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At least 37 records · Page 2Linked to original sources

At the end of the line: independent overwater colonizations of the Solomon Islands by a hyperdiverse trans-Wallacean lizard lineage (Cyrtodactylus: Gekkota: Squamata)

The islands of East Melanesia have generated key insights into speciation processes and community assembly. However, when and how these islands began to form, emerge and accumulate endemic taxa remains poorly understood. Here, we show that two divergent lineages within the world’s most diverse genus of geckos ( Cyrtodactylus ) occur in the Solomon Islands. One large-bodied species is nested within a radiation from far eastern New Guinea, with inferred colonization, spread and diversification since the late Miocene. In contrast, a newly sampled and relatively small species with a restricted distribution on Guadalcanal Island is a relict that diverged from extant congeners around the early to mid-Miocene. Similar Miocene divergences from extralimital relatives have been inferred for other endemic bird, bat and lizard lineages in East Melanesia. In contrast, across all lineages (including divergent relictual lineages), there is little evidence for endemic in situ diversification within East Melanesia predating the Pliocene (especially in the Solomon Islands). While some East Melanesian endemic lineages may have origins on progenitor islands during the Miocene or even earlier, current evidence suggests the in situ diversification and assembly of extant biological communities commenced around the end of the Miocene.

Zoological Journal of the Linnean Society

An experimental investigation of chemical communication in the polar bear

The polar bear ( U rsus maritimus ), with its wide-ranging movements, solitary existence and seasonal reproduction, is expected to favor chemosignaling over other communication modalities. However, the topography of its Arctic sea ice habitat is generally lacking in stationary vertical substrates routinely used for targeted scent marking in other bears. These environmental constraints may have shaped a marking strategy, unique to polar bears, for widely dispersed continuous dissemination of scent via foot pads. To investigate the role of chemical communication, pedal scents were collected from free-ranging polar bears of different sex and reproductive classes captured on spring sea ice in the Beaufort and Chukchi seas, and presented in a controlled fashion to 26 bears in zoos. Results from behavioral bioassays indicated that bears, especially females, were more likely to approach conspecific scent during the spring than the fall. Male flehmen behavior, indicative of chemosignal delivery to the vomeronasal organ, differentiated scent donor by sex and reproductive condition. Histologic examination of pedal skin collected from two females indicated prominent and profuse apocrine glands in association with large compound hair follicles, suggesting that they may produce scents that function as chemosignals. These results suggest that pedal scent, regardless of origin, conveys information to conspecifics that may facilitate social and reproductive behavior, and that chemical communication in this species has been adaptively shaped by environmental constraints of its habitat. However, continuously distributed scent signals necessary for breeding behavior may prove less effective if current and future environmental conditions cause disruption of scent trails due to increased fracturing of sea ice.

Journal of Zoology

Phylogeography of declining relict and lowland leopard frogs in the desert Southwest of North America

We investigated the phylogeography of the closely related relict leopard frog Rana onca (= Lithobates onca ) and lowland leopard frog Rana yavapaiensis (= Lithobates yavapaiensis ) – two declining anurans from the warm‐desert regions of south‐western North America. We used sequence data from mitochondrial DNA (mtDNA) to assess 276 individuals representing 30 sites from across current distributions. Our analysis supports a previously determined phylogenetic break between these taxa, and we found no admixing of R. onca and R. yavapaiensis haplotypes within our extensive sampling of sites. Our phylogeographic assessment, however, further divided R. yavapaiensis into two distinct mtDNA lineages, one representing populations across Arizona and northern Mexico and the other a newly discovered population within the western Grand Canyon, Arizona. Estimates of sequence evolution indicate a possible Early Pleistocene divergence of R. onca and R. yavapaiensis , followed by a Middle Pleistocene separation of the western Grand Canyon population of R. yavapaiensis from the main R. yavapaiensis clade. Phylogeographic and demographic analyses indicate population or range expansion for R. yavapaiensis within its core distribution that appears to predate the latest glacial maximum. Species distribution models under current and latest glacial climatic conditions suggest that R. onca and R. yavapaiensis may not have greatly shifted ranges.

Arizona, Nevada, Utah, New Mexico

Case 3693 Cryptodacus Hendel, 1914 (Insecta: Diptera: Tephritidae): Proposed suppression of Cryptodacus Gundlach, 1862 (Reptilia, Serpentes, Colubridae)

The purpose of this application, under Article 23.9.3, is to conserve current usage of the well-established genus-group name Cryptodacus Hendel, 1914 for a genus of Neotropical fruit flies by suppression of the earlier, unused name Cryptodacus Gundlach, 1862 , currently a junior synonym of Arrhyton Günther, 1858, a genus of snakes, under the plenary power of the Commission, in the interest of nomenclatural stability. Cryptodacus Gundlach has not been used as a valid name since 1883, whereas Cryptodacus Hendel has been used in a significant body of literature relating to fruit fly systematics, morphology and phylogeny and is the currently used name in various name and molecular databases.

Bulletin of Zoological Nomenclature

Carnivore re-colonisation: Reality, possibility and a non-equilibrium century for grizzly bears in the southern Yellowstone ecosystem

Most large native carnivores have experienced range contractions due to conflicts with humans, although neither rates of spatial collapse nor expansion have been well characterised. In North America, the grizzly bear (Ursus arctos) once ranged from Mexico northward to Alaska, however its range in the continental USA has been reduced by 95-98%. Under the U. S. Endangered Species Act, the Yellowstone grizzly bear population has re-colonised habitats outside Yellowstone National Park. We analysed historical and current records, including data on radio-collared bears, (1) to evaluate changes in grizzly bear distribution in the southern Greater Yellowstone Ecosystem (GYE) over a 100-year period, (2) to utilise historical rates of re-colonisation to project future expansion trends and (3) to evaluate the reality of future expansion based on human limitations and land use. Analysis of distribution in 20-year increments reflects range reduction from south to north (1900-1940) and expansion to the south (1940-2000). Expansion was exponential and the area occupied by grizzly bears doubled approximately every 20 years. A complementary analysis of bear occurrence in Grand Teton National Park also suggests an unprecedented period of rapid expansion during the last 20-30 years. The grizzly bear population currently has re-occupied about 50% of the southern GYE. Based on assumptions of continued protection and ecological stasis, our model suggests total occupancy in 25 years. Alternatively, extrapolation of linear expansion rates from the period prior to protection suggests total occupancy could take > 100 years. Analyses of historical trends can be useful as a restoration tool because they enable a framework and timeline to be constructed to pre-emptively address the social challenges affecting future carnivore recovery. ?? 2004 The Zoological Society of London.

Idaho, Montana, Wyoming

Genome complexity in the coelacanth is reflected in its adaptive immune system

We have analyzed the available genome and transcriptome resources from the coelacanth in order to characterize genes involved in adaptive immunity. Two highly distinctive IgW-encoding loci have been identified that exhibit a unique genomic organization, including a multiplicity of tandemly repeated constant region exons. The overall organization of the IgW loci precludes typical heavy chain class switching. A locus encoding IgM could not be identified either computationally or by using several different experimental strategies. Four distinct sets of genes encoding Ig light chains were identified. This includes a variant sigma-type Ig light chain previously identified only in cartilaginous fishes and which is now provisionally denoted sigma-2. Genes encoding α/β and γ/δ T-cell receptors, and CD3, CD4, and CD8 co-receptors also were characterized. Ig heavy chain variable region genes and TCR components are interspersed within the TCR α/δ locus; this organization previously was reported only in tetrapods and raises questions regarding evolution and functional cooption of genes encoding variable regions. The composition, organization and syntenic conservation of the major histocompatibility complex locus have been characterized. We also identified large numbers of genes encoding cytokines and their receptors, and other genes associated with adaptive immunity. In terms of sequence identity and organization, the adaptive immune genes of the coelacanth more closely resemble orthologous genes in tetrapods than those in teleost fishes, consistent with current phylogenomic interpretations. Overall, the work reported described herein highlights the complexity inherent in the coelacanth genome and provides a rich catalog of immune genes for future investigations.

Journal of Experimental Zoology Part B: Molecular

Case 3853 – Eumeces niger Hombron & Jacquinot, 1853 (currently Emoia nigra) (Reptilia, Scincidae): proposed conservation of prevailing usage by setting aside a lectotype designation for Gongylus (Eumeces) freycineti Duméril & Bibron, 1839 (currently Emoia atrocostata freycineti)

The purpose of the present application, under Articles 74.1.1 and 81.1 of the Code, is to maintain consistent usage of the commonly used name Emoia nigra (Hombron & Jacquinot, 1853 ) by setting aside a lectotype designation for Gongylus ( Eumeces ) freycineti Duméril & Bibron, 1839 by Wells & Wellington in 1985 in favour of a later lectotype designation by Brown in 1991 .

The Bulletin of Zoological Nomenclature

T.D.A. Cockerell (1866–1948) of the University of Colorado: His contributions to the natural history of the California islands and the establishment of Channel Islands National Monument

Theodore Dru Alison Cockerell was a naturalist at the University of Colorado from 1904 to 1947 and studied botany, zoology, and paleontology in North and South America, Asia, Australia, Africa, and Europe. In the latter part of his career, he studied the California islands and published many papers on their natural history, 16 of them in four years (1937–1940). He made important contributions to the natural history of the islands in four distinct ways: entomology of the islands, including identification of a number of new species of bees; discovery of fossil marine invertebrate faunas and recognition that the zoogeography of the taxa reflects the position of the islands relative to converging cool and warm currents; discovery of abundant land snails, both living and in fossil form, and recognition that the fossils are in close stratigraphic association with mammoth fossils; and island biogeography, with considerations of species dispersal mechanisms and endemism. Newly discovered letters and memos also reveal that Cockerell played a pivotal role in the establishment of Channel Islands National Monument.

Western North American Naturalist

Catalog of type specimens of recent Crocodilia and Testudines in the National Museum of Natural History, Smithsonian Institution

The known type specimens of Crocodilia and Testudines in the collection of the Division of Amphibians and Reptiles, National Museum of Natural History, Smithsonian Institution, published through 2006 represent 93 names of taxa. The catalog presents a list of 249 type-specimen records consisting of 39 holotypes, 52 syntypes, 3 lectotypes, 2 neotypes, 132 paratypes, and 21 paralectotypes. The list is arranged alphabetically by family within Crocodilia and Testudines, and alphabetically by genus and species, as described originally within family. Each entry provides both original and current genus and species names, author(s), date of publication, abbreviated type citation, page of original description, and accompanying fi gures and plates (if any), current type status, USNM catalog number, number of specimens, specimen measurement(s), locality, collector, and date collected. Also included for each taxon is the published type locality, type material at other institutions, an etymology, and remarks on corrections or additional data for original type records, changes in type status, and information pertaining to lost, exchanged, or destroyed specimens. An index of scientific names follows the catalog.

Smithsonian Contributions to Zoology

A new species of tree hyrax (Procaviidae: Dendrohyrax) from West Africa and the significance of the Niger–Volta interfluvium in mammalian biogeography

Tree hyraxes ( Dendrohyrax ) are one of only three genera currently recognized in Procaviidae, the only extant family in the mammalian order Hyracoidea. Their taxonomy and natural history have received little attention in recent decades. All tree hyrax populations of Guineo-Congolian forests of Africa are currently treated as a single species, Dendrohyrax dorsalis , the western tree hyrax, but many other groups of mammals distributed across this large biome have been shown to consist of several different species, each restricted to a distinct biogeographical region. We analysed variation in loud-call structure, pelage colour, skull morphometrics and mitochondrial genomes in populations across much of the range of D. dorsalis . This integrative approach uncovered considerable cryptic variation. The population found between the Niger and Volta Rivers in West Africa is particularly distinctive, and we describe it herein as a new species. Our study highlights the need to revise the taxonomy of the genus Dendrohyrax in light of modern systematics and current understanding of its distribution. It also adds to a growing body of evidence that the Niger–Volta interfluvium has a distinct meso-mammal fauna. Unfortunately, the fauna of this region is under major threat and warrants much greater conservation attention.

Zoological Journal of the Linnean Society

Catalog of type specimens of recent mammals: Rodentia (Sciuromorpha and Castorimorpha) in the National Museum of Natural History, Smithsonian Institution

The type collection of Recent mammals in the Division of Mammals, National Museum of Natural History, Smithsonian Institution, contains 843 specimens bearing names of 820 species group taxa of Rodentia (Sciuromorpha and Castorimorpha) as of July 2011. This catalog presents a list of these holdings, which comprise 798 holotypes, 14 lectotypes, seven syntypes (30 specimens), and one neotype. In addition, we include three holotypes and 10 specimens that are part of syntype series that should be in the collection but cannot be found and three syntypes that were originally in this collection but are now known to be in other collections. One specimen that no longer has name-bearing status is included for the record. Forty-one of the names are new since the last type catalog. One new lectotype is designated. Suborders and families are listed as in Wilson and Reeder. Within families, currently recognized genera are arranged alphabetically. Within each currently recognized genus, accounts are arranged alphabetically by original published name. Information in each account includes original name and abbreviated citation thereto, current name if other than original, citation for first use of current name combination for the taxon (or new name combination if used herein for the first time), type designation, U.S. National Museum catalog number(s), preparation, age and sex, type locality, date of collection and name of collector, collector’s original number, and comments or additional information as appropriate. Digital photographs of each specimen serve as a condition report and will be linked to each electronic specimen record.

Smithsonian Contributions to Zoology

Stable foraging areas and variable chick diet in Cassin's auklets (Ptychoramphus aleuticus) off southern California

Planktivorous seabirds readily respond to changes in marine ecosystems and have the ability to integrate information regarding variability in abundance, availability, and community composition of key prey resources. We studied the foraging and breeding ecology of the Cassin's auklet, Ptychoramphus aleuticus (Pallas, 1811), off southern California during three breeding seasons (1999-2001), when large intra- and inter-annual variability occurred in local oceanographic conditions during a prolonged La Nina event. Radio-marked parents used consistent core foraging areas within 30 km of their colony, aggregated in shelf waters (< 200 m depth), and occasionally foraged in deeper waters. Parents delivered primarily euphausiids, pelagic larval-juvenile fishes, and minor amounts of cephalopods and other crustaceans. Whereas the euphausiid Thysanoessa spinifera Holmes, 1900 was most important during 1999 and 2001, Euphausia pacifica Hansen, 1911 replaced adult T. spinifera in 2000 after an anomalous eastward inflection of the California Current occurred near the auklets' foraging area. Differences in chick diets, however, did not significantly influence fledging success and growth among first chicks, but the proportion of pairs successfully fledging an alpha chick and initiating a second clutch was exceptional in 1999 (63%) and 2000 (75%), and less in 2001 (7%). We suggest that dietary composition was influenced by modified prey availability driven in part by fluctuations in regional upwelling and circulation. ?? 2004 NRC Canada.

Canadian Journal of Zoology

Patterns of seabird and marine mammal carcass deposition along the central California coast, 1980-1986

At monthly intervals from February 1980 through December 1986, a 14.5-km section of central California coastline was systematically surveyed for beach-cast carcasses of marine birds and mammals. Five hundred and fifty-four bird carcasses and 194 marine mammal carcasses were found. Common murres, western grebes, and Brandt's cormorants composed 45% of the bird total. California sea lions, sea otters, and harbor seals composed 90% of the mammal total. Several factors appeared to affect patterns of carcass deposition. The El Niño – Southern Oscillation (ENSO) of 1982–1983 was the dominant influence in terms of interannual variation in carcass deposition. During this ENSO, 56% of the seabirds and 48% of the marine mammals washed ashore. Patterns of intra-annual variation were species specific and were related to animal migration patterns, reproduction, and seasonal changes in weather. Nearshore currents and winds influenced the general area of carcass deposition, while beach substrate type and local patterns of sand deposition influenced the location of carcass deposition on a smaller spatial scale. Weekly surveys along a 1.1-km section of coastline indicated that 62% of bird carcasses and 41% of mammal carcasses remained on the beach less than 9 days. Cause of death was determined for only 8% of the carcasses. Oiling was the most common indication of cause of death in birds (6%). Neonates composed 8% of all mammal carcasses.

Canadian Journal of Zoology

Hidden in the hills: Phylogeny of the freshwater mussel genus Alasmidonta (Bivalvia: Unionidae) and description of a new species

Inaccurate taxonomy can lead to species in need of conservation being overlooked, which makes revisionary systematics crucially important for imperilled groups. The freshwater mussel genus Alasmidonta is one such group in need of study. Here, we take a multilocus phylogenetic approach to assess species-level taxonomy of Alasmidonta and test monophyly of this genus. Phylogenetic inference resulted in polyphyly of Alasmidonta . Lasmigona , which was included to test monophyly of Alasmidonta , was also polyphyletic. Species delimitation methods disagreed about whether Alasmidonta arcula , Alasmidonta triangulata and Alasmidonta undulata are distinct species, but all delimitation methods agreed that Alasmidonta harbours an undescribed species that would be considered Alasmidonta varicosa under current taxonomy. Given conflict among species delimitation methods and geographical separation, we maintain the current taxonomy for A. arcula and A. triangulata . The undescribed species is restricted to rivers of the Uwharrie Mountains region in North Carolina, USA that flow into the Pee Dee River from the east and can be distinguished morphologically from A. varciosa by higher and wider placed adductor mussels and a hooked pseudocardinal tooth. We offer insights into how supraspecific taxonomy of subtribe Alasmidontina might be resolved and formally describe the lineage from the Uwharrie Mountains region as Uwharrie elktoe, Alasmidonta uwharriensis sp. nov.

North Carolina

Systematics of the Platyrrhinus helleri species complex (Chiroptera: Phyllostomidae), with descriptions of two new species

Platyrrhinus is a diverse genus of small to large phyllostomid bats characterized by a comparatively narrow uropatagium thickly fringed with hair, a white dorsal stripe, comparatively large inner upper incisors that are convergent at the tips, and three upper and three lower molars. Eighteen species are currently recognized, the majority occurring in the Andes. Molecular, morphological, and morphometric analyses of specimens formerly identified as Platyrrhinus helleri support recognition of Platyrrhinus incarum as a separate species and reveal the presence of two species from western and northern South America that we describe herein as new ( Platyrrhinus angustirostris sp. nov. from eastern Colombia and Ecuador, north-eastern Peru, and Venezuela and Platyrrhinus fusciventris sp. nov. from Guyana, Suriname, French Guiana, Trinidad and Tobago, northern Brazil, eastern Ecuador, and southern Venezuela). These two new species are sister taxa and, in turn, sister to Platyrrhinus incarum .

Zoological Journal of the Linnean Society

Yellowstone grizzly bear investigations: Annual report of the Interagency Grizzly Bear Study Team, 2003

The contents of this Annual Report summarize results of monitoring and research from the 2003 field season. The report also contains a summary of nuisance grizzly bear ( Ursus arctos horribilis ) management actions. The study team continues to work on issues associated with counts of unduplicated females with cubs-of-the-year (COY). These counts are used to establish a minimum population size, which is then used to establish mortality thresholds for the Recovery Plan (U.S. Fish and Wildlife Service [USFWS] 1993). A computer program that defines the rule set used by Knight et al. (1995) to differentiate unique family groups is currently under development. Once complete, we intend to use it to verify the accuracy of the rules using known bears and their telemetry locations in test runs. We hope to have this work complete by summer 2004. The grizzly bear recovery plan (USFWS 1993) established mortality quotas at 4% of the minimum population estimate derived from female with COY data and no more than 30% of the 4% (1.2%) could be female bears. Simulation modeling (Harris 1984) established sustainable mortality at around 6% of the population. We used the latest information on reproduction and survival to estimate population trajectory in the same simulation model originally used by Harris. A Wildlife Monograph has been drafted and submitted for consideration as a publication. We anticipate final word sometime during winter 2005. Our project addressing the potential application of stable isotopes and trace elements to quantify consumption rates of whitebark pine ( Pinus albicaulis ) and cutthroat trout ( Oncorhynchus clarki ) by grizzly bears was completed. Our manuscript on consumption rates of whitebark pine has been published (Canadian Journal of Zoology 81:763-770). A copy can be found on the Interagency Grizzly Bear Study Team (IGBST) website http://www.nrmsc.usgs.gov/research/igbst-home.htm. The manuscript on fish consumption is in final review and should be published in 2004. We began a new study in Grand Teton National Park evaluating habitat use both temporally and spatially between grizzly and black ( Ursus americanus ) bears. We will employ a new form of Global Positioning System (GPS) technology that incorporates a spread spectrum communication system. Spread spectrum allows for transfer of stored GPS locations from the collar to a remote receiving station. We tested 2 collars during the fall of 2003 and provide a summary of the results. We will attempt to deploy several of these collars during the 2004 field season. The annual reports of the IGBST summarize annual data collection. Because additional information can be obtained after publication, data summaries are subject to change. For that reason, data analyses and summaries presented in this report supersede all previously published data. The study area and sampling techniques are reported by Blanchard (1985), Mattson et al. (1991a), and Haroldson et al. (1998).

Montana

Winter habitat use by female caribou in relation to wildland fires in interior Alaska

The role of wildland fire in the winter habitat use of caribou ( Rangifer tarandus ) has long been debated. Fire has been viewed as detrimental to caribou because it destroys the slow-growing climax forage lichens that caribou utilize in winter. Other researchers argued that caribou were not reliant on lichens and that fire may be beneficial, even in the short term. We evaluated the distribution of caribou relative to recent fires (<50 years old) within the current winter range of the Nelchina caribou herd in east-central Alaska. To address issues concerning independence and spatial and temporal scales, we used both conventional very high frequency and global positioning system telemetry to estimate caribou use relative to recent, known-aged burns. In addition, we used two methods to estimate availability of different habitat classes. Caribou used recently burned areas much less than expected, regardless of methodologies used. Moreover, within burns, caribou were more likely to use habitat within 500 m of the burn perimeter than core areas. Methods for determining use and availability did not have large influences on our measures of habitat selectivity.

Canadian Journal of Zoology