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Fungal disease prevention in seedlings of rice (Oryza sativa) and other grasses by growth-promoting seed-associated endophytic bacteria from invasive Phragmites australis

Non-cultivated plants carry microbial endophytes that may be used to enhance development and disease resistance of crop species where growth-promoting and protective microbes may have been lost. During seedling establishment, seedlings may be infected by several fungal pathogens that are seed or soil borne. Several species of Fusarium , Pythium and other water moulds cause seed rots during germination. Fusarium blights of seedlings are also very common and significantly affect seedling development. In the present study we screened nine endophytic bacteria isolated from the seeds of invasive Phragmites australis by inoculating onto rice, Bermuda grass ( Cynodon dactylon ), or annual bluegrass ( Poa annua ) seeds to evaluate plant growth promotion and protection from disease caused by Fusarium oxysporum . We found that three bacteria belonging to genus Pseudomonas spp. (SLB4- P. fluorescens , SLB6- Pseudomonas sp. and SY1- Pseudomonas sp.) promoted seedling development, including enhancement of root and shoot growth, and stimulation of root hair formation. These bacteria were also found to increase phosphate solubilization in in vitro experiments. Pseudomonas sp. (SY1) significantly protected grass seedlings from Fusarium infection. In co-culture experiments, strain SY1 strongly inhibited fungal pathogens with 85.71% growth inhibition of F. oxysporum , 86.33% growth inhibition of Curvularia sp. and 82.14% growth inhibition of Alternaria sp. Seedlings previously treated with bacteria were found much less infected by F. oxysporum in comparison to non-treated controls. On microscopic observation we found that bacteria appeared to degrade fungal mycelia actively. Metabolite products of strain SY1 in agar were also found to inhibit fungal growth on nutrient media. Pseudomonas sp. (SY1) was found to produce antifungal volatiles. Polymerase chain reaction (PCR) amplification using specific primers for pyrrolnitirin synthesis and HCN (hydrogen cyanide) production suggested presence of genes for both compounds in the genome of SY1. HCN was detected in cultures of SY1. We conclude that microbes from non-cultivated plants may provide disease protection and promote growth of crop plants.

Microorganisms↗

Monitoring for Pesticides in Groundwater and Surface Water in Nevada, 2008

Commercial pesticide applicators, farmers, and homeowners apply about 1 billion pounds of pesticides annually to agricultural land, non-crop land, and urban areas throughout the United States (Gilliom and others, 2006, p. 1). The U.S. Environmental Protection Agency (USEPA) defines a pesticide as any substance used to kill or control insects, weeds, plant diseases, and other pest organisms. Although there are important benefits from the proper use of pesticides, like crop protection and prevention of human disease outbreaks, there are also risks. One risk is the contamination of groundwater and surface-water resources. Data collected during 1992-2001 from 51 major hydrologic systems across the United States indicate that one or more pesticide or pesticide breakdown product was detected in more than 50 percent of 5,057 shallow (less than 20 feet below land surface) wells and in all of the 186 stream sites that were sampled in agricultural and urban areas (Gilliom and others, 2006, p. 2-4). Pesticides can contaminate surface water and groundwater from both point sources and non-point sources. Point sources are from specific locations such as spill sites, disposal sites, pesticide drift during application, and application of pesticides to control aquatic pests. Non-point sources represent the dominant source of surface water and groundwater contamination and may include agricultural and urban runoff, erosion, leaching from application sites, and precipitation that has become contaminated by upwind applications. Pesticides typically enter surface water when rainfall or irrigation exceeds the infiltration capacity of soil and resulting runoff then transports pesticides to streams, rivers, and other surface-water bodies. Contamination of groundwater may result directly from spills near poorly sealed well heads and from pesticide applications through improperly designed or malfunctioning irrigation systems that also are used to apply pesticides (chemigation; Carpenter and Johnson, 1997). Groundwater contamination also may come indirectly by the percolation of agricultural and urban irrigation water through soil layers and into groundwater and from pesticide residue in surface water, such as drainage ditches, streams, and municipal wastewater. To protect surface water and groundwater from pesticide contamination, the USEPA requires that all states establish a pesticide management plan. The Nevada Department of Agriculture (NDOA), with assistance from the USEPA, developed a management program of education (Hefner and Donaldson, 2006), regulation (Johnson and others, 2006), and monitoring (Pennington and others, 2001) to protect Nevada's water resources from pesticide contaminants. Sampling sites are located in areas where urban or agricultural pesticide use may affect groundwater, water bodies, endangered species, and other aquatic life. Information gathered from these sites is used by NDOA to help make regulatory decisions that will protect human and environmental health by reducing and eliminating the occurrence of pesticide contamination. This fact sheet describes current (2008) pesticide monitoring of groundwater and streams by the NDOA in Nevada and supersedes Pennington and others (2001).

Fact Sheet↗

Response of Tiger Salamanders (Ambystoma t. tigrinum) to wetland restoration in a midwestern agricultural landscape, U.S.A.

Since the early 1990s, > 3,000 ha of wetlands (and adjacent prairie) have been restored on the row-crop agricultural landscape of Winnebago County, Iowa, U.S.A. From 2014–2016, we surveyed 45 wetlands among 19 easements for occupancy by Eastern Tiger Salamanders ( Ambystoma tigrinum tigrinum ) and used radio-telemetry to measure their patterns of movement and habitat use. Rates of occupancy increased with wetland age, from < 25% for wetlands 1–2 years old to ∼75% for wetlands > 11 years old. A two-year survey (2014 and 2015) of ten wetlands restored in 2013 showed that nine were occupied after two years; we did not find a relationship between distance to the nearest salamander population and occupancy of newly restored wetlands by salamanders. We tracked 30 salamanders after they left their breeding wetlands for an average of 69±37 d (range = 14–109 d) and relocated them a total of 393 times. Typically, once a salamander left its breeding wetland, it traveled 50–350 m over several days, found a suitable burrow, then remained for much of the rest of the season. Mean daily distances traveled by salamanders were 7.9±5.6 m (range = 0–135 m); the range of maximum straight-line distances moved was 26–659 m; only one individual salamander traveled in a statistically linear path, relative to a random walk. While ∼90% of the landscape was composed of row-crop fields, salamanders used protective grassy habitats (e.g., restored prairie, road ditches) on ∼88% of our observations. Only three salamanders used row-crop fields, and two of them were killed by heavy equipment. Regardless of the terrestrial habitat types used by salamanders, we found them underground on 336 (84.8%) of our observations.

Iowa↗

Effects of zinc smelter emissions on farms and gardens at Palmerton, PA

In 1979, before the primary Zn smelter at Palmerton was closed due to excessive Zn and Cd emissions and change in the price of Zn, we were contacted by a local veterinarian regarding death of foals (young horses) on farms near the smelter. To examine whether Zn or Cd contamination of forage or soils could be providing potentially toxic levels of Zn or other elements in the diets of foals, we measured metals in forages, soils, and feces of grazing livestock on two farms near Palmerton. The farms were about 2.5 and about 10 km northeast of the East stack. Soils, forages, and feces were greatly increased in Zn and Cd. Soil, forage, and fecal Zn were near 1000 mg/kg and Cd, 10-20 mg/kg at farm A (2.5 km) compared to normal background levels of 43 mg Zn and 0.2 mg Cd/kg, respectively. Liver and kidney of cattle raised on Farm A were increased in Zn and Cd, indicating that at least part of the Zn and Cd in smelter contaminated forages was bioavailable. During the farm sampling, we obtained soil from one garden in Palmerton within 200 m of the primary (West) smelter. The Borough surrounds the smelter facility in a valley. Because soil Cd was near 100 mg/kg, we sampled garden soils and vegetables from over 40 gardens in 6 randomly selected blocks and in rural areas at different distances from the smelter during September, 1980. All homes were contacted on each sampled block. Nearly all homes had some garden, while at least 2 appeared to grow over 50% of their annual vegetable and potato consumption. Palmerton garden soils averaged 76 mg Cd/kg and 5830 mg Zn/kg. Gardeners had been taught to add limestone and organic fertilizers to counteract yield reduction and chlorosis due to the excessive soil Zn. Gardens with over 5000 mg Zn/kg were nearly allover pH 7, and many were calcareous. Because the smelter had not yet ceased operations in 1980, crops could have been polluted by aerosol Zn and Cd emitted by the smelter. Crop Zn and Cd were extremely high, about 100 times normal Cd levels. In more distant gardens, soil metals were not so high, and gardeners had not added as much limestone. Bean rotated with the potatoes and leafy vegetables often suffered chlorosis and visible yield reduction. Potatoes contained up to 6 mg Cd/kg dry wt. compared to backgrournd 0.20 mg/kg DW. An estimate of potential Zn and Cd intakes due to the contaminated crops was made using the teen-aged male diet model, and average Cd intakes would be 250 ug/day if diets contained 100% locally grown leafy and root vegetables and potatoes. Gardeners were warned to restrict consumption of garden grown leafy and root vegetables and potatoes, and to apply 22 T/A of limestone to restrict Cd uptake. Use of improved adult diet models, and increased understanding of the effect of Zn on Cd bioavailability indicate that little Cd risk may result from consuming garden vegetables grown at Palmerton. Individuals appear to be protected because Zn accompanied crop Cd, they grew only small amounts of vegetables in most cases, and aerosol pollution of crops has ceased. Reduced Zn emissions, and Cu supplementation have prevented further health effects on foals or cattle. Detailed examination of these risks is needed to develop remedial measures for both farms and gardens in the Zn + Cd polluted soils near Zn smelters at many locations in the United States and other countries. Remedial actions are necessarary to prevent chronic Zn toxicity to crops and livestock, and minimize the risk of chronic Cd toxicity to humans who consume locally grown garden crops.

Pennsylvania↗

Detecting cover crop end-of-season using VENµS and sentinel-2 satellite imagery

Cover crops are planted during the off-season to protect the soil and improve watershed management. The ability to map cover crop termination dates over agricultural landscapes is essential for quantifying conservation practice implementation, and enabling estimation of biomass accumulation during the active cover period. Remote sensing detection of end-of-season (termination) for cover crops has been limited by the lack of high spatial and temporal resolution observations and methods. In this paper, a new within-season termination (WIST) algorithm was developed to map cover crop termination dates using the Vegetation and Environment monitoring New Micro Satellite (VENµS) imagery (5 m, 2 days revisit). The WIST algorithm first detects the downward trend (senescent period) in the Normalized Difference Vegetation Index (NDVI) time-series and then refines the estimate to the two dates with the most rapid rate of decrease in NDVI during the senescent period. The WIST algorithm was assessed using farm operation records for experimental fields at the Beltsville Agricultural Research Center (BARC). The crop termination dates extracted from VENµS and Sentinel-2 time-series in 2019 and 2020 were compared to the recorded termination operation dates. The results show that the termination dates detected from the VENµS time-series (aggregated to 10 m) agree with the recorded harvest dates with a mean absolute difference of 2 days and uncertainty of 4 days. The operational Sentinel-2 time-series (10 m, 4–5 days revisit) also detected termination dates at BARC but had 7% missing and 10% false detections due to less frequent temporal observations. Near-real-time simulation using the VENµS time-series shows that the average lag times of termination detection are about 4 days for VENµS and 8 days for Sentinel-2, not including satellite data latency. The study demonstrates the potential for operational mapping of cover crop termination using high temporal and spatial resolution remote sensing data.

Remote Sensing↗

Application strategy for an anthraquinone-based repellent and the protection of soybeans from Canada goose depredation

Agricultural crops can sustain extensive damage caused by Canada geese ( Branta canadensis ) when these crops are planted near wetlands or brood-rearing sites. From 2000 to 2015, South Dakota Game, Fish and Parks spent >$5.6 million to manage damages caused by Canada geese to agricultural crops (primarily soybeans) in South Dakota, USA. For the purpose of developing a repellent application strategy for nonlethal goose damage management, we comparatively evaluated the width of anthraquinone applications (i.e., 9.4 L Flight Control ® Plus goose repellent/ha [active ingredient: 50% 9,10-anthraquinone] at 0–36 m versus 0–73 m perpendicular to the edge of wetlands in 2014), the timing of the first repellent application (i.e., 9.4 L Flight Control Plus goose repellent/ha at 50% versus 75% seedling emergence in 2015), the yield of soybeans ( Glycine max ) within repellent-treated and untreated subplots, and anthraquinone chemical residues in Day County, South Dakota. Soybean yield was greater in subplots 73 m from the water’s edge than that in the 36-m subplots ( P < 0.02). Among subplots first sprayed at 50% seedling emergence, soybean yield was greater at 73 m and 82 m than that at 36 m ( P < 0.005). In contrast, we observed no difference in yield at 36 m, 73 m, or 82 m in the subplots first sprayed at 72% seedling emergence ( P > 0.09). We therefore conclude that goose damages were effectively managed in subplots first sprayed at 72% seedling emergence. Anthraquinone residues averaged 674 and 629 ppm anthraquinone upon the first application of the repellent (June to July), 22 and 35 ppm anthraquinone in the mid-season hay (August to September), and 36 and 28 ppb anthraquinone in the harvested seed (October to November) in 2014 and 2015, respectively. Our results suggest that a 73-m bandwidth of anthraquinone-based repellents first applied at approximately 72% or 65–85% seedling emergence can protect soybeans from Canada goose depredation.

South Dakota↗

Leaching and sorption of neonicotinoid insecticides and fungicides from seed coatings

Seed coatings are a treatment used on a variety of crops to improve production and offer protection against pests and fungal outbreaks. The leaching of the active ingredients associated with the seed coatings and the sorption to soil was evaluated under laboratory conditions using commercially available corn and soybean seeds to study the fate and transport of these pesticides under controlled conditions. The active ingredients (AI) included one neonicotinoid insecticide (thiamethoxam) and five fungicides (azoxystrobin, fludioxonil, metalaxyl, sedaxane thiabendazole). An aqueous leaching experiment was conducted with treated corn and soybean seeds. Leaching potential was a function of solubility and seed type. The leaching of fludioxonil, was dependent on seed type with a shorter time to equilibrium on the corn compared to the soybean seeds. Sorption experiments with the treated seeds and a solution of the AIs were conducted using three different soil types. Sorption behavior was a function of soil organic matter as well as seed type. For most AIs, a negative relationship was observed between the aqueous concentration and the log K oc . Sorption to all soils tested was limited for the hydrophilic pesticides thiamethoxam and metalaxyl. However, partitioning for the more hydrophobic fungicides was dependent on both seed type and soil properties. The mobility of fludioxonil in the sorption experiment varied by seed type indicating that the adjuvants associated with the seed coating could potentially play a role in the environmental fate of fludioxonil. This is the first study to assess, under laboratory conditions, the fate of pesticides associated with seed coatings using commercially available treated seeds. This information can be used to understand how alterations in agricultural practices (e.g., increasing use of seed treatments) can impact the exposure (concentration and duration) and potential effects of these chemicals to aquatic and terrestrial organisms.

Journal of Environmental Science and Health - Part↗

Occurrence of azoxystrobin, propiconazole, and selected other fungicides in US streams, 2005-2006

Fungicides are used to prevent foliar diseases on a wide range of vegetable, field, fruit, and ornamental crops. They are generally more effective as protective rather than curative treatments, and hence tend to be applied before infections take place. Less than 1% of US soybeans were treated with a fungicide in 2002 but by 2006, 4% were treated. Like other pesticides, fungicides can move-off of fields after application and subsequently contaminate surface water, groundwater, and associated sediments. Due to the constant pressure from fungal diseases such as the recent Asian soybean rust outbreak, and the always-present desire to increase crop yields, there is the potential for a significant increase in the amount of fungicides used on US farms. Increased fungicide use could lead to increased environmental concentrations of these compounds. This study documents the occurrence of fungicides in select US streams soon after the first documentation of soybean rust in the US and prior to the corresponding increase in fungicide use to treat this problem. Water samples were collected from 29 streams in 13 states in 2005 and/or 2006, and analyzed for 12 target fungicides. Nine of the 12 fungicides were detected in at least one stream sample and at least one fungicide was detected in 20 of 29 streams. At least one fungicide was detected in 56% of the 103 samples, as many as five fungicides were detected in an individual sample, and mixtures of fungicides were common. Azoxystrobin was detected most frequently (45% of 103 samples) followed by metalaxyl (27%), propiconazole (17%), myclobutanil (9%), and tebuconazole (6%). Fungicide detections ranged from 0.002 to 1.15 &mu;/L. There was indication of a seasonal pattern to fungicide occurrence, with detections more common and concentrations higher in late summer and early fall than in spring. At a few sites, fungicides were detected in all samples collected suggesting the potential for season-long occurrence in some streams. Fungicide occurrence appears to be related to fungicide use in the associated drainage basins; however, current use information is generally lacking and more detailed occurrence data are needed to accurately quantify such a relation. Maximum concentrations of fungicides were typically one or more orders of magnitude less than current toxicity estimates for freshwater aquatic organisms or humans; however, gaps in current toxicological understandings of the effects of fungicides in the environment limit these interpretations.

Water, Air, & Soil Pollution↗

Irrigation in northeastern Mississippi

The phenomenal increase in the use of water for agriculture, industry, and public water supply in the past few years has been an important factor in bringing about the current accelerated inventory and appraisal of the water resources of Mississippi. As a result of severe droughts during the past several years, and of the favorable results of experiments, the water resources of northeastern Mississippi today are rapidly being developed for irrigation. Records have shown that even during years of normal rainfall the distribution of the rain usually is such that supplementary irrigation can be profitably practiced on almost any crop. Although in northeaster Mississippi the annual precipitation generally is enough to support crops and pasture, short periods of drought are common. Supplemental irrigation protects against the periods of drought during the growing season and increases the yield and quality of crops.

Mississippi↗

Are soils of Iowa USA currently a carbon sink or source? Simulated changes in SOC stock from 1972 to 2007

Upscaling the spatial and temporal changes in carbon (C) stocks and fluxes from sites to regions is a critical and challenging step toward improving our understanding of the dynamics of C sources and sinks over large areas. This study simulated soil organic C (SOC) dynamics within 0–100 cm depth of soils across the state of Iowa in the USA from 1972 to 2007 using the General Ensemble biogeochemical Modeling System (GEMS). The model outputs with variation coefficient were analyzed and assembled from simulation unit to the state scale based upon major land use types at annual step. Results from this study indicate that soils (within a depth of 0–100 cm) in Iowa had been a SOC source at a rate of 190 ± 380 kg C ha −1 yr −1 . This was likely caused by the installation of a massive drainage system which led to the release of SOC from deep soil layers previously protected under poor drainage conditions. The annual crop rotation was another major force driving SOC variation and resulted in spatial variability of annual budgets in all croplands. Annual rate of change of SOC stocks in all land types depended significantly on the baseline SOC levels; soils with higher SOC levels tended to be C sources, and those with lower levels tended to be C sinks. Management practices (e.g., conservation tillage and residue management practices) slowed down the C emissions from Iowa soils, but could not reverse the general trend of net SOC loss in view of the entire state due mainly to a high level of baseline SOC stocks.

Agriculture, Ecosystems and Environment↗

A conceptual framework for effectively anticipating water-quality changes resulting from changes in agricultural activities

Agricultural activities can affect water quality and the health of aquatic ecosystems; many water-quality issues originate with the movement of water, agricultural chemicals, and eroded soil from agricultural areas to streams and groundwater. Most agricultural activities are designed to sustain or increase crop production, while some are designed to protect soil and water resources. Numerous soil- and water-protection practices are designed to reduce the volume and velocity of runoff and increase infiltration. This report presents a conceptual framework that combines generalized concepts on the movement of water, the environmental behavior of chemicals and eroded soil, and the designed functions of various agricultural activities, as they relate to hydrology, to create attainable expectations for the protection of—with the goal of improving—water quality through changes in an agricultural activity. The framework presented uses two types of decision trees to guide decision making toward attainable expectations regarding the effectiveness of changing agricultural activities to protect and improve water quality in streams. One decision tree organizes decision making by considering the hydrologic setting and chemical behaviors, largely at the field scale. This decision tree can help determine which agricultural activities could effectively protect and improve water quality in a stream from the movement of chemicals, or sediment, from a field. The second decision tree is a chemical fate accounting tree. This decision tree helps set attainable expectations for the permanent removal of sediment, elements, and organic chemicals—such as herbicides and insecticides—through trapping or conservation tillage practices. Collectively, this conceptual framework consolidates diverse hydrologic settings, chemicals, and agricultural activities into a single, broad context that can be used to set attainable expectations for agricultural activities. This framework also enables better decision making for future agricultural activities as a means to reduce current, and prevent new, water-quality issues.

Scientific Investigations Report↗

Hydrogeologic characterization of the San Antonio Creek Valley watershed, Santa Barbara County, California

The San Antonio Creek Valley watershed (SACVW) is located in western Santa Barbara County, about 15 miles south of Santa Maria and 55 miles north of Santa Barbara, California. The SACVW is about 135 square miles and encompasses the San Antonio Creek Valley groundwater basin; the SACVW is separated from adjacent groundwater basins by the Casmalia and Solomon Hills to the north, and the Purisima Hills to the south. At the western, downstream part of the valley, uplifted, consolidated rocks cause groundwater to discharge at land surface at Barka Slough. Since the late 1800s, groundwater has been the primary source of water for agricultural, military, municipal, and domestic uses. Groundwater withdrawal by pumping exceeded the amount of water replenishing the aquifer system during water years 1948–2018, causing groundwater-level declines of more than 150 feet in parts of the valley and reducing base flow at Barka Slough. Reliance on groundwater for agricultural water use (primarily for the irrigation and frost protection of vineyards, and fruit and berry crops) continues to strain the sustainability of the groundwater system. Through a cooperative agreement, the Santa Barbara County Water Agency and Vandenberg Space Force Base invited the U.S. Geological Survey to address declines in groundwater levels, develop a better understanding of the hydrogeologic system, and provide tools to help evaluate and manage the effects of future development of the San Antonio Creek Valley groundwater basin within the encompassing San Antonio Creek Valley watershed (SACVW). The objectives of this study were to (1) refine the hydrogeologic framework of the San Antonio Creek Valley watershed, (2) quantify the hydrologic budget of the valley, and (3) develop hydrologic modeling tools to evaluate and aid in managing the groundwater resource. This report focuses on the first and second objectives to construct a hydrogeologic framework and characterize the historical and present-day hydrologic conditions of the SACVW during water years 1948–2018. As part of the second objective, work included quantifying the hydrologic budget and evaluating the hydrogeologic system using a combination of existing data and geologic and hydrologic data collected for this study. The groundwater-flow system in the SACVW consists of five hydrogeologic units. These separate water-bearing units were identified based on hydrogeologic properties, such as sediment grain size, vertical-head differences in multiple-depth, monitoring-well sites, long-term groundwater level responses to pumping and climate, and the chemical character of groundwater and groundwater age in the mostly semi-consolidated to unconsolidated basin-fill sediments. The hydrogeologic units that comprise the different aquifers vary in their lithologic composition. The upper and lower aquifers (upper Paso Robles Formation, and lower Paso Robles Formation and Careaga Sandstone, respectively) are relatively coarse grained and are comprised of sand, gravel, and clay; the middle confining unit (the middle Paso Robles Formation) is relatively fine grained and is comprised of primarily clay, silt, and sand. The Pezzoni-Casmalia and Los Alamos faults, which are inferred to transect the SACVW between the western and eastern areas of the valley floor, do not appear to substantially affect the groundwater system. Present-day recharge to the study area occurs primarily as infiltration from precipitation and streams in the upland areas of the Casmalia Hills and Solomon Hills, and along the main channel of San Antonio Creek. Reported estimates of annual natural recharge during water years 1948–2018 generally ranged from about 5,000 acre-feet to more than about 30,000 acre-feet. Stable and radioactive isotopes show that groundwater from the lower aquifer is old and probably was recharged as infiltration from precipitation and streams in the eastern upland areas of the Solomon Hills; however, the infiltration and recharge from these sources probably does not occur under present-day climatic conditions. Anthropogenic recharge, from sources such as return flow from agricultural irrigation, municipal water systems, and wastewater effluent, was estimated to range from about 600 acre-feet in 1948 to about 6,600 acre-feet in 2018. The average annual amount of groundwater removed from the SACVW by pumping during 1948–2018 was estimated to be about 17,200 acre-feet per year, increasing from about 3,000 acre-feet in 1948 to about 32,600 acre-feet in 2018. Estimates of annual pumpage generally exceeded estimates of annual recharge beginning in the mid-1970s and continuing through 2018. The predominant direction of groundwater flow under historical and present-day conditions was from the eastern uplands in the Solomon Hills to the west along San Antonio Creek to the discharge area in Barka Slough, and from the northern uplands in the Casmalia Hills south to San Antonio Creek. Pumpage since the early 1900s and the subsequent groundwater-level declines have substantially reduced the amount of natural groundwater discharge at Barka Slough. Estimates of base flow to San Antonio Creek at the western, downstream extent of the SACVW have varied over time in response to changes in groundwater pumpage and climate; however, there was an overall decline in base flow during water years 1956–2018, decreasing from an average of about 1,700 acre-feet per year during 1956–69, to about 300 acre-feet per year during 2016–18. The long-term extraction of groundwater correlates with a decrease in groundwater levels by more than about 150 feet since the early 1940s in the eastern part of the basin near Los Alamos, and as much as about 50 feet in the upland areas and in the western part of the basin. At Barka Slough, groundwater levels have declined below land surface in some places, altering native riparian vegetation in and around the slough. Surface-water quality in the SACVW varied depending on location and the time of year the samples were collected and on the amount of annual precipitation Most groundwater in the SACVW was calcium-bicarbonate-type water with total dissolved-solids concentrations of about 500–800 milligrams per liter generally representing water naturally recharged as infiltration from precipitation and streams. Total dissolved-solids concentrations in some wells ranged from 800 to 8,000 milligrams per liter, suggesting mixing of naturally recharged infiltrated water with water associated with oil-bearing geologic formations, agricultural products, or the evaporation of shallow groundwater. Concentrations of total dissolved solids and the chemical constituents chloride, nitrate plus nitrite (as nitrogen), calcium, and magnesium at selected wells generally increased during water years 1980–2018; increasing concentrations of these constituents may be associated with the expansion of agriculture in the watershed over time and the corresponding increase in the use of nitrates and calcium- and magnesium-based fertilizers and soil additives in modern agricultural practices. The predominant direction of groundwater flow during historical and present-day conditions was from the eastern uplands in the Solomon Hills to the west along San Antonio Creek toward Barka Slough, and from the western uplands in the Casmalia Hills south to San Antonio Creek. The age of groundwater in the SACVW was evaluated using radioactive isotopes, and the flow of groundwater within the SACVW was evaluated using radioactive and stable isotopes. Modern groundwater (recharged after 1952) was generally found adjacent to San Antonio Creek and its tributaries in wells with perforated depths that averaged about 270 feet below land surface. Pre-modern groundwater (recharged before 1952) was found in wells that had average perforation depths of about 540 ft below land surface. Pre-modern groundwater identified in wells in the eastern upland area is interpreted to have had long, slow travel times to the western part of the SACVW where it was eventually discharged as base flow at Barka Slough or extracted as groundwater pumpage.

California↗

Boron Hazards to Fish, Wildlife, and Invertebrates: A Synoptic Review

Ecological and toxicological aspects of boron (B) in the environment are reviewed, with emphasis on natural resources. Subtopics covered include environmental chemistry, background concentrations, effects, and current recommendations for the protection of living resources. Boron is not now considered essential in mammalian nutrition, although low dietary levels protect against fluorosis and bone demineralization. Excessive consumption (i.e., >1,000 mg B/kg diet, >15 mg B/kg body weight daily, >1.0 mg B/L drinking water, or >210 mg B/kg body weight in a single dose) adversely affects growth, survival, or reproduction in sensitive mammals. Boron and its compounds are potent teratogens when applied directly to the mammalian embryo, but there is no evidence of mutagenicity or carcinogenicity. Boron`s unique affinity for cancerous tissues has been exploited in neutron capture radiation therapy of malignant human brain tumors. Current boron criteria recommended for the protection of sensitive species include <0.3 mg B/L in crop irrigation waters, <1.0 mg B/L for aquatic life, <5.0 mg B/L in livestock drinking waters, <30 mg B/kg in waterfowl diets, and <100 mg B/kg in livestock diets.

Contaminant Hazard Reviews↗

A spatial modeling framework to evaluate domestic biofuel-induced potential land use changed and emissions

We present a novel bottom-up approach to estimate biofuel-induced land-use change (LUC) and resulting CO 2 emissions in the U.S. from 2010 to 2022, based on a consistent methodology across four essential components: land availability, land suitability, LUC decision-making, and induced CO 2 emissions. Using high-resolution geospatial data and modeling, we construct probabilistic assessments of county-, state-, and national-level LUC and emissions for macroeconomic scenarios. We use the Cropland Data Layer and the Protected Areas Database to characterize availability of land for biofuel crop cultivation, and the CERES-Maize and BioCro biophysical crop growth models to estimate the suitability (yield potential) of available lands for biofuel crops. For LUC decisionmaking, we use a county-level stochastic partial-equilibrium modeling framework and consider five scenarios involving annual ethanol production scaling to 15, 22, and 29 BG, respectively, in 2022, with corn providing feedstock for the first 15 BG and the remainder coming from one of two dedicated energy crops. Finally, we derive high-resolution above-ground carbon factors from the National Biomass and Carbon Data set to estimate emissions from each LUC pathway. Based on these inputs, we obtain estimates for average total LUC emissions of 6.1, 2.2, 1.0, 2.2, and 2.4 gCO2e/MJ for Corn-15 Billion gallons (BG), Miscanthus × giganteus (MxG)-7 BG, Switchgrass (SG)-7 BG, MxG-14 BG, and SG-14 BG scenarios, respectively.

Environmental Science & Technology↗

Chlorinated hydrocarbon insecticides

Chlorinated hydrocarbon insecticides (OCs) are diverse synthetic chemicals that belong to several groups, based on chemical structure. DDT is the best known of these insecticides. First synthesized in 1874, DDT remained obscure until its insecticidal properties became known in 1939, a discovery that earned a Nobel Prize in 1948. The means of synthesizing the cyclodiene group, the most toxic of the OCs, was discovered in 1928 and resulted in a Nobel Prize in 1950. The insecticidal properties of cyclodienes, which include aldrin, dieldrin, and endrin (Table 40.1), were discovered about 1945. OCs became widely used in the United States following World War II. Their primary uses included broad spectrum applications for agricultural crops and forestry and, to a lesser extent, human health protection by spraying to destroy mosquitoes and other potential disease carriers. These compounds also became widely used to combat insect carriers of domestic animal diseases.

Information and Technology Report↗

The LTAR cropland Common Experiment at Lower Chesapeake Bay

The Lower Chesapeake Bay (LCB) Long-Term Agroecosystem Research (LTAR) Common Experiment (CE) located in Beltsville, MD, focuses on research of concern to producers of the major regional crops, which are corn ( Zea mays L.), soybean [ Glycine max (L.) Merr.], wheat ( Triticum aestivum L.), and various forage species. Livestock production in the region includes broiler and laying chickens ( Gallus gallus domesticus L.) and dairy and beef cattle ( Bos taurus L.). The LCB region is among the most heavily populated in the United States. Urban development pressure is high for both farms and natural areas. The need to restore Chesapeake Bay water quality is a major influence on regional agricultural practices. Conservation practices such as cover cropping, no-till agriculture, and nutrient management planning are more common in the region compared to nationally. However, farmers still face management challenges implementing practices that address water quality and the rise of herbicide-resistant weeds. Researchers at the LCB site recognize the need to protect the Chesapeake and Delaware Bays and maintain farmer profitability. The LCB CE compares a 3-year crop rotation system featuring alternative crop management (cover crop intensification, crop rotation diversification, and integrated weed management [IWM]) with a prevailing 2-year system (no cover crops and no IWM), both under continuous no-tillage, to identify the optimal balance to promote the sustainability of regional cropping systems. The LTAR LCB site provides data-driven tools and solutions to support farmers in the mid-Atlantic region.

Delaware, Maryland, New Jersey, Pennsylvania, Virg↗

Bayesian belief network model to predict human-wildlife conflict in protected areas

Human-wildlife conflict (HWC) poses a pervasive global challenge, affecting livelihoods and threatening biodiversity. To better anticipate and mitigate HWC risk, we developed a large-scale predictive model using a Bayesian Belief Network (BBN). We surveyed 1,011 park rangers across 135 terrestrial protected areas in three Andean countries, documenting recent HWC incidents involving wildlife persecution or killing, livestock depredation, crop damage, or threats to human safety and property. We identified key drivers of HWC risk, including governance, wildlife acceptance, participation, and habitat quality. A sensitivity analysis revealed that enhancing governance and improving wildlife acceptance could reduce HWC risk by > 85%. The BBN model demonstrated scalability, effectively identifying strategies to reduce HWC risk at multiple scales, from individual protected areas to national networks. Our findings highlight the importance of strengthening governance, increasing wildlife acceptance, and enhancing community participation in conservation efforts. BBNs provide a flexible, cost-effective, and data-driven tool to guide protected areas and wildlife managers in monitoring, anticipating, and making informed decisions to mitigate conflict and promote coexistence.

Scientific Reports↗

Application of a geographic information system in analyzing the occurrence of atrazine in groundwater of the mid-continental United States

The US Geological Survey, US Department of Agriculture, and US Environmental Protection Agency are conducting research and regional assessments in support of policy alternatives intended to protect water resources from agricultural chemical contamination. The mid-continent was selected because of the intense row crop agriculture and associated herbicide application in this region. An application of a geographic information system is demonstrated for analyzing and comparing the distribution of estimated atrazine use to the detection rate of atrazine in groundwater. Understanding the relations between atrazine use and detection in groundwater is important in policy deliberations to protect water resources. Relational analyses between measures of chemical use and detection rate by natural resource units may provide insight into critical factors controlling the processes that result in groundwater contamination from agricultural chemicals.

Conference Paper↗