina, USA where freshwater inflow accounts for only 3% of the total flow. The modifications simulated the changes that occur during the tidal cycle in the estuary, scenarios that are not possible with the original EXAMS model. Two models were created within EXAMS, a steady-state model and a time-variant tidally driven model. The steady-state model accounted for tidal flushing by simply altering freshwater input to yield an estuary residence time equal to that measured in Bath Creek. The tidal EXAMS model explicitly incorporated tidal flushing by modifying the EXAMS code to allow for temporal changes in estuary physical attributes (e.g., volume). The models were validated with empirical measurements of atrazine and metolachlor concentrations in the estuary shortly after herbicide application in nearby fields and immediately following a rain event. Both models provided excellent agreement with measured concentrations. The steady-state EXAMS model accurately predicted atrazine concentrations in the middle of the estuary over the first 3 days and under-predicted metolachlor by a factor of 2-3. The time-variant, tidally driven EXAMS model accurately predicted the rise and plateau of both herbicides over the 6-day measurement period. We have demonstrated the ability of these modified EXAMS models to be useful in predicting pesticide fate and exposure in small tidal estuaries. This is a significant improvement and expansion of the application of EXAMS, and given the wide use of EXAMS for surface water quality modeling by both researchers and regulators and the ability of EXAMS to interface with terrestrial models (e.g., pesticide root zone model) and bioaccumulation models, we now have an easily-accessible and widely accepted means of modeling chemical fate in estuaries. ?? 2006 Elsevier B.V. All rights reserved.

Ecological Modelling↗

USGS2023

A life cycle model for evaluating estuary residency and restoration potential in Chinook salmon

Understanding the spatial and temporal habitat use of a population is a necessary step for recovery planning. For Chinook salmon ( Oncorhynchus tshawytscha ), variation in their migration and habitat use complicate predicting how restoring habitats could impact total recruitment. To evaluate how juvenile life history variation affects a population’s response to potential restoration, we developed a stage-structured model for a Chinook salmon population in a northern California river with a seasonally closed estuary. We modeled the timing of juvenile migration and estuarine use as a function of freshwater conditions and fish abundance. We used the model to evaluate the sensitivity of the population to different estuary and freshwater restoration scenarios that could affect population parameters at different life stages. The population’s run size increased most in response to freshwater restoration that enhanced spawning productivity (egg and fry survival), followed by spawner capacity. In contrast, estuary restoration scenarios affected only a subset of Chinook salmon (average 15%), and as a result, did not have a large impact on the total recruitment of a cohort. Under current condition, estuary rearing fish were over six times less likely to survive than fish that migrate to the ocean in the spring or early summer before estuary closure. Because estuary residents experienced low survival in the estuary and in the ocean, improvements to both estuary survival and growth would be needed to increase their total survival. When life cycle monitoring data is available, life cycle models such as ours generate predictions at scales relevant to conservation and are an advantageous approach to managing and conserving anadromous salmon that use multiple habitats throughout their life cycle.

California↗