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Promoting synergy in the innovative use of environmental data—Workshop summary

From December 2 to 4, 2015, NatureServe and the U.S. Geological Survey organized and hosted a biodiversity and ecological informatics workshop at the U.S. Department of the Interior in Washington, D.C. The workshop objective was to identify user-driven future directions and areas of collaboration in advanced applications of environmental data applied to forecasting and decision making for the sustainability of biodiversity and ecosystem services. Substantial effort to recruit attendees from diverse Federal, State, and private sector organizations successfully attracted participants from 20 Federal agencies and 48 different institutions in the academic, nonprofit, State government, and commercial sectors; the total number of attendees ranged from 100 to 144 during the 3-day workshop. The first one-half of the workshop was divided into 7 plenary sessions and 3 sets of lightning talk sessions organized by sector, providing 48 oral and visual plenary presentations that shared diverse perspectives on biodiversity and ecological informatics, including original biospatial analyses from 6 graduate student map contest winners. The second one-half of the workshop focused on 10 breakout sessions with participant-driven themes from the environmental data sphere and concluded with an address by the Director of the U.S. Fish and Wildlife Service. The workshop was structured to encourage interactivity. About 80–90 percent of attendees provided direct feedback using clicker devices for specific questions related to biodiversity and ecological data uses and needs, and 10 breakout session leaders shared the highlights of their group discussions during the final workshop plenary sessions. Participants were encouraged to use the Twitter hashtag #ShareUrData. Over lunch on day 2 there were 20 simultaneous presentations of tools and apps during a special “Tools Café” session. The 10 participant-defined breakout session topics are listed below: Ecosystem services and ecological indicators Inventory and monitoring Biogeographic map of the Nation Pollinators Invasive species Remote sensing Drivers of agricultural change Citizen science Climate Hydrology and watersheds Numerous common themes that emerged from the workshop include the following: The vital importance of completing foundational environmental datasets that are nationally consistent and are essential to multiple sectors, such as the Soil Survey Geographic database high-resolution soils data, a minimum 5-meter resolution digital elevation model, national hydrographic data, high-resolution land cover data, time series high-resolution spatial climate data from historical to future time steps, and a national wetland inventory. Improved, nationally consistent environmental datasets (integrated with targeted observations) will dramatically advance forecasting capacity and support early warning systems (that is, drought, forest disease); however, multiagency coordination should focus on decision support tools that convey appropriate actions and responses to adapt to, and mitigate, potential negative consequences. Digitizing and providing access to the vast stores of underused historical data that can be leveraged for this purpose is of national importance. Modern computational techniques and the ever-increasing flow of environmental data from ground and remote observations can support improved understanding of environmental change. Success of understanding patterns of change for decision making requires establishing baselines from which change can be measured. The value of digitized historical data is greater than ever before. There is a need to recognize the multifaceted potential of citizen science to engage the public in resource stewardship, to create the next generation of science, technology, engineering, math, and environmental leaders, and to have sufficient field personnel to monitor environmental trends, including early detection of alien invasive species, phenological shifts, shifting distribution and abundance of indicator species, and species inventories. The Federal government has an essential role in creating the infrastructure to dramatically improve mobilization of citizen science (and other) data by fostering the following: creation of data standards, creation of nationally consistent framework datasets, vertical integration of observation data, visualization and dissemination of aggregated datasets, and calculation and communication of derived trends. Current and near future trends in the availability of remotely sensed data (rapid expansion of satellite fleets and drones) is revolutionizing access to near-real-time ecological data. Targeted integration with ground-based observations and instrumentation has an extremely valuable role in validating remotely sensed data, filling data gaps, improving data quality, and fully realizing the potential of the near-real-time monitoring of environmental indicator trends. Integrated management of environmental data at the landscape scale is required even as specific actions on the ground are largely local in nature. The workshop highlighted numerous success stories; however, almost every breakout group pointed out the still-too-fragmented nature of the current data landscape. Management and delivery of the necessary data, tools, and analyses to sustain our Nation’s environmental capital must be a collaborative effort between Federal, State, and local governments, academia, nonprofits, and the commercial sector, even though the responsibilities of each sector are different.

Open-File Report

Coastal flood inundation monitoring with Satellite C-band and L-band Synthetic Aperture Radar data

Satellite Synthetic Aperture Radar (SAR) was evaluated as a method to operationally monitor the occurrence and distribution of storm- and tidal-related flooding of spatially extensive coastal marshes within the north-central Gulf of Mexico. Maps representing the occurrence of marsh surface inundation were created from available Advanced Land Observation Satellite (ALOS) Phased Array type L-Band SAR (PALSAR) (L-band) (21 scenes with HH polarizations in Wide Beam [100 m]) data and Environmental Satellite (ENVISAT) Advanced SAR (ASAR) (C-band) data (24 scenes with VV and HH polarizations in Wide Swath [150 m]) during 2006-2009 covering 500 km of the Louisiana coastal zone. Mapping was primarily based on a decrease in backscatter between reference and target scenes, and as an extension of previous studies, the flood inundation mapping performance was assessed by the degree of correspondence between inundation mapping and inland water levels. Both PALSAR- and ASAR-based mapping at times were based on suboptimal reference scenes; however, ASAR performance seemed more sensitive to reference-scene quality and other types of scene variability. Related to water depth, PALSAR and ASAR mapping accuracies tended to be lower when water depths were shallow and increased as water levels decreased below or increased above the ground surface, but this pattern was more pronounced with ASAR. Overall, PALSAR-based inundation accuracies averaged 84% (n = 160), while ASAR-based mapping accuracies averaged 62% (n = 245).

Louisiana

Evaluating the adequacy of a reference site pool for ecological assessments in environmentally complex regions

Many advances in the field of bioassessment have focused on approaches for objectively selecting the pool of reference sites used to establish expectations for healthy waterbodies, but little emphasis has been placed on ways to evaluate the suitability of the reference-site pool for its intended applications (e.g., compliance assessment vs ambient monitoring). These evaluations are critical because an inadequately evaluated reference pool may bias assessments in some settings. We present an approach for evaluating the adequacy of a reference-site pool for supporting biotic-index development in environmentally heterogeneous and pervasively altered regions. We followed common approaches for selecting sites with low levels of anthropogenic stress to screen 1985 candidate stream reaches to create a pool of 590 reference sites for assessing the biological integrity of streams in California, USA. We assessed the resulting pool of reference sites against 2 performance criteria. First, we evaluated how well the reference-site pool represented the range of natural gradients present in the entire population of streams as estimated by sites sampled through probabilistic surveys. Second, we evaluated the degree to which we were successful in rejecting sites influenced by anthropogenic stress by comparing biological metric scores at reference sites with the most vs fewest potential sources of stress. Using this approach, we established a reference-site pool with low levels of human-associated stress and broad coverage of environmental heterogeneity. This approach should be widely applicable and customizable to particular regional or programmatic needs.

California

Microbial populations in contaminant plumes

Efficient biodegradation of subsurface contaminants requires two elements: (1) microbial populations with the necessary degradative capabilities, and (2) favorable subsurface geochemical and hydrological conditions. Practical constraints on experimental design and interpretation in both the hydrogeological and microbiological sciences have resulted in limited knowledge of the interaction between hydrogeological and microbiological features of subsurface environments. These practical constraints include: (1) inconsistencies between the scales of investigation in the hydrogeological and microbiological sciences, and (2) practical limitations on the ability to accurately define microbial populations in environmental samples. However, advances in application of small-scale sampling methods and interdisciplinary approaches to site investigations are beginning to significantly improve understanding of hydrogeological and microbiological interactions. Likewise, culture-based and molecular analyses of microbial populations in subsurface contaminant plumes have revealed significant adaptation of microbial populations to plume environmental conditions. Results of recent studies suggest that variability in subsurface geochemical and hydrological conditions significantly influences subsurface microbial-community structure. Combined investigations of site conditions and microbial-community structure provide the knowledge needed to understand interactions between subsurface microbial populations, plume geochemistry, and contaminant biodegradation.

Hydrogeology Journal

Identifying transportation data and system needs for a Federal lands transportation data platform

Executive Summary Modern transportation and land-use planning efforts include information from many sources to address topics such as safety, efficiency, commercial, and social needs. This wide breadth of topics provides opportunities for collaboration and development of common tools for diverse users. In many cases, different information systems provide the spatial data and geographic content necessary for transportation and land-use planners to consider multiple lines of evidence. The Federal Highway Administration Office of Federal Lands Highway (FLH) and Federal Land Management Agency partners use detailed spatial and quantitative data to inform transportation decisions. However, logistic challenges to data sharing exist because data are often managed by separate agencies; data-exchange frameworks and interagency data agreements are insufficient; and consistency from aggregated data requires maintenance, coordination, and supporting infrastructure. The FLH and U.S. Geological Survey collaboratively examined (1) use and availability of spatial data for transportation planning and (2) a possible mechanism to use more shared and consistent data in a common planning environment. The goals of this collaborative effort were to describe data needs from the perspective of planners and to identify opportunities for shared data resources. Results presented here focus on two workshops and a subsequent investigation of data and tools available from partner agencies. The objectives of this report are to (1) describe information used in transportation planning with geographic data; (2) identify spatially explicit data that inform transportation plans and could be shared among all partners; and (3) describe current platforms, planning and administrative opportunities, and potential barriers to developing an integrated planning tool. Key information and data needs were identified in three major classes: system, user, and influential factors. System data are parts of the transportation network and information about the condition of individual segments and the network. User data provide details about the function of the system and insights into potential needs; for example, user trips between source and destinations inform road and network demands that can lead to congestion and safety issues (in the future, user data might also include scenarios and projections based on land-use plans). Influential data represent social and environmental factors that influence transit demands and network conditions. These factors could be popular locations or seasonal events that influence demand and congestion; wildlife habitat or migration intersections that affect safety and management priorities; or geologic features that influence hazards, maintenance, and safety. Responses described here provide specific information for web-tool design and give a framework for interagency communication and cooperation to address specific information needs for integrated planning. Existing web-mapping and web-services, and the data that inform them, are also described. Commonly, these data are created and published by one agency, and the core users are outside of that agency; for example, threatened species distributions are published by the U.S. Fish and Wildlife Service for consideration by planners in advance of National Environmental Policy Act (42 U.S.C. 4321 et seq.) evaluation. This report is provided to inform FLH leaders and Federal Land Management Agency partners by articulating user needs and requirements for integrated planning tool(s). Programmers creating a secure web-based data-sharing platform (with data-viewing, -analysis and -download functions) can use the information presented here to organize data and user interfaces. This integrated perspective can help FLH and Federal Land Management Agency partners develop transportation networks that better serve the needs of people in local communities and across States and the Nation.

Open-File Report

Climate and plant controls on soil organic matter in coastal wetlands

Coastal wetlands are among the most productive and carbon‐rich ecosystems on Earth. Long‐term carbon storage in coastal wetlands occurs primarily belowground as soil organic matter (SOM). In addition to serving as a carbon sink, SOM influences wetland ecosystem structure, function, and stability. To anticipate and mitigate the effects of climate change, there is a need to advance understanding of environmental controls on wetland SOM. Here, we investigated the influence of four soil formation factors: climate, biota, parent materials, and topography. Along the northern Gulf of Mexico, we collected wetland plant and soil data across elevation and zonation gradients within ten estuaries that span broad temperature and precipitation gradients. Our results highlight the importance of climate‐plant controls and indicate that the influence of elevation is scale and location dependent. Coastal wetland plants are sensitive to climate change; small changes in temperature or precipitation can transform coastal wetland plant communities. Across the region, SOM was greatest in mangrove forests and in salt marshes dominated by graminoid plants. SOM was lower in salt flats that lacked vascular plants and in salt marshes dominated by succulent plants. We quantified strong relationships between precipitation, salinity, plant productivity, and SOM. Low precipitation leads to high salinity, which limits plant productivity and appears to constrain SOM accumulation. Our analyses use data from the Gulf of Mexico, but our results can be related to coastal wetlands across the globe and provide a foundation for predicting the ecological effects of future reductions in precipitation and freshwater availability. Coastal wetlands provide many ecosystem services that are SOM dependent and highly vulnerable to climate change. Collectively, our results indicate that future changes in SOM and plant productivity, regulated by cascading effects of precipitation on freshwater availability and salinity, could impact wetland stability and affect the supply of some wetland ecosystem services.

Global Change Biology

Advances in solid-phase extraction disks for environmental chemistry

The development of solid-phase extraction (SPE) for environmental chemistry has progressed significantly over the last decade to include a number of new sorbents and new approaches to SPE. One SPE approach in particular, the SPE disk, has greatly reduced or eliminated the use of chlorinated solvents for the analysis of trace organic compounds. This article discusses the use and applicability of various SPE disks, including micro-sized disks, prior to gas chromatography-mass spectrometry for the analysis of trace organic compounds in water.

TrAC - Trends in Analytical Chemistry

A workshop to advance invasive species early detection capacity of The Rapid Environmental DNA Assessment and Deployment Initiative & Network (READI-Net)

Early detection and rapid response (EDRR) can minimize the impacts of invasive species, which cost billions of dollars globally. To bolster EDRR across the United States, the U.S. Department of the Interior is working with the U.S. Geological Survey and other partners to advance a National EDRR Framework that strengthens tools, actions, and processes to find and eradicate invasive species before they establish and cause negative impacts. An important component of this framework is to strengthen molecular tools for detecting new invasions. The Rapid Environmental (e)DNA Assessment and Deployment Initiative & Network (READI-Net) project is developing automating eDNA sampling tools, processes to ensure that eDNA results are reliable for management decision-making, and information structures to deliver eDNA results to end-users. To improve the potential uptake of this molecular EDRR toolbox, READI-Net investigators met with a group of end-users, partners, developers and subject-matter experts from federal agencies, tribes, universities, and an NGO representing state agencies from February 28 to March 1, 2023, in Moss Landing, CA. Here, we summarize the READI-Net project and the corresponding participant feedback.

Management of Biological Invasions

Citizen science can improve conservation science, natural resource management, and environmental protection

Citizen science has advanced science for hundreds of years, contributed to many peer-reviewed articles, and informed land management decisions and policies across the United States. Over the last 10 years, citizen science has grown immensely in the United States and many other countries. Here, we show how citizen science is a powerful tool for tackling many of the challenges faced in the field of conservation biology. We describe the two interwoven paths by which citizen science can improve conservation efforts, natural resource management, and environmental protection. The first path includes building scientific knowledge, while the other path involves informing policy and encouraging public action. We explore how citizen science is currently used and describe the investments needed to create a citizen science program. We find that: Citizen science already contributes substantially to many domains of science, including conservation, natural resource, and environmental science. Citizen science informs natural resource management, environmental protection, and policymaking and fosters public input and engagement. Many types of projects can benefit from citizen science, but one must be careful to match the needs for science and public involvement with the right type of citizen science project and the right method of public participation. Citizen science is a rigorous process of scientific discovery, indistinguishable from conventional science apart from the participation of volunteers. When properly designed, carried out, and evaluated, citizen science can provide sound science, efficiently generate high-quality data, and help solve problems.

Biological Conservation

Anticoagulant rodenticides and wildlife: Introduction

Rodents have interacted with people since the beginning of systematic food storage by humans in the early Neolithic era. Such interactions have had adverse outcomes such as threats to human health, spoiling and consumption of food sources, damage to human infrastructure and detrimental effects on indigenous island wildlife (through inadvertent anthropogenic assisted introductions). These socio/economic and environmental impacts illustrate the clear need to control populations of commensal rodents. Different methods have been applied historically but the main means of control in the last decades is through the application of rodenticides, mainly anticoagulant rodenticides (ARs) that inhibit blood clotting. The so-called First Generation Anticoagulant Rodenticides (FGARs) proved highly effective but rodents increasingly developed resistance. This led to a demand for more effective alternative compounds and paved the way to the development of Second Generation Anticoagulant Rodenticides (SGARs). These were more acutely toxic and persistent, making them more effective but also increasing the risks of exposure of non-target species and secondary poisoning of predatory species. SGARs often fail the environmental thresholds of different regulatory frameworks because of these negative side-effects, but their use is still permitted because of the overwhelming societal needs for rodent control and the lack of effective alternatives. This book provides a state-of-the-art overview of the scientific advancements in assessment of environmental exposure, effects and risks of currently used ARs. This is discussed in relation to the societal needs for rodent control, including risk mitigation and development of alternatives.

Book chapter

The role of remote sensing observations and models in hydrology: The science of evapotranspiration

Over 15 years ago, Morton (1994) summarized the state of evapotranspiration (ET) research pessimistically: ‘There have been few significant advances in our knowledge of evaporation on an environmental scale over the past four decades, a state of affairs linked to the current sterility of hydrology and related environmental sciences. Furthermore, almost none of the advances have been used successfully in practice.’ He did not foresee the rapid progress in the ensuing years. These advances can be attributed largely to three convergent themes: 1) technical innovation; 2) synergy between disciplines; and 3) expressed need. The papers in this special issue address all of these three themes on remote sensing methods for ET estimation.

Hydrological Processes

A fresh perspective - Advancing fish immunotoxicology in a complex world

Understanding how environmental changes affect the health of organisms and ecosystems is complex, but recent interdisciplinary advances and the recognition of immune function as a dynamic mediator offer exciting progress. Environmental immunotoxicology in teleost fishes is evolving beyond cataloguing stressors towards a mechanistic, integrative framework that leverages omics, in vivo tracking and cross-disciplinary modelling. However, knowledge gaps in immune mechanisms, toxicokinetics and multi-stressor interactions remain. The present work highlights these gaps, advocating for immune function as both a mechanistic lens and an integrative health indicator. Such a framework can improve predictive risk assessments, management strategies and our understanding of contaminant effects on resilience, disease susceptibility and population viability. While challenges remain, the field is poised for significant growth through collaborative innovation and advancing technology.

FEBS Letters

Book review: Rogue waves in the ocean

Rogue Waves in the Ocean (2009) is a follow-on text to Extreme Ocean Waves (2008) edited by Pelinovsky and Kharif, both published by Springer. Unlike the earlier text, which is a compilation of papers on a variety of extreme waves that was the subject of a scientific conference in 2007, Rogues Waves in the Ocean is written, rather than edited, by Kharif, Pelinovsky, and Slunyaev and is focused on rogue waves in particular. The book consists of six chapters covering 216 pages. As the subject matter of each chapter is distinct, references appear at the end of each chapter rather than at the end of the book. The preface shows how each of the chapters relates to the larger study of rogue waves. The result is a book with a nice mix of eyewitness observations, physical theory, and statistics. Review info: Rogue Waves in the Ocean. Advances in Geophysical and Environmental Mechanics and Mathematics. B y Christian Kharif, Efim Pelinovsky and Alexey Slunyaev, 2009. ISBN: 978-3540884187, xiii, 216 pp.

Pure and Applied Geophysics

Lessons learned from development of natural capital accounts in the United States and European Union

The United States and European Union (EU) face common challenges in managing natural capital and balancing conservation and resource use with consumption of other forms of capital. This paper synthesizes findings from 11 individual application papers from a special issue of Ecosystem Services on natural capital accounting (NCA) and their application to the public and private sectors in the EU and U.S. NCA is inherently a data-integration centered exercise, aiming to draw new insights by realigning environmental and economic data into a consistent framework. Drawing primarily on papers from the special issue and other key NCA literature, we identify lessons learned and gaps remaining for NCA’s development and application to decision making. In doing so, we identify eight key similarities and three major differences in NCA development, status, and application between the U.S. and EU. NCA can be highly policy relevant: special issue papers address critical issues including agriculture, water, conservation/land-use planning, climate, and corporate decision making. In both the U.S. and EU, further application is needed to drive demand for the accounts’ production. Based on these experiences, the U.S. and EU can be important leaders in cross-sector, international collaboration toward next-generation environmental economic accounts that advance global NCA practice.

Ecosystem Services

Using climate-fire analog mapping to inform climate change adaptation strategies for wildland fire in protected areas of the conterminous US

Potential changes in wildland fire regimes due to anthropogenic climate change can be projected using data from climate models, but directly applying these meteorological variables to long-term planning and adaptive management activities may be difficult for decision makers. Analog mapping, in contrast, creates more intuitive assessments of changing fire regimes that also recognize the complex, multivariate, and multi-scalar nature of ecosystems. Here, we use data from 20 downscaled climate models under two climate forcing scenarios, Representative Concentration Pathways (RCP 4.5 and 8.5), to identify and map future climate-fire analogs for 655 protected areas in the conterminous U.S. based on annual temperature, cumulative precipitation amount and seasonality, and fire regime potentials derived from a simple process-based fire frequency model. Patterns of analogs were heavily influenced by gradients in latitude and topography, with longer time frames (end-of-century conditions) and the more extreme climate forcing scenario resulting in greater analog distances and more ensemble entropy (i.e., less consensus among climate models regarding the closest analog for a given management unit). Finer scale analyses for three protected areas (Yellowstone and Great Smoky Mountains National Parks, White Mountain National Forest) illustrate how climate-fire analog mapping can improve insight into the types of ecosystem responses that might occur under similar management conditions. Federally protected areas such as national parks, forests, and wildlife refuges have long served as reference sites for the study of fire regimes, a role that is likely to continue because many of these units are managed to allow at least some ecosystem processes to operate independently. The results suggest that analog mapping approaches are well-suited as part of qualitative assessments within climate- and fire-aware adaptive management processes. The use of analogs to depict relatable, real-world depictions of possible ecosystem changes in a given place, can help managers make more strategic choices about when and where to resist, accept, or direct climate change-driven ecological change.

Global Environmental Change Advances

A land product characterization system for comparative analysis of satellite data and products

A Land Product Characterization System (LPCS) has been developed to provide land data and products to the community of individuals interested in validating space-based land products by comparing them with similar products available from other sensors or surface-based observations. The LPCS facilitates the application of global multi-satellite and in situ data for characterization and validation of higher-level, satellite-derived, land surface products (e.g., surface reflectance, normalized difference vegetation index, and land surface temperature). The LPCS includes data search, inventory, access, and analysis functions that will permit data to be easily identified, retrieved, co-registered, and compared statistically through a single interface. The system currently includes data and products available from Landsat 4 through 8, Moderate Resolution Imaging Spectroradiometer (MODIS) Terra and Aqua, Suomi National Polar-Orbiting Partnership (S-NPP)/Joint Polar Satellite System (JPSS) Visible Infrared Imaging Radiometer Suite (VIIRS), and simulated data for the Geostationary Operational Environmental Satellite (GOES)-16 Advanced Baseline Imager (ABI). In addition to the future inclusion of in situ data, higher-level land products from the European Space Agency (ESA) Sentinel-2 and -3 series of satellites, and other high and medium resolution spatial sensors, will be included as available. When fully implemented, any of the sensor data or products included in the LPCS would be available for comparative analysis.

Remote Sensing

Estimation of octanol/water partition coefficients using LSER parameters

The logarithms of octanol/water partition coefficients, log Kow , were regressed against the linear solvation energy relationship (LSER) parameters for a training set of 981 diverse organic chemicals. The standard deviation for log Kow was 0.49. The regression equation was then used to estimate log Kow for a test of 146 chemicals which included pesticides and other diverse polyfunctional compounds. Thus the octanol/water partition coefficient may be estimated by LSER parameters without elaborate software but only moderate accuracy should be expected.

Advances in Environmental Research

Limitations and potential of satellite imagery to monitor environmental response to coastal flooding

Storm-surge flooding and marsh response throughout the coastal wetlands of Louisiana were mapped using several types of remote sensing data collected before and after Hurricanes Gustav and Ike in 2008. These included synthetic aperture radar (SAR) data obtained from the (1) C-band advance SAR (ASAR) aboard the Environmental Satellite, (2) phased-array type L-band SAR (PALSAR) aboard the Advanced Land Observing Satellite, and (3) optical data obtained from Thematic Mapper (TM) sensor aboard the Land Satellite (Landsat). In estuarine marshes, L-band SAR and C-band ASAR provided accurate flood extent information when depths averaged at least 80 cm, but only L-band SAR provided consistent subcanopy detection when depths averaged 50 cm or less. Low performance of inundation mapping based on C-band ASAR was attributed to an apparent inundation detection limit (>30 cm deep) in tall Spartina alterniflora marshes, a possible canopy collapse of shoreline fresh marsh exposed to repeated storm-surge inundations, wind-roughened water surfaces where water levels reached marsh canopy heights, and relatively high backscatter in the near-range portion of the SAR imagery. A TM-based vegetation index of live biomass indicated that the severity of marsh dieback was linked to differences in dominant species. The severest impacts were not necessarily caused by longer inundation but rather could be caused by repeated exposure of the palustrine marsh to elevated salinity floodwaters. Differential impacts occurred in estuarine marshes. The more brackish marshes on average suffered higher impacts than the more saline marshes, particularly the nearshore coastal marshes occupied by S. alterniflora.

Journal of Coastal Research