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Standard operating procedures for collection of soil and sediment samples for the Sediment-bound Contaminant Resiliency and Response (SCoRR) strategy pilot study
An understanding of the effects on human and ecological health brought by major coastal storms or flooding events is typically limited because of a lack of regionally consistent baseline and trends data in locations proximal to potential contaminant sources and mitigation activities, sensitive ecosystems, and recreational facilities where exposures are probable. In an attempt to close this gap, the U.S. Geological Survey (USGS) has implemented the Sediment-bound Contaminant Resiliency and Response (SCoRR) strategy pilot study to collect regional sediment-quality data prior to and in response to future coastal storms. The standard operating procedure (SOP) detailed in this document serves as the sample-collection protocol for the SCoRR strategy by providing step-by-step instructions for site preparation, sample collection and processing, and shipping of soil and surficial sediment (for example, bed sediment, marsh sediment, or beach material). The objectives of the SCoRR strategy pilot study are (1) to create a baseline of soil-, sand-, marsh sediment-, and bed-sediment-quality data from sites located in the coastal counties from Maine to Virginia based on their potential risk of being contaminated in the event of a major coastal storm or flooding (defined as Resiliency mode); and (2) respond to major coastal storms and flooding by reoccupying select baseline sites and sampling within days of the event (defined as Response mode). For both modes, samples are collected in a consistent manner to minimize bias and maximize quality control by ensuring that all sampling personnel across the region collect, document, and process soil and sediment samples following the procedures outlined in this SOP. Samples are analyzed using four USGS-developed screening methods—inorganic geochemistry, organic geochemistry, pathogens, and biological assays—which are also outlined in this SOP. Because the SCoRR strategy employs a multi-metric approach for sample analyses, this protocol expands upon and reconciles differences in the sample collection protocols outlined in the USGS “National Field Manual for the Collection of Water-Quality Data,” which should be used in conjunction with this SOP. A new data entry and sample tracking system also is presented to ensure all relevant data and metadata are gathered at the sample locations and in the laboratories.
A standard operating procedure for the surgical implantation of transmitters in juvenile salmonids
Biotelemetry is a useful tool to monitor the movements of animals and is widely applied in fisheries research. Radio or acoustic technology can be used, depending on the study design and the environmental conditions in the study area. A broad definition of telemetry also includes the use of Passive Integrated Transponder (PIT) tags, either separately or with a radio or acoustic transmitter. To use telemetry, fish must be equipped with a transmitter. Although there are several attachment procedures available, surgical implantation of transmitters in the abdominal cavity is recognized as the best technique for long-term telemetry studies in general (Stasko and Pincock, 1977; Winter, 1996; Jepsen, 2003), and specifically for juvenile salmonids, Oncorhynchus spp. (Adams and others, 1998a, 1998b; Martinelli and others, 1998; Hall and others, 2009). Studies that use telemetry assume that the processes by which the animals are captured, handled, and tagged, as well as the act of carrying the transmitter, will have minimal effect on their behavior and performance. This assumption, commonly stated as a lack of transmitter effects, must be valid if telemetry studies are to describe accurately the movements and behavior of an entire population of interest, rather than the subset of that population that carries transmitters. This document describes a standard operating procedure (SOP) for surgical implantation of radio or acoustic transmitters in juvenile salmonids. The procedures were developed from a broad base of published information, laboratory experiments, and practical experience in tagging thousands of fish for numerous studies of juvenile salmon movements near Columbia River and Snake River hydroelectric dams. Staff from the Western Fisheries Research Center's Columbia River Research Laboratory (CRRL) frequently have used telemetry studies to evaluate new structures or operations at hydroelectric dams in the Columbia River Basin, and these evaluations typically require large numbers of tagged fish. For example, a study conducted at the dams on the Columbia River and funded by the U.S. Army Corps of Engineers required tagging and monitoring of 40,000 juvenile salmon during a 3-month migration period (Counihan and others, 2006a, 2006b; Perry and others, 2006). To meet the demands of such a large study, the authors and CRRL staff refined the SOP to increase efficiency in the tagging process while maintaining high standards of fish care. The SOP has been used in laboratory and field settings for more than 15 years, and consistently has produced low mortality rates (<1 percent) and transmitter loss rates (<0.01 percent) in the 24-36 hours after tagging. In addition to describing the detailed surgical procedures required for transmitter implantation, this document provides guidance on fish collection, handling and holding, and the release of tagged fish. Although often overlooked, or at least underemphasized, these processes can have a large impact on the outcome of the tagging procedure. Stress associated with the individual steps in handling and tagging can be cumulative and lethal (Maule and others, 1988; Wedemeyer and others, 1990; Portz and others, 2006), so the goal is to provide the best possible fish care at every step in order to manage the overall effect on study fish.
Developing consistent Landsat data sets for large area applications: the MRLC 2001 protocol
One of the major efforts in large area land cover mapping over the last two decades was the completion of two U.S. National Land Cover Data sets (NLCD), developed with nominal 1992 and 2001 Landsat imagery under the auspices of the MultiResolution Land Characteristics (MRLC) Consortium. Following the successful generation of NLCD 1992, a second generation MRLC initiative was launched with two primary goals: (1) to develop a consistent Landsat imagery data set for the U.S. and (2) to develop a second generation National Land Cover Database (NLCD 2001). One of the key enhancements was the formulation of an image preprocessing protocol and implementation of a consistent image processing method. The core data set of the NLCD 2001 database consists of Landsat 7 Enhanced Thematic Mapper Plus (ETM+) images. This letter details the procedures for processing the original ETM+ images and more recent scenes added to the database. NLCD 2001 products include Anderson Level II land cover classes, percent tree canopy, and percent urban imperviousness at 30-m resolution derived from Landsat imagery. The products are freely available for download to the general public from the MRLC Consortium Web site at http://www.mrlc.gov.
Outer Continental Shelf Oil and Gas Information Program: Atlantic index (December 1980 - June 1981)
In an effort to develop the oil and gas resources of the Outer Continental Shelf (OCS), the United States currently conducts a leasing program for these resources. The Secretary of the Department of the Interior has been designated by the Outer Continental Shelf Lands Act of 1953 (43 U.S.C. 1331-1343), as amended by the Outer Continental Shelf Lands Acts of 1978, to manage and regulate many of the activities that relate to the leasing, exploration, development, and production of the OCS mineral resources. Many of the Secretary's responsibilities have been delegated to the Bureau of Land Management (BLM) and the U.S. Geological Survey (USGS). Under OCS Lands Act an Outer Continental Shelf Oil and Gas Information Program was created and is managed by the BLM and the USGS. Authorities and operating procedures are detailed in the Code of Federal Regulations at 30 CFR 252 and 43 CFR 3300. Under this program regional indexes are prepared by the U.S. Geological Survey in conjunction with the Bureau of Land Management, and they list all relevant, actual, or proposed programs, plans, reports, environmental impact statements, and other lease sale information. The indexes are provided on a regular basis to affected States and, upon request, to local governments.
Reflections on writing hydrologic reports
Reporting of scientific work should be characterized by a logical argument that is developed through presentation of the problem, tabulation and display of data pertinent to the problem , and testing and interpretation of the data to prove hypotheses that address the problem. Organization of the report is vital to developing this logical argument: it provides structure, continuity, logic, and emphasis to the presentation. Each part of the report serves a specific function and each is linked by a connecting logic, the logical argument of the report. Each scientific report normally has a title, table of contents, abstract, introduction, body (of the report), and summary and/or conclusions. Organization of sections within the body of the report is exactly parallel to overall organization; subjects presented in the section title are developed by logical subdivisions and pertinent discussion. The summary and/or conclusions section culminates the logical argument of the report by drawing together and quantitatively reiterating the principal conclusions developed in the discussion. Supplemental information on report content, background of the study, additional data or details on procedures, and other information of interest to the reader is presented in the foreward or preface, list of illustrations or tables, glossaries, and appendixes. (Lantz-PTT)
Computation of records of streamflow at control structures
Traditional methods of computing streamflow records on large, low-gradient streams require a continuous record of water-surface slope over a natural channel reach. This slope must be of sufficient magnitude to be accuratly measured with available stage measuring devices. On highly regulated streams, this slope approaches zero during periods of low flow and accurate measurement is difficult. Methods are described to calibrate multipurpose regulating control structures to more accurately compute streamflow records on highly-regulated streams. Hydraulic theory, assuming steady, uniform flow during a computational interval, is described for five different types of flow control. The controls are: Tainter gates, hydraulic turbines, fixed spillways, navigation locks, and crest gates. Detailed calibration procedures are described for the five different controls as well as for several flow regimes for some of the controls. The instrumentation package and computer programs necessary to collect and process the field data are discussed. Two typical calibration procedures and measurement data are presented to illustrate the accuracy of the methods. (Woodard-USGS)
Geology of the Eymir iron mine, Edremit, Turkey
The Eymir mine near Edremit on Turkey's Aegean coast (long 27?30'E.,1at 39?36'N.) was investigated as part of the Maden Tetkik ve Arama Enstitutsu (MTA)-U. S. Geological Survey (USGS) mineral exploration and training project, for the purpose of increasing the known mineral reserves. Geologic mapping of the mine area indicates that hematite is restricted to argillized, silicified, and pyritized dacite and possibly andesite. Hematite is present as massive replacements, impregnations, disseminations, and fracture fillings. Most of the upper part of the iron deposit consists of a breccia composed mostly of silicifiled dacite fragments in a hematite matrix. The iron deposit was apparently formed in three steps: 1. Argillation, silicification, and pyritization of the andesitic lava and dacite units as a result of a regional intrusion. 2. Intrusion of the Dere Oren dacite stock, with associated faulting, fracturing, and breccia formation at the surface. 3. Deposition of hematite by oxidation of pyrite, and transfer of iron via fractures and faults by hydrothermal or meteoric fluids. The Eymir iron deposit is a blanketlike deposit on the crest of the Sivritepe-Eymir ridge. It is 1300 meters long, 80 to 450 meters wide, and has an average thickness of 18.6 meters. Drill holes in the deposit show the iron content to range from 32.0 to 57.6 percent, and to average 46.5 percent. Most of the gangue is silica, and an arsenic impurity averaging 0.39 percent is present. Most of the deposit cannot be utilized as iron ore because of low iron content, high silica content, and high arsenic content. Ore-dressing tests have shown that it is feasible to concentrate the low-grade material, producing a concentrate having increased iron content and reduced silica content. Tests have shown also that the arsenic content of the ore can be reduced substantially by sintering. Further tests and economic feasibility studies are necessary to determine whether an economic marketable iron ore can be produced. If such studies indicate the technical and economic feasibility of utilizing all the Eymir iron deposit, detailed additional studies are recommended including: 1. A detailed drilling and sampling program to include 60 drill holes averaging 40 meters in depth and detailed sampling of mine dumps. 2. Pilot-plant testing of concentration and sintering procedures. 3. A detailed pre-investment economic feasibility study.
Radiometric recalibration procedure for Landsat-5 Thematic Mapper data
The Landsat-5 (L5) satellite was launched on March 01, 1984, with a design life of three years. Incredibly, the L5 Thematic Mapper (TM) has collected data for 23 years. Over this time, the detectors have aged, and its radiometric characteristics have changed since launch. The calibration procedures and parameters have also changed with time. Revised radiometric calibrations have improved the radiometric accuracy of recently processed data; however, users with data that were processed prior to the calibration update do not benefit from the revisions. A procedure has been developed to give users the ability to recalibrate their existing Level 1 (Ll) products without having to purchase reprocessed data from the U.S. Geological Survey (USGS). The accuracy of the recalibration is dependent on the knowledge of the prior calibration applied to the data. The “Work Order” File, included with standard National Land Archive Production System (NLAPS) data products, gives parameters that define the applied calibration. These are the Internal Calibrator (IC) calibration parameters or the default prelaunch calibration, if there were problems with the IC calibration. This paper details the recalibration procedure for data processed using IC, in which users have the Work Order file.
Kriging: Understanding allays intimidation
In 1938 Daniel Gerhardus "Danie" Krige obtained an undergraduate degree in mining engineering and started a brilliant career centered on analyzing the gold and uranium mines in the Witwatersrand conglomerates of South Africa. He became interested in the disharmony between the poor reliability of reserve estimation reports and the magnitude of the economic decisions that were based on these studies. Back at the University of Witwatersrand, he wrote a master's thesis that began a revolution in mining evaluation methods. Krige was not alone in his research. Another mining engineer, Georges Matheron, a Frenchman, thought space data analysis belonged in a separate discipline, just as geophysics is a separate branch from physics. He named the new field geostatistics. Kriging is the name given in geostatistics to a collection of generalized linear regression techniques for the estimation of spatial phenomena. Pierre Carlier, another Frenchman, coined the term krigeage in the late 1950s to honor Krige's seminal work. Matheron anglicized the term to kriging when he published a paper for English-speaking readers. France dominated the development and application of geostatistics for several years. However, geostatistics in general, and kriging in particular, are employed by few and are regarded with apprehension by many. One of the possible applications of kriging is in computer mapping. Computer contouring methods can be grouped into two families: triangulation and gridding. The former is a direct procedure in which the contour lines are computed straight from the data by partitioning the sampling area into triangles with one observation per vertex. Kriging belongs in the gridding family. A grid is a regular arrangement of locations or nodes. In the gridding method the isolines are determined from interpolated values at the nodes. The difference between kriging and other weighting methods is in the calculation of the weights. Even for the simplest form of kriging, the calculations are more demanding. The kriging system of equations differs from classical regression in that the observations are allowed to be correlated and that neither the estimate nor the observations are necessarily points - they may have a volume, shape, and orientation. The mean square error is the average of the squares of the differences between the true and the estimated values. Simple kriging, the most basic form of kriging in that the system of equations has the fewest terms, requires the phenomena to have a constant and known mean. The next step up, ordinary kriging, does not require knowledge of the population mean. The external drift method, universal kriging, and intrinsic kriging go even further by allowing fluctuations in the mean. In practice, estimation by kriging is not as difficult to handle as it may look at first glance. In these days of high technology, all the details in the procedure are coded into computer programs. When properly used, kriging has several appealing attributes, the most important being that it does the work more accurately. By design, kriging provides the weights that result in the minimum mean square error. And yes, there have been people who have tested its superiority with real data. Practice has consistently confirmed theory. Kriging is also robust. Within reasonable limits, kriging tends to persist in yielding correct estimates even when the user selects the wrong model, misspecifies parameters, or both. This property should be an incentive for the novice to try the method. Gross misuse of kriging, though, can lead to poor results, worse even than those produced by alternative methods. Kriging has evolved and continues to expand to accommodate the estimation of increasingly demanding realities. Conclusions Theory and practice show that computer contour maps generated using kriging have the least mean square estimation error. In addition, the method provides information to assess the reliability of the maps.
Hydratools manual version 1.0, documentation for a MATLAB ® -based post-processing package for the Sontek Hydra
The Sediment Transport Instrumentation Group (STG) at the U.S. Geological Survey (USGS) Woods Hole Science Center has a long-standing comitment to providing scientists with high quality oceanographic data. To meet this commitment, STG personnel are vigilant in checking data as well as hardware for signs of instrument malfunction. STG data sets are accompanied by processing histories to detail data processing procedures that may have modified the natural data signal while removing noise from the data. The history also allows the data to be reprocessed in the ligth of new insight into instrument function and moored conditions. This toolbox was compiled to meet these data quality commitments for data generated by Sontek Hydra systems using both ADV and PCADP probes. In the mid 1900's, the USGS Coastal and Marine Program began frequent deployments of Sontek Hydra systems in support of projects in estuaries, coastal, and continental shelf regions nationwide. Hydra data sets are large and complex in structure, and existing processing and editing tools consisted of fragments of MATLAB code written by USGS scientists to satisfy personal research needs. This code did not meet STG quality control criteria. This toolbox permits engineers and scientists to monitor data quality by: 1. processing data with interactive critical review; 2. preserving data quality indicators; 3. preserving minimally processed and partially processed versions of data sets. STG usually deploys ADV and PCADP probes configured as downward looking, mounted on bottom tripods, with the objective of measuring high-resolution near-bed currents. The velocity profiles are recorded with minimal internal data processing. Also recorded are parameters such as temperature, conductivity, optical backscatter, light transmission, and high frequency pressure. Sampling consists of high-frequency bursts(1–10 Hz) bursts of long duration (5–30 minutes) at regular and recurring intervals for a duration of 1 to 6 months. The result is very large data files, often 500 MB per Hydra, per deployment, in Sontek's compressed binary format. This section introduces the Hydratools toolbox and provides information about the history of the system's development. The USGS philosophy regarding data quality is discussed to provide an understating of the motivation for creating the system. General information about the following topics will also be discussed: hardware and software required for the system, basic processing steps, limitations of program usage, and features that are unique to the programs.
System characterization report on the Gaofen-1
Executive Summary This report addresses system characterization of Gaofen-1 and is part of a series of system characterization reports produced and delivered by the U.S. Geological Survey Earth Resources Observation and Science Cal/Val Center of Excellence in 2020. These reports present the detail methodology and procedures for characterization; present technical and operational information about the specific sensing system being evaluated; and provide a summary of test measurements, data retention practices, data analysis results, and conclusions. Gaofen represents a series of Chinese high-resolution Earth observation satellites. More than 12 satellites have been launched in the Gaofen series, beginning with Gaofen-1 in 2013. Satellites within the series have varying infrared, radar, and optical imaging capabilities. The primary goal for the satellite is to provide near real-time observations for climate change monitoring, geographical mapping, precision agriculture support, environmental and resource surveying, and disaster prevention. More information on Chinese satellites and sensors is available within the “2020 Joint Agency Commercial Imagery Evaluation—Remote Sensing Satellite Compendium” and at http://www.cnsageo.com/#/detailIndex?secondIndex=2&id=3&code=8 . The Earth Resources Observation and Science Cal/Val Center of Excellence System Characterization team completed data analyses to characterize the geometric (interior and exterior), radiometric, and spatial performances. Results of these analyses indicate that Gaofen-1 has an interior geometric performance of −0.48 meter (m) (−0.03 pixel) northing and 0.42 m (0.03 pixel) easting offset for band 1, −0.99 m (−0.06 pixel) northing and −0.38 m (−0.02 pixel) easting offset for band 2, −0.45 m (−0.03) northing and 0.83 m (0.05 pixel) easting offset for band 3, −3.20 m (−0.20 pixel) northing and 1.44 m (0.09 pixel) easting offset for band 4 in band-to-band registration. Similarly, Gaofen-1 has an exterior geometric performance of 7.50 m (0.48 pixel) easting and 109.50 m (7.30 pixels) northing offset in comparison to the Landsat 8 Operational Land Imager; a radiometric performance in the range of −0.014 to 0.149 (absolute reflective difference); and a spatial performance in the range of 1.1 to 2.0 pixels at full width at half maximum, with a modulation transfer function at a Nyquist frequency in the range of 0.040 to 0.250.
Workplan for U.S. Geological Survey hydrologic data-collection and support activities on Fort Wainwright, Alaska, 1994-97
The U.S. Army Alaska is responsible for environmental activities on Fort Wainwright near Fairbanks, Alaska. In order to better meet the needs of environmental investigations, the Army requires geohydrologic information about the Fort Wainwright area. Since 1994, the U.S. Geological Survey has been working in cooperation with the U.S. Army Alaska and the U.S. Army Corps of Engineers to investigate the geohydrology of the Fort Wainwright area. The primary objectives of the study are to collect basic ground-water and surface-water data and to support ongoing environmental investigations by other agencies. This report is the workplan describing the technical methods used by the USGS to meet these objectives. It includes details on field procedures, data collection, and analyses of water samples.
General procedure for gaging streams
This chapter briefly describes the objectives and procedures used in obtaining streamflow records. It is considered an introduction to other chapters on surface-water techniques which treat individual procedures in greater detail.
Altitude, depth, and thickness of the Galena-Platteville Bedrock Unit in the subcrop area of Illinois and Wisconsin
The Galena-Platteville bedrock unit is a carbonate deposit of Ordovician age, composed of the Galena and Platteville Groups in Illinois and the Sinnippee Group in Wisconsin. It is the uppermost bedrock unit (subcrop) in most of northern Illinois and southern and eastern Wisconsin. The subcrop area is shaded in figure 1 of sheet 1 (Batten and others, 1997). The unit is predominately dolomite, with limestone in some areas, and has a weathered surface. Across the subcrop area, the hydrologic characteristics of the bedrock unit vary substantially. The bedrock unit may be either a confining unit or an aquifer. In areas where the Galena-Platteville bedrock unit is an aquifer, the unit is a dependable source of water for many private wells and some municipal-water-supply systems. Ground water in the Galena-Platteville bedrock aquifer is susceptible to contamination because the bedrock unit is near land surface in much of the study area, and the fractures in the unit allow rapid movement of water providing limited capacity to attenuate contaminants. The subcrop (study) area covers approximately 7,850 square miles in northern Illinois and Wisconsin. In the study area, volatile organic compounds and other contaminants have been detected in the aquifer at various sites (Mills, 1993; Kay and others, 1994). Many sources of contaminants, including landfills and industrial facilities, are known or suspected. In order to determine the possible effects of contamination on the ground-water supply, an understanding of the regional hydrogeologic framework of the Galena-Platteville bedrock unit is needed. Published and unpublished map and point data describing the geologic properties of the Galena-Platteville bedrock unit are available from many sources. The U.S. Geological Survey (USGS), in cooperation with the U.S. Environmental Protection Agency (USEPA), has selected and compiled a large portion of the available data to create computer data bases and maps. The objective of this effort is to compile and publish these data in a series of reports (U.S. Geological Survey Water-Resources Investigations Reports (WRIR) 974054-A, WRIR 97-4054-B, WRIR 97-4054-C). This is the third in that series of reports. The report describes the altitude, thickness, and depth from land surface of the subcrop area of the Galena-Platteville bedrock unit. The report series will enable investigators involved in site-specific studies within the subcrop area to understand the regional geologic framework of the unit and to find additional reference sources. This report consists of four sheets that show the altitude (sheet 1), depth from land surface (sheet 2), total thickness (sheet 3), and location of altitude data (sheet 4) of the lithologic units that constitute the Galena-Platteville bedrock unit within the subcrop area. The sheets also show major known geologic features within the Galena-Platteville study area in Illinois and Wisconsin. A geographic information system (GIS) was used to generate data layers (coverages) from point data and from published and unpublished contour maps at various scales and detail. Standard GIS procedures were used to change the coverages into the maps shown on the sheets presented in this report. A list of references for the data used to prepare the maps is provided.
The surface elevation table and marker horizon technique: A protocol for measuring wetland elevation dynamics, narrative (Version 2.0)
The National Park Service (NPS), in response to the growing evidence and awareness of the effects of climate change on federal lands, determined that monitoring wetland elevation change is a top priority in North Atlantic Coastal parks (Stevens et al. 2010). As a result, the NPS Northeast Coastal and Barrier Network (NCBN) in collaboration with colleagues from the U.S. Geological Survey (USGS) and the National Oceanic and Atmospheric Administration (NOAA) have developed a protocol for monitoring wetland elevation change and other processes important for determining the viability of wetland communities. Although focused on North Atlantic Coastal parks, this document is applicable to all coastal and inland wetland regions. Wetlands exist within a narrow range of elevation that is influenced by local hydrologic conditions. For tidally influenced coastal wetlands, local hydrologic conditions may be changing as sea levels continue to rise. As sea level rises, coastal wetland systems may either a) build elevation to maintain favorable hydrologic conditions for their survival or b) become increasingly inundated beyond their physiological tolerance resulting in an eventual conversion to open water. A better understanding of these processes will help to determine the present and future viability of coastal wetlands managed by the NPS and can help address measures to ensure these communities exist into the future. This protocol provides the reader with instructions and guidelines on designing a monitoring plan or study to: Quantify elevation change in wetlands with the Surface Elevation Table (SET); understand the processes that influence elevation change, including vertical accretion (SET and Marker Horizon methods); survey the wetland surface and SET mark to a common reference datum to allow for comparing sample stations to each other and to local tidal datums; survey the SET mark to monitor its relative stability; and establish water level equipment to characterize the hydrology and tidal datums for a particular wetland site or sites. The protocol is divided into two documents: The narrative (this document) presents an overview of all aspects of monitoring wetland elevation dynamics, and a document of Standard Operating Procedures (SOPs) with detailed instructions on the design, installation, data collection, and data management in support of monitoring changes in wetland elevation.
Thermal detectability of subsurface water ice on Mars: A comparative analysis for the Subsurface Water Ice Mapping (SWIM) Project
We have developed a new global map of shallow ground ice distribution, SWIM23, based on Mars Global Surveyor Thermal Emission Spectrometer data and made systematic comparisons between this new map and two similar, previously developed data products. We have explored the origin of differences between the three ice maps by detailing technical and procedural differences in their development, by making global pixel-by-pixel comparisons, and by carrying out a series of one-dimensional thermal simulations to explore fundamental physical limitations of thermal ice-detection techniques. These efforts and the production of a composite thermal ice-consistency map supported integration of multiple geophysical data products relevant to ice detection in the upper meter of the Martian regolith into the larger Mars Subsurface Water Ice Mapping project. Our work also highlights fundamental physical limitations to thermal ice detection as a technique, particularly the rapid fall-off in ice detection sensitivity at depths >30 cm, which produces maximum uncertainty in the presence and depth of ice within regions preferred for potential human landing sites. A future Mars orbiter mission designed to detect ice and support crewed landing site selection in the midlatitude region should give payload priority to an instrument capable of probing the 1–5 m depth range (i.e., a high-frequency radar), over a next-generation thermal spectrometer, which is unlikely to offer clarity on ice table depths or lateral continuity of the ice table in the locations of highest interest.
Guidelines for the field evaluation of desert tortoise health and disease
Field evaluation of free-ranging wildlife requires the systematic documentation of a variety of environmental conditions and individual parameters of health and disease, particularly in the case of rare or endangered species. In addition, defined criteria are needed for the humane salvage of ill or dying animals. The purpose of this paper is to describe, in detail, the preparation, procedures, and protocols we developed and tested for the field evaluation of wild desert tortoises ( Gopherus agassizii ). These guidelines describe: preparations for the field, including developing familiarity with tortoise behavior and ecology, and preparation of standardized data sheets; journal notes to document background data on weather conditions, temperature, rainfall, locality, and historic and recent human activities; procedures to prevent the spread of disease and parasites; data sheets for live tortoises to record tortoise identification, location, sex, body measurements and activity; health profile forms for documenting and grading physical abnormalities of tortoise posture and movements, general condition (e.g., lethargy, cachexia), external parasites, and clinical abnormalities associated with shell and upper respiratory diseases; permanent photographic records for the retrospective analysis of progression and regression of upper respiratory and eye diseases, analysis of shell lesions and evaluation of growth and age; and indications and methods for salvaging ill or dying tortoises for necropsy evaluation. These guidelines, tested on 5,000 to 20,000 tortoises over a 10 to 27 yr period, were designed to maximize acquisition of data for demographic, ecological, health and disease research projects; to reduce handling and stress of individual animals; to avoid spread of infectious disease; to promote high quality and consistent data sets; and to reduce the duration and number of field trips. The field methods are adapted for desert tortoise life cycle, behavior, anatomy, physiology, and pertinent disease; however the model is applicable to other species of reptiles. Comprehensive databases of clinical signs of disease and health are crucial to research endeavors and essential to decisions on captive release, epidemiology of disease, translocation of wild tortoises, breeding programs, and euthanasia.