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Accounting for spatial habitat and management boundaries when estimating forest bird population distribution and density: Inferences from a soap film smoother

Birds are often obligate to specific habitats which can result in study areas with complex boundaries due to sudden changes in vegetation or other features. This can result in study areas with concave arcs or that include holes of unsuitable habitat such as lakes or agricultural fields. Spatial models used to produce species’ distribution and density estimates need to respect such boundaries to make informed decisions for species conservation and management. The soap film smoother is one model for complex study regions which controls the boundary behaviour, ensuring realistic values at the edges of the region. We apply the soap film smoother to account for boundary effects and compare it with thin plate regression spline (TPRS) smooth and design-based conventional distance sampling methods to produce abundance estimates from point-transect distance sampling collected data on Hawai‘i ‘Ākepa Loxops coccineus in the Hakalau Forest Unit of the Big Island National Wildlife Refuge Complex, Hawai‘i Island, USA. The soap film smoother predicted zero or near zero densities in the northern part of the domain and two hotspots (in the southern and central parts of the domain). Along the boundary the soap film model predicted relatively high densities where ‘Ākepa occur in the adjacent forest and near zero elsewhere. The design-based and soap film abundance estimates were nearly identical. The width of the soap film confidence interval was 16.5% and 0.8% wider than the width of the TPRS smooth and design-based confidence intervals, respectively. The peaks in predicted densities along the boundary indicates leakage by the TPRS smooth. We provide a discussion of the statistical methods, biological findings and management implications of applying soap film smoothers to estimate forest bird population status.

Hawaii

Forest bird populations at the Big Island National Wildlife Refuge Complex, Hawai‘i

Endemic Hawaiian forest birds have experienced dramatic population declines. The Big Island National Wildlife Refuge Complex (BINWRC) was created for conservation of endangered Hawaiian forest birds and their habitats. Surveys have been conducted at two units of BINWRC to monitor forest bird populations and their response to management actions. We analyzed survey data from 1987 to 2019 at the Hakalau Forest Unit (HFU) and from 1995 to 2019 at the Kona Forest Unit (KFU). We analyzed three strata at HFU: open-forest, closed-forest, and pasture, and two strata at the KFU: upper (>1524 m elevation) and lower (<1524 m). In all years, ‘i‘iwi (Drepanis coccinea), ‘apapane (Himatione sanguinea), and Hawai‘i ‘amakihi (Chlorodrepanis virens virens) were the most abundant species at HFU. The three endangered forest bird species, Hawai‘i ‘ākepa (Loxops coccineus), ‘alawī (Loxops mana, also known as Hawai‘i creeper) and ‘akiapōlā‘au (Hemignathus wilsoni), had much lower densities. The most abundant species at KFU was ‘apapane, followed by Hawai‘i ‘amakihi and warbling white-eye (Zosterops japonicus) at much lower densities. At HFU we found a continuation of several trends observed in previous analyses from 1987–2012, with most species’ trends upward in pasture stratum, stable in the open-forest stratum, and downward in the closed-forest stratum. However, when we looked at the most recent decade at HFU, more species were showing downward trends in all three strata. At KFU results were mixed, with more species’ trends downward in the upper stratum and more species’ trends upward in the lower stratum. Populations of endangered forest species were either locally extirpated at KFU or in numbers too low to reliably estimate population densities. Both units in the BINWRC are important for conservation of forest birds on Hawai‘i Island, and our results show that HFU supports the majority of the three endangered forest bird species found on Hawai‘i Island. Our analysis also shows the importance of continuous monitoring and timely analysis to track forest bird populations. With the additional data provided by continued surveys, we determined conclusive population trends for species whose trends were previously inconclusive. Knowing current population densities, abundances, and trends allows managers to evaluate and adapt management actions to support forest bird conservation at the BINWRC.

Hawaii

Seasonal distribution of bird populations at the Patuxent Research Refuge

A detailed study of seasonal changes in bird populationswas made at the Patuxent Research Refuge, located between Bowie and Laurel, Maryland during the years 1936-1949. The history of the Refuge is reviewed and its physical and biological characteristlcs summarized.. The methods of study used during the investigation mcluded: periodic censuses of a representative 304-acre study area over a two-year period; a census of the breeding population of the entire. Refuge during one year; detailed population studies of representative habitats during the breeding season; censuses of the wintering population of. the entire Refuge during two years; general surveys of wintering populations for seven years; and general observations of seasonal changes in bird populatlons over a fourteen-year period, including data from an extensive banding program and from many special types of censuses. The phenology of the Refuge is described in conslderable detail throughout the year, with special attention given to major fluctuatIons in bIrd populations as correlated with climatic changes and with seasonal aspectlon. of the vegetation. The component specIes of birds m the more important migration waves are listed. Figures approximating the Refuge breeding and wmtering populations are given, while indices representing the relative abundance of bird populations, based on figures from the two-year seasonal populatlon study, were obtained for the entire year. The greatest variety of species as well as the greatest number of individuals occurred on the Refuge during the migration .periods in spring and fall, the variety of species being slightly higher in spring than in fa!l, while the population of individuals was considerably higher in fall. Wmtering and breeding populations were low and relatively stable compared to the populations at other seasons.The ecological affinities of the bird populations differed greatly from one season to another. Species characteristic of edge habitats were much more numerous in winter, while forest species were predominant in summer. Insectivorous species comprised a large proportion (40 to 60 percent) of the total population during the warmer months, but were of minor importance in winter. The greatest number of species of birds on the Refuge occurred during the population peaks of insectivorous species, while the largest number of individuals was found during the population peaks of omnivorous and herbivorous species. The population peaks of insectivorous species were found to occur much later in spring and considerably earlier in fall than the. corresponding peaks of omnivorous and herbivorous species. The Fringillidae contributed the greatest number of individuals in winter, while the Parulidae was the most important family (numerically) in summer. Water birds and marsh birds were relatively unimportant throughout the year, due to the scarcity of suitable habitats. Permanent resident species were found to vary from about one-fifth to slightly less than one-half of the total population throughout the year, although many individuals of these species were either transients or part-time residents. Summer residents and winter residents were more abundant than permanent residents during their respective periods of occurrence. During the greater part of the migration period, transient species were found to comprise only 10 to 20 percent of the total population. transient individuals of all species would account for a much larger proportion of the population at this time. After comparing the results of these investigations with similar studies in other areas, it is believed that the seasonal population changes on the Patuxent Research Refuge are fairly representative of those occurring throughout the Middle Atlantic and East-central States. Yearly variations in seasonal population changes are described and the causative factors indicated, when known. Of these, food supply and weather conditions were generally the m

Society of Environmental Toxicology and Chemistry,

Effects of oil pollution on marine bird populations

Worldwide oil pollution has killed millions of marine birds in this century but it has been difficult to directly link these losses to population declines. Estimated bird losses from acute spills and chronic pollution are not precise because we usually do not know the proportion of birds killed at sea that are detected on beach surveys or the origin of those birds. Data required to assess effects on populations (abundance, distribution, productivity, recruitment and mortality rates) are inadequate or absent for many species. Local populations may sometimes be devastated by oil pollution, but whether these losses are biologically significant to global populations, especially in light of natural or human-induced sources of mortality, is debatable. In this paper. We review the evidence for effects of oil on marine bird populations, discuss four case histories, and address the debate concerning short- and long-term effects on avian populations.

Conference Paper

Monitoring Canadian bird populations with winter counts

Two winter bird surveys in Canada have range-wide population monitoring potential: Christmas Bird Counts (CBCs) and Project FeederWatch (PFW). CBC trends are shown to be correlated to Breeding Bird Survey (BBS) trends, whether or not part of the winter range lies outside the CBC coverage area. Some species are poorly covered by this survey (e.g. seabirds, nocturnal species, and Neotropical migrants). Only eight Canadian breeding species that are not sampled by the BBS have their winter range well-covered by the CBC, but the CBC should be valuable as an independent source of trend data for many more species, including northern nesters with only marginal BBS coverage. More work is needed to show whether PFW trends match BBS trends; even if they do, PFW covers relatively few species, and most are monitored already by the BBS and/or CBC

Book chapter

Long-term trends of local bird populations based on monitoring schemes: Are they suitable for justifying management measures?

Local biodiversity monitoring is important to assess the effects of global change, but also to evaluate the performance of landscape and wildlife protection, since large-scale assessments may buffer local fluctuations, rare species tend to be underrepresented, and management actions are usually implemented on local scales. We estimated population trends of 58 bird species using open-population N-mixture models based on count data in two localities in southeastern Spain, which have been collected according to a citizen science monitoring program (SACRE, Monitoring Common Breeding Birds in Spain) over 21 and 15 years, respectively. We performed different abundance models for each species and study area, accounting for imperfect detection of individuals in replicated counts. After selecting the best models for each species and study area, empirical Bayes methods were used for estimating abundances, which allowed us to calculate population growth rates ( λ ) and finally population trends. We also compared the two local population trends and related them with national and European trends, and species functional traits (phenological status, dietary, and habitat specialization characteristics). Our results showed increasing trends for most species, but a weak correlation between populations of the same species from both study areas. In general, local population trends were consistent with the trends observed at national and continental scales, although contrasting patterns exist for several species, mainly with increasing local trends and decreasing Spanish and European trends. Moreover, we found no evidence of a relationship between population trends and species traits. We conclude that using open-population N-mixture models is an appropriate method to estimate population trends, and that citizen science-based monitoring schemes can be a source of data for such analyses. This modeling approach can help managers to assess the effectiveness of their actions at the local level in the context of global change.

Journal of Ornithology

Forest bird populations at the Big Island National Wildlife Refuge Complex, Hawai'i

E ndemic Hawaiian forest birds have experienced dramatic population declines. The Big Island National Wildlife Refuge Complex (Refuge Complex) was established for the conservation of endangered forest birds and their habitats. Surveys have been conducted at two units of the Refuge Complex to monitor forest bird populations and their response to management actions. We analyzed survey data from 1987 to 2019 at the Hakalau Forest Unit (HFU) and from 1995 to 2019 at the Kona Forest Unit (KFU). We analyzed three strata at HFU: open-forest, closed-forest, and afforested-pasture, and two strata at KFU: upper (>1,524 m elevation) and lower (<1,524 m). In all years, ‘i‘iwi Vestiaria coccinea , ‘apapane Himatione sanguinea , and Hawai'i ‘amakihi Chlorodrepanis virens virens were the most abundant species at HFU. Three endangered forest bird species, Hawai'i ‘ākepa Loxops coccineus , ‘alawī Loxops mana (also known as Hawai'i creeper) and ‘akiapōlā‘au Hemignathus wilsoni , had much lower densities. The most abundant species at KFU was ‘apapane, followed by Hawai'i ‘amakihi at much lower densities. We found a continuation of several trends observed in previous analyses at HFU up to 2012, with most species’ trends upward in afforested-pasture stratum, stable in the open-forest stratum, and downward in the closed-forest stratum. However, more species were showing downward trends in all three strata during the most recent decade. Results were mixed at KFU, with most species’ trends downward in the upper stratum and upward in the lower stratum. Populations of endangered species were either locally extirpated at KFU or in numbers too low to reliably estimate population abundance. The Refuge Complex is important for conservation of forest birds on Hawai'i Island. Our results show that HFU supports the majority of three endangered forest bird species. Threats to forest birds at the Refuge Complex appear to be having a negative impact. These threats include habitat loss, disease, feral ungulates, and nonnative predators. Continuing and enhancing management actions, such as forest restoration and removal of invasive species, could help mitigate these impacts and allow the Refuge Complex to remain a key site for forest bird conservation in Hawai'i.

Hawaii

Reappraisal of the Winter Bird-Population Study technique

Standardized morning and afternoon counts were conducted in two deciduous forest plots during seven winters. Morning counts yielded more species than afternoon counts, as well as higher counts of most species. A minimum of eight visits is recommended. Six visits yielded 2% to 5% fewer species, depending on the size and bird population of the study plot. Cumulative means for individual species varied erratically for most species when the number of visits was less than seven.

Book chapter

Disentangling the effects of climate and landscape change on bird population trends in the western U.S. and Canada

Changes in climate are often assumed result in changes to species’ ranges, with potential impacts on natural system functioning and ecosystem services. ‘Climate envelope models’, which rely on correlations between climate and species distributions, have been used to predict the future of biodiversity under these assumptions. However, other factors including land-cover, dispersal ability and interspecific competition and facilitation may play an important role in driving species distributions and population trends either alone or in combination with climate. In an ongoing project, we used long-term data on bird distributions and abundance to develop climate envelope and land-use models for 161 species in order to provide a multi-species test of the degree to which climate envelope versus land-use models are useful in predicting species distributions and population trends of birds in forest ecosystems of the western U.S. and Canada. Our results suggest that models describing associations between climatic variables and abundance patterns can be used for some species to predict changes through time, and that changes in climate have already driven shifts in the geographic patterns of abundance of bird populations in western North America. For other species, models using land-use variables including raw remote-sensing variables may provide the best predictions for abundance change. The results of this research showing the reliability of models across multiple species will aid managers in understanding which species are most vulnerable to changes from climate, land-use change and their interaction.

Final Report

Overview of national bird population monitoring programs and databases

A number of programs have been set up to monitor populations of nongame migratory birds. We review these programs and their purposes and provide information on obtaining data or results from these programs. In addition, we review recommendations for improving these programs.

Book chapter

Effectiveness of stewardship and management strategies to conserve coastal bird populations in the northern Gulf of Mexico: A literature review

Shorebirds, seabirds, and wading birds (hereafter coastal birds) have experienced considerable losses over the last century and require proactive conservation management to stabilize or grow populations. Habitat loss and/or degradation and human disturbance are among the most urgent threats faced by coastal bird populations. Identifying effective conservation management techniques to mitigate these threats is of great interest in the northern Gulf of Mexico (nGoM), a region that provides important habitat during the entire life cycle of resident birds and an essential breeding, wintering, and stopover site for migratory birds. A suite of 35 coastal birds have been identified as priority species for multi-scale conservation monitoring in this region by the Gulf of Mexico Avian Monitoring Network (GoMAMN). This review focuses on impacts of human disturbance and anthropogenic habitat loss and/or degradation on coastal birds and effectiveness of the management strategies implemented to mitigate them, with the goal of informing nGoM management. Our review found that human disturbance was best alleviated by simultaneously deploying complementary stewardship techniques (e.g., signs, fencing, steward patrols, education and community involvement, and beach closures to humans, dogs, and vehicles). However, the relative efficacy of each individual technique is unclear given that only 13% of human disturbance management studies and 38% of habitat management studies have been conducted in the nGoM region. Given the nature of coastal bird habitat and associated risks from sea level rise and human development, most habitat management studies encouraged strategic applications of beach renourishment, limitations on beach raking, as well as site- and species-specific restoration strategies. Studies demonstrated that successful management of coastal birds in the nGoM combined these approaches, employing complementary and adaptive strategies over extended periods.

Journal of Field Ornithology

Bird populations on the Island of Tinian: persistence despite wholesale loss of native forests

Bird habitat on the island of Tinian, Mariana Islands, has been substantially altered, and only around 5% of the island has native forest today. The modern bird fauna is likely to be a subset of the original avifauna where only species tolerant to native forest loss and human disturbance have survived. Avian surveys were conducted on the island in 2008 by the U.S. Fish and Wildlife Service to provide current densities and abundances of the remaining species, and assess population trends using data collected from previous surveys. During the three surveys (1982, 1996, and 2008), 18 species were detected, and abundances and trends were assessed for 11 species. Five of the nine native species and one alien bird have increased since 1982. Three native birds&mdash;Mariana Fruit-Dove ( Ptilinopus roseicapilla ), Micronesian Honeyeater ( Myzomela rubratra ), and Tinian Monarch ( Monarcha takatsukasae )&mdash;have decreased since 1982. Trends for the remaining two birds (one native and one alien) were considered relatively stable. Only five birds, including the Tinian Monarch, showed significant differences among regions of Tinian by year. Increased development on Tinian may result in increases in habitat clearing and expansion of human-dominated habitats, and declines in some bird populations would likely continue or be exacerbated with these actions. Expanded development activities on Tinian would also mean increased cargo movement between Guam and Tinian, elevating the probability of transporting the Brown Tree Snake ( Boiga irregularis ) to Tinian, which would lead to precipitous decreases and extinctions.

Hawai'i

A monitoring framework to assess forest bird population response to landscape scale mosquito suppression using the Incompatible Insect Technique

The Birds, Not Mosquitoes Monitoring and Support Science Working Group detailed methods for monitoring the population response of Hawaiian forest birds during implementation of the Incompatible Insect Technique (IIT) on the islands of Maui and Kauaʻi. The group prioritized methods for measuring the influence of mosquito suppression on populations within IIT treatment and control areas and identified focal species for IIT efficacy monitoring in birds. Three primary metrics were established to assess the impact of IIT on vulnerable species: population demography, density, and geographic range. Each metric can be evaluated using multiple methods. This report reviews those methods, with emphasis on approaches supported by pre-IIT baseline data and compatible with a before-after control-impact (BACI) study design for evaluating population responses over time. Focal avian species were selected based on population size estimates, fecundity, and disease susceptibility. We identified ʻākohekohe (Palmeria dolei), ʻiʻiwi (Drepanis coccinea), Maui ʻalauahio (Paroreomyza montana), Hawaiʻi ʻamakihi (Chlorodrepanis virens), Kauaʻi ʻamakihi (Chlorodrepanis stejnegeri), Kauaʻi ʻelepaio (Chasiempis sclateri), and ʻanianiau (Magumma parva) as focal species for monitoring population level response to disease suppression. Populations of kiwikiu (Pseudonestor xanthophrys), ʻakikiki (Oreomystis bairdi), akekeʻe (Loxops caeruleirostris), and the ʻiʻiwi population on Kauaʻi may be too small (e.g., <100 individuals) to effectively monitor, and it is unlikely that sufficient data can be collected from these birds to show IIT efficacy in a relatively short time frame (i.e., 5–10 years). Despite the logistical challenges to IIT implementation, there is potential to maintain disease-free status in individual populations of birds. Indeed, the continued existence of these critically endangered species in the wild within or near IIT treatment areas could be considered an accomplishment of IIT, given the current predictions for their extinction in the wild within 5–10 years. Demographic monitoring methods, including territory mapping, nest monitoring, mist-netting, and mark-recapture studies, provide direct evidence of survivorship and reproductive output. When combined with disease surveillance, these approaches could provide the most robust evidence of increased survivorship and productivity resulting from avian malaria suppression via IIT. However, demographic studies require several years of monitoring to achieve statistically robust BACI comparisons of survivorship and are more difficult to implement relative to other approaches. Given that these field efforts are labor-intensive and heavily reliant on personnel availability and funding, demographic monitoring could be conducted when adequate resources permit. On both Maui and Kauaʻi, passive acoustic monitoring (PAM) was identified as a priority method for monitoring the range, occupancy, and relative abundance of focal species. Autonomous recording units (ARUs) can record bird vocalizations in remote areas for several months. Innovative machine learning techniques permit rapid and semi-autonomous identification of most endemic honeycreepers on each island, maximizing sampling efficiencies and minimizing data processing costs. We predict mosquito suppression could support expansion of focal species into areas where disease transmission is currently excluding these species and expect acoustic monitoring data of focal species to reflect these spatial patterns. Additionally, the relative occupancy and call densities can be monitored temporally and spatially to assess the efficacy of IIT for supporting positive growth in vulnerable bird species. It is not yet clear if PAM is more effective than other methods, such as distance sampling, for detecting trends in the densities of rare species. However, the increased detections resulting from the larger sample size per observation point using ARUs will likely improve accuracy in detecting changes in species’ ranges. Collection of during and after treatment data within the BACI design could help to provide critical information to track avian population response, recovery, and potential range expansion related to IIT efforts. Point-transect distance sampling (point-counts) was prioritized as a method for monitoring population densities of focal species. Extensive historical sampling across focal species’ ranges provides a robust baseline for detecting change. These counts provide updated population densities and can be used to assess the distribution of focal species within IIT treatment areas. However, detecting subtle population changes with traditional distance sampling requires intensive spatial and temporal effort and may be less effective for rare species. To improve resolution, density surface modeling can integrate multiple data sources (e.g., point-counts, PAM, spot-mapping, and resightings) to estimate species-specific densities at finer spatial scales, including within and outside IIT treatment areas. This integrated modeling approach allows for detailed comparisons and may reveal early signs of recovery, including recolonization of formerly occupied sites. A coordinated monitoring strategy can allow managers to evaluate the success of mosquito suppression as a conservation intervention and support adaptive management in the face of emerging challenges.

Hawaii

Comparison of neotropical winter bird populations in isolated patches versus extensive forest

Wintering birds were captured with mist nets at 12 pairs of forested sites in the New World tropics in 1984 and 1985 to compare populations in small isolated woodlands (generally 5-50 ha) with those in extensive forests (> 1,000 ha). Net-hours of effort were similar in large and small sites, as were total birds captured and banded, but species composition was very different. Members of the Todidae, Dendrocolaptidae, Formicariidae and Thraupinae were significantly more common in extensive forest than in small isolated tracts, indicating that these birds are especially vulnerable to effects of forest fragmentation. However, in winter many species of North American migrants, even species that are restricted to extensive forest during the breeding season, were just as common in small forest fragments as in extensive forest. A high percentage of the North American migrants banded in January 1984 (40 to 50 % for some species) were recaptured in 1985.

Acta Oecologica Oecologia Generalis

Forest management under uncertainty for multiple bird population objectives

We advocate adaptive programs of decision making and monitoring for the management of forest birds when responses by populations to management, and particularly management trade-offs among populations, are uncertain. Models are necessary components of adaptive management. Under this approach, uncertainty about the behavior of a managed system is explicitly captured in a set of alternative models. The models generate testable predictions about the response of populations to management, and monitoring data provide the basis for assessing these predictions and informing future management decisions. To illustrate these principles, we examine forest management at the Piedmont National Wildlife Refuge, where management attention is focused on the recovery of the Red-cockaded Woodpecker (Picoides borealis) population. However, managers are also sensitive to the habitat needs of many non-target organisms, including Wood Thrushes (Hylocichla mustelina) and other forest interior Neotropical migratory birds. By simulating several management policies on a set of-alternative forest and bird models, we found a decision policy that maximized a composite response by woodpeckers and Wood Thrushes despite our complete uncertainty regarding system behavior. Furthermore, we used monitoring data to update our measure of belief in each alternative model following one cycle of forest management. This reduction of uncertainty translates into a reallocation of model influence on the choice of optimal decision action at the next decision opportunity.

Book chapter

2018 Kaua'i forest bird population estimates and trends

Kaua‘i's native forest birds have experienced steep declines since the beginning of systematic surveys in 1981, and declines have accelerated in recent decades. This report details the analysis of the most recent surveys conducted in 2018. Incorporating the new survey results, long-term trends continue to show sharp declines for all native honeycreeper species with the exception of ‘apapane (Himatione sanguinea), which has stable numbers in core areas of its range. Kaua‘i ‘elepaio (Chasiempis sclateri) continued to decline in the outer portions of its range but increased in the core areas of its range. Abundance estimates of forest birds ranged from slightly higher to slightly lower in most species, indicating a relatively stable period from 2012–2018, and a pause from the rapid declines seen in earlier periods. Many native species now exist in very low numbers, and variation in estimates from survey to survey will increase.

Hawaii

Use of regional breeding bird surveys to estimate bird populations in Big Thicket National Preserve

We used data collected during surveys of seven North American Breeding Bird Survey routes in eastern Texas to estimate avian populations within Big Thicket National Preserve. On only 61 of the 350 count locations located along these routes did observers monitor birds within the boundaries of this preserve. On selected routes, we recorded initial bird detections during the 3-min bird count within 1-min time intervals and within two distance classes (≤50 or >50 m). We used these data, combined with data collected using standard Breeding Bird Survey protocols during 2009–2016, to estimate detection probabilities and effective detection radii for commonly detected species. For species often detected in flocks, we estimated these parameters for group detections. From these parameters, we estimated regional densities for 60 species. Because habitat within Big Thicket National Preserve differed from habitat along surveyed routes, for each species we adjusted the projected population estimate to account for the relationship between density of detected birds and habitat descriptors from the National Land Cover database. On the basis of our estimates of regional density of each species, and accounting for differences in habitat availability, we estimated that commonly detected avian species comprises a population of 192,201 breeding birds (95% confidence interval = 144,269–340,790) within Big Thicket National Preserve.

Texas