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At least 343 records · Page 19Linked to original sources

Habitat use by subyearling Chinook and coho salmon in Lake Ontario tributaries

The habitat use of subyearling Chinook salmon ( Oncorhynchus tshawytscha ) and coho salmon ( Oncorhynchus kisutch ) was examined in three tributaries of Lake Ontario. A total of 1781 habitat observations were made on Chinook salmon (698) and coho salmon (1083). During both spring and fall, subyearling coho salmon used pool habitat with abundant cover. During spring, principal component analysis revealed that water depth was the most important variable governing subyearling Chinook salmon habitat use. Substrate materials used by Chinook salmon in the spring and coho salmon in the fall were significantly smaller than were present on average within the study reaches. When the two species occurred sympatrically during spring they exhibited similar habitat selection. Although the habitat used by coho salmon in Lake Ontario tributaries was consistent with observations of habitat use in their native range, higher water velocities were less important to Chinook salmon than has previously been reported.

New York↗

Hydrocarbons to carboxyl-rich alicyclic molecules: A continuum model to describe biodegradation of petroleum-derived dissolved organic matter in contaminated groundwater plumes

Relationships between dissolved organic matter (DOM) reactivity and chemical composition in a groundwater plume containing petroleum-derived DOM (DOM HC ) were examined by quantitative and qualitative measurements to determine the source and chemical composition of the compounds that persist downgradient. Samples were collected from a transect down the core of the plume in the direction of groundwater flow. An exponential decrease in dissolved organic carbon concentration resulting from biodegradation along the transect correlated with a continuous shift in fluorescent DOM HC from shorter to longer wavelengths. Moreover, ultrahigh resolution mass spectrometry showed a shift from low molecular weight (MW) aliphatic, reduced compounds to high MW, unsaturated (alicyclic/aromatic), high oxygen compounds that are consistent with carboxyl-rich alicyclic molecules. The degree of condensed aromaticity increased downgradient, indicating that compounds with larger, conjugated aromatic core structures were less susceptible to biodegradation. Nuclear magnetic resonance spectroscopy showed a decrease in alkyl (particularly methyl) and an increase in aromatic/olefinic structural motifs. Collectively, data obtained from the combination of these complementary analytical techniques indicated that changes in the DOM HC composition of a groundwater plume are gradual, as relatively low molecular weight (MW), reduced, aliphatic compounds from the oil source were selectively degraded and high MW, alicyclic/aromatic, oxidized compounds persisted.

Minnesota↗

Monitoring planktivorous seabird populations: Validating surface counts of crevice-nesting auklets using mark-resight techniques

Least Auklets ( Aethia pusilla (Pallas, 1811)) are the most abundant species of seabird in the Bering Sea and offer a relatively efficient means of monitoring secondary productivity in the marine environment. Counting auklets on surface plots is the primary method used to track changes in numbers of these crevice-nesters, but counts can be highly variable and may not be representative of the number of nesting individuals. We compared average maximum counts of Least Auklets on surface plots with density estimates based on mark–resight data at a colony on St. Lawrence Island, Alaska, during 2001–2004. Estimates of breeding auklet abundance from mark–resight averaged 8 times greater than those from maximum surface counts. Our results also indicate that average maximum surface counts are poor indicators of breeding auklet abundance and do not vary consistently with auklet nesting density across the breeding colony. Estimates of Least Auklet abundance from mark–resight were sufficiently precise to meet management goals for tracking changes in seabird populations. We recommend establishing multiple permanent banding plots for mark–resight studies on colonies selected for intensive long-term monitoring. Mark–resight is more likely to detect biologically significant changes in size of auklet breeding colonies than traditional surface count techniques.

Canadian Journal of Zoology↗

Progress on water data integration and distribution: a summary of select U.S. Geological Survey data systems

Critical water-resources issues ranging from flood response to water scarcity make access to integrated water information, services, tools, and models essential. Since 1995 when the first water data web pages went online, the U.S. Geological Survey has been at the forefront of water data distribution and integration. Today, real-time and historical streamflow observations are available via web pages and a variety of web service interfaces. The Survey has built partnerships with Federal and State agencies to integrate hydrologic data providing continuous observations of surface and groundwater, temporally discrete water quality data, groundwater well logs, aquatic biology data, water availability and use information, and tools to help characterize the landscape for modeling. In this paper, we summarize the status and design patterns implemented for selected data systems. We describe how these systems contribute to a U.S. Federal Open Water Data Initiative and present some gaps and lessons learned that apply to global hydroinformatics data infrastructure.

Journal of Hydroinformatics↗

Wintering ecology of adult North American ospreys

North American Ospreys ( Pandion haliaetus ) typically migrate long distances to their wintering grounds in the tropics. Beyond the general distribution of their wintering range (i.e., the Caribbean, South America, and Central America), very little is known about the wintering ecology of these birds. We used satellite telemetry to determine the duration of wintering period, to examine the characteristics of wintering areas used by Ospreys, and to quantify space use and activity patterns of wintering Ospreys. Adult Ospreys migrated to wintering sites and exhibited high wintering site fidelity among years. Overall, Ospreys wintered on river systems (50.6%) more than on lakes (19.0%), and use of coastal areas was (30.4%) intermediate. Ospreys remained on their wintering grounds for an average of 154 d for males and 167 d for females. Locations of wintering Ospreys obtained via GPS-capable satellite telemetry suggest these birds move infrequently and their movements are very localized (i.e., 2 and 1.4 km 2 , respectively. Overall, our findings suggest wintering adult North American Ospreys are very sedentary, demonstrating a pattern of limited daily movements and high fidelity to a few select locations (presumably roosts). We suggest this wintering strategy might be effective for reducing the risk of mortality and maximizing energy conservation.

Journal of Raptor Research↗

Evaluation of relocation of unionid mussels to in situ refugia

The aim of this study was to evaluate the recovery and survival of four species of unionid mussles [pimpleback, Quadrula pustulosa pustulosa (I. Lea, 1831); spike, Elliptio dilatata (Rafinesque, 1820); Higgins eye, Lampsilis higginsii (I. Lea, 1857); and pocketbook, Lampsilis cardium (Rafinesque, 1820)] that were experimentally relocated to in situ refugia in the St Croix River of Minnesota and Wisconsin, USA. In 1996, 150 mussels of each of the first three species (450 total) were relocated to three 5 x 5 m study grids (Site A), one near Lakeland, Minnesota, which served as a source-site control, and two in the experimental refuge 48 km upstream, near Franconia, Minnesota. In a second relocation in 1997, L. Cardium was substituted for L. Higginsii and 150 mussels of this and each of the other two species (450 total), were relocated to two study grids (Site B). The source site control was near Sunrise, Minnesota and the experimental refuge was 14 km downstream near Almelund, Minnesota. Mussel recovery, survival and substratum characteristics were evaluated annually at Site A for 2 years and for 3 years at Site B. Mean annual recovery of all three species ranged from 90 to 100% at Site A, and from 34 to 70% at site B. The mean annual survival of recaptured mussels ranged from 85 to 100% at Site A, and from 88 to 100% at Site B. The textural characteristics of the substratum differed significantly between the control and the two refuge locations at the beginning of the study, but did not differ from this initial status among subsequent years at Site A. At Site B, there was a significant shift in textural characteristics from large to smaller fractions over the four years. The relatively high survival of mussels during this study demonstrates the importance of proper handling and transport protocols when relocating mussels and the selection of suitable relocation habitat with stable substratum. When established correctly, in situ refugia may be a viable tool for preserving unionid mussels.

Journal of Molluscan Studies↗

Evaluation of relocation of unionid mussels to in situ refugia

The aim of this study was to evaluate the recovery and survival of four species of unionid mussles [pimpleback, Quadrula pustulosa pustulosa (I. Lea, 1831); spike, Elliptio dilatata (Rafinesque, 1820); Higgins eye, Lampsilis higginsii (I. Lea, 1857); and pocketbook, Lampsilis cardium (Rafinesque, 1820)] that were experimentally relocated to in situ refugia in the St Croix River of Minnesota and Wisconsin, USA. In 1996, 150 mussels of each of the first three species (450 total) were relocated to three 5 ?? 5 m study grids (Site A), one near Lakeland, Minnesota, which served as a source-site control, and two in the experimental refuge 48 km upstream, near Franconia, Minnesota. In a second relocation in 1997, L. cardium was substituted for L. higginsii and 150 mussels of this and each of the other two species (450 total), were relocated to two study grids (Site B). The source site control was near Sunrise, Minnesota and the experimental refuge was 14 km downstream near Almelund, Minnesota. Mussel recovery, survival and substratum characteristics were evaluated annually at Site A for 2 years and for 3 years at Site B. Mean annual recovery of all three species ranged from 90 to 100% at Site A, and from 34 to 70% at site B. The mean annual survival of recaptured mussels ranged from 85 to 100% at Site A, and from 88 to 100% at Site B. The textural characteristics of the substratum differed significantly between the control and the two refuge locations at the beginning of the study, but did not differ from this initial status among subsequent years at Site A. At Site B, there was a significant shift in textural characteristics from large to smaller fractions over the four years. The relatively high survival of mussels during this study demonstrates the importance of proper handling and transport protocols when relocating mussels and the selection of suitable relocation habitat with stable substratum. When established correctly, in situ refugia may be a viable tool for preserving unionid mussels.

Journal of Molluscan Studies↗

Earth Stewardship: An initiative by the Ecological Society of America to foster engagement to sustain Planet Earth

The Ecological Society of America (ESA) has responded to the growing commitment among ecologists to make their science relevant to society through a series of concerted efforts, including the Sustainable Biosphere Initiative (1991), scientific assessment of ecosystem management (1996), ESA’s vision for the future (2003), Rapid Response Teams that respond to environmental crises (2005), and the Earth Stewardship Initiative (2009). During the past 25 years, ESA launched five new journals, largely reflecting the expansion of scholarship linking ecology with broader societal issues. The goal of the Earth Stewardship Initiative is to raise awareness and to explore ways for ecologists and other scientists to contribute more effectively to the sustainability of our planet. This has occurred through four approaches: (1) articulation of the stewardship concept in ESA publications and Website, (2) selection of meeting themes and symposia, (3) engagement of ESA sections in implementing the initiative, and (4) outreach beyond ecology through collaborations and demonstration projects. Collaborations include societies and groups of Earth and social scientists, practitioners and policy makers, religious and business leaders, federal agencies, and artists and writers. The Earth Stewardship Initiative is a work in progress, so next steps likely include continued nurturing of these emerging collaborations, advancing the development of sustainability and stewardship theory, improving communication of stewardship science, and identifying opportunities for scientists and civil society to take actions that move the Earth toward a more sustainable trajectory.

Book chapter↗

Bibliography on the occurrence, properties, and uses of zeolites from sedimentary deposits, 1985-1992

This bibliography is an alphabetical listing of about 2,000 publications and formal releases, including patents and selected abstracts, from the world literature on the occurrence, properties, and uses of zeolites from sedimentary deposits for the period 1985 to 1992. The bibliography is available as hard copy or on a 3.5-inch floppy diskette, which was prepared on a Macintosh LC computer using EndNote Plus software. Computer searches of the bibliography can be made by author, year, title, journal, publisher, and keywords.

Open-File Report↗

Assessment of sediment contamination at Great Lakes Areas of Concern: the ARCS Program Toxicity-Chemistry Work Group strategy

In response to a mandate in Section 118(c)(3) of the Water Quality Act of 1987, a program called Assessment and Remediation of Contaminated Sediments (ARCS) was established. Four technical work groups were formed. This paper details the research strategy of the Toxicity-Chemistry Work Group. The Work Group's general objectives are to develop survey methods and to map the degree of contamination and toxicity in bottom sediments at three study areas, which will serve as guidance for future surveys at other locations. A related objective is to use the data base that will be generated to calculate sediment quality concentrations by several methods. The information needed to achieve these goals will be collected in a series of field surveys at three areas: Saginaw Bay (MI), Grand Calumet River (IN), and Buffalo River (NY). Assessments of the extent of contamination and potential adverse effects of contaminants in sediment at each of these locations will be conducted by collecting samples for physical characterization, toxicity testing, mutagenicity testing, chemical analyses, and fish bioaccumulation assays. Fish populations will be assessed for tumors and external abnormalities, and benthic community structure will be analyzed. A mapping approach will use low-cost indicator parameters at a large number of stations, and will extrapolate by correlation from traditional chemical and biological studies at a smaller number of locations. Sediment toxicity testing includes elutriate, pore water and whole sediment bioassays in a three-tiered framework. In addition to the regular series of toxicity tests at primary mater stations, some stations are selected for a more extensive suite of tests.

Journal of Aquatic Ecosystem Health↗

Recovery of Renibacterium salmoninarum from naturally infected salmonine stocks in Michigan using a modified culture protocol

Renibacterium salmoninarum, the causative agent of bacterial kidney disease (BKD), is a fastidious and slow-growing bacterium that is extremely difficult to grow in vitro. Herein, we describe a modified primary culture protocol that encompasses a modified bacteriological culture medium and a tissue processing procedure. In order to facilitate the release of R. salmoninarum from granulomatous tissues, kidneys of infected fish were homogenized in a high speed stomacher. The kidney disease medium (KDM2), routinely used for primary culture of R. salmoninarum was modified by the addition of antibiotics and metabolites. When a relatively large inoculum of diluted kidney homogenate was streak-plate inoculated onto the modified KDM2, colonial growth of R. salmoninarum was achieved within 5-7. days, compared to the standard of two weeks or more. The modified procedure was then used to determine the prevalence of R. salmoninarum among representative captive and feral salmonid stocks in Michigan. Prevalence and clinical manifestations varied among species, strains of fish, and locations; however, R. salmoninarum isolates were biochemically homogenous. The improved primary culture procedure described in this study enabled selective and quick isolation of R. salmoninarum. Also, the isolates retrieved in this study constitute a unique biological resource for future studies of R. salmoninarum in the Laurentian Great Lakes. ?? 2009 University of Cairo.

Journal of Advanced Research↗

Search for life on Mars in surface samples: Lessons from the 1999 Marsokhod rover field experiment

The Marsokhod 1999 field experiment in the Mojave Desert included a simulation of a rover-based sample selection mission. As part of this mission, a test was made of strategies and analytical techniques for identifying past or present life in environments expected to be present on Mars. A combination of visual clues from high-resolution images and the detection of an important biomolecule (chlorophyll) with visible/near-infrared (NIR) spectroscopy led to the successful identification of a rock with evidence of cryptoendolithic organisms. The sample was identified in high-resolution images (3 times the resolution of the Imager for Mars Pathfinder camera) on the basis of a green tinge and textural information suggesting the presence of a thin, partially missing exfoliating layer revealing the organisms. The presence of chlorophyll bands in similar samples was observed in visible/NIR spectra of samples in the field and later confirmed in the laboratory using the same spectrometer. Raman spectroscopy in the laboratory, simulating a remote measurement technique, also detected evidence of carotenoids in samples from the same area. Laboratory analysis confirmed that the subsurface layer of the rock is inhabited by a community of coccoid Chroococcidioposis cyanobacteria. The identification of minerals in the field, including carbonates and serpentine, that are associated with aqueous processes was also demonstrated using the visible/NIR spectrometer. Other lessons learned that are applicable to future rover missions include the benefits of web-based programs for target selection and for daily mission planning and the need for involvement of the science team in optimizing image compression schemes based on the retention of visual signature characteristics.

California↗

Occam's shadow: levels of analysis in evolutionary ecology - where to next?

Evolutionary ecology is the study of evolutionary processes, and the ecological conditions that influence them. A fundamental paradigm underlying the study of evolution is natural selection. Although there are a variety of operational definitions for natural selection in the literature, perhaps the most general one is that which characterizes selection as the process whereby heritable variation in fitness associated with variation in one or more phenotypic traits leads to intergenerational change in the frequency distribution of those traits. The past 20 years have witnessed a marked increase in the precision and reliability of our ability to estimate one or more components of fitness and characterize natural selection in wild populations, owing particularly to significant advances in methods for analysis of data from marked individuals. In this paper, we focus on several issues that we believe are important considerations for the application and development of these methods in the context of addressing questions in evolutionary ecology. First, our traditional approach to estimation often rests upon analysis of aggregates of individuals, which in the wild may reflect increasingly non-random (selected) samples with respect to the trait(s) of interest. In some cases, analysis at the aggregate level, rather than the individual level, may obscure important patterns. While there are a growing number of analytical tools available to estimate parameters at the individual level, and which can cope (to varying degrees) with progressive selection of the sample, the advent of new methods does not reduce the need to consider carefully the appropriate level of analysis in the first place. Estimation should be motivated a priori by strong theoretical analysis. Doing so provides clear guidance, in terms of both (i) assisting in the identification of realistic and meaningful models to include in the candidate model set, and (ii) providing the appropriate context under which the results are interpreted. Second, while it is true that selection (as defined) operates at the level of the individual, the selection gradient is often (if not generally) conditional on the abundance of the population. As such, it may be important to consider estimating transition rates conditional on both the parameter values of the other individuals in the population (or at least their distribution), and population abundance. This will undoubtedly pose a considerable challenge, for both single- and multi-strata applications. It will also require renewed consideration of the estimation of abundance, especially for open populations. Thirdly, selection typically operates on dynamic, individually varying traits. Such estimation may require characterizing fitness in terms of individual plasticity in one or more state variables, constituting analysis of the norms of reaction of individuals to variable environments. This can be quite complex, especially for traits that are under facultative control. Recent work has indicated that the pattern of selection on such traits is conditional on the relative rates of movement among and frequency of spatially heterogeneous habitats, suggesting analyses of evolution of life histories in open populations can be misleading in some cases.

Journal of Applied Statistics↗

Spawning habitat selection of hickory shad

We examined the spawning habitat selectivity of hickory shad Alosa mediocris , an anadromous species on the Atlantic coast of North America. Using plankton tows and artificial substrates (spawning pads), we collected hickory shad eggs in the Roanoke River, North Carolina, to identify spawning timing, temperature, and microhabitat use. Hickory shad eggs were collected by both sampling gears in March and April. The results from this and three other studies in North Carolina indicate that spawning peaks at water temperatures between 12.0°C and 14.9°C and that approximately 90% occurs between 11.0°C and 18.9°C. Hickory shad eggs were collected in run and riffle habitats. Water velocity and substrate were significantly different at spawning pads with eggs than at those without eggs, suggesting that these are important microhabitat factors for spawning. Hickory shad eggs were usually collected in velocities of at least 0.1 m/s and on all substrates except those dominated by silt. Eggs were most abundant on gravel, cobble, and boulder substrates. Hickory shad spawned further upstream in years when water discharge rates at Roanoke Rapids were approximately average during March and April (2005 and 2007), as compared with a severe drought year (2006), suggesting that water flows may affect not only spawning site selection but also the quantity and quality of spawning habitat available at a macrohabitat scale. Using our field data and a Bayesian approach to resource selection analysis, we developed a preliminary habitat suitability model for hickory shad. This Bayesian approach provides an objective framework for updating the model as future studies of hickory shad spawning habitat are conducted.

North Carolina↗

Colonizing the world in spite of reduced MHC variation

Reduced immune gene diversity is thought to negatively affect the capacity of organisms to adapt to pathogen challenges, which represent a major force in natural selection. Genes of the Major Histocompatibility Complex (MHC) are the most widely invoked adaptive loci in conservation biology, and have become the most popular genetic markers to investigate pathogen-host interactions in vertebrates. Although MHC genes are the most polymorphic genes described in the vertebrate genome, the extent to which MHC diversity determines the long-term persistence of populations is, unclear and often debated, as recent studies have documented the occurrence of natural populations thriving even after a depletion of MHC diversity caused by genetic drift. Here, we show that some phylogenetically related species belonging to the Falco genus (Aves: Falconidae) present a dramatically low MHC variability that has not precluded, nevertheless, the successful colonization of almost all existing regions and habitats worldwide. We found evidence for two remarkably different patterns of MHC variation within the genus. While kestrels show a high MHC variation according to the general theory, falcons exhibit an ancestrally low intra- and inter-specific MHC allelic diversity. We provide compelling evidence that this pattern is not caused by the degeneration of functional genes into pseudogenes, the inadvertent analyses of paralogous MHC genes, or the devastating action of genetic drift. Instead, our results strongly support the idea of an evolutionary transition driven and maintained by natural selection from primarily highly variable towards low polymorphic, but functional and expressed, MHC genes with species-specific pathogen-recognition capabilities.

Journal of Evolutionary Biology↗

Evaluation of an aerial survey of Pacific walruses

An aerial survey of Pacific walruses ( Odobenus rosmarus divergens ) was evaluated to determine the reliability of estimates of population abundance. The probability of detecting groups of walruses on the pack ice remained uniform to at least 0.93 km from the flight line, whereas the probability of detection decreased significantly beyond 0.23 km for walruses in the water. Walruses were more abundant along the ice-edge zone between 162 and 165°W than in other areas of the Chukchi Sea during September 1975. Few walruses were observed in consolidated pack ice north of the ice-edge zone or in ice-free water to the south. More walrus groups and larger mean group size were observed on September 8 than on other days. We estimated abundance for each day and all days combined using methods based on sample area and numbers of strip samples. Estimates varied among days by over an order of magnitude; this variation is attributed to the combined effect of chance sampling of an aggregated population and variation in the fraction of walruses hauled out. The coefficient of variation of the estimates ranged between 0.25 and 0.99. This imprecision was due to the aggregated distribution of walruses and the large variation in group size. Using the survey data as a basis for stratification, we calculated that, due to the high variability within strata, a sample size of 40% of the total area or 56% of the total available strips would be required to obtain 95% confidence limits within 10% of the estimate of total abundance. Variation contributed by observer error in estimating group size also is relatively unimportant to the precision of abundance estimates. Studies of natural history, particularly those oriented toward activity and habitat selection, would help investigators estimate bias due to the variable fraction hauled out and design surveys based on meaningful strata. Estimates of total abundance based on limited survey efforts will provide information of little reliability.

Journal of the Fisheries Research Board of Canada↗

Forest Succession and Maternity Day roost selection by Myotis septentrionalis in a mesophytic hardwood forest

Conservation of summer maternity roosts is considered critical for bat management in North America, yet many aspects of the physical and environmental factors that drive roost selection are poorly understood. We tracked 58 female northern bats ( Myotis septentrionalis ) to 105 roost trees of 21 species on the Fort Knox military reservation in north-central Kentucky during the summer of 2011. Sassafras ( Sassafras albidum ) was used as a day roost more than expected based on forest stand-level availability and accounted for 48.6% of all observed day roosts. Using logistic regression and an information theoretic approach, we were unable to reliably differentiate between sassafras and other roost species or between day roosts used during different maternity periods using models representative of individual tree metrics, site metrics, topographic location, or combinations of these factors. For northern bats, we suggest that day-roost selection is not a function of differences between individual tree species per se , but rather of forest successional patterns, stand and tree structure. Present successional trajectories may not provide this particular selected structure again without management intervention, thereby suggesting that resource managers take a relatively long retrospective view to manage current and future forest conditions for bats.

Kentucky↗

A subset of CyberShake ground-motion time series for response-history analysis

This manuscript describes a subset of CyberShake numerically simulated ground motions that were selected and vetted for use in engineering response-history analyses. Ground motions were selected that have seismological properties and response spectra representative of conditions in the Los Angeles area, based on disaggregation of seismic hazard. Ground motions were selected from millions of available time series and were reviewed to confirm their suitability for response-history analysis. The processes used to select the time series, the characteristics of the resulting data, and the provided documentation are described in this article. The resulting data and documentation are available electronically.

California↗