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Studies by the U.S. Geological Survey in Alaska, 2008-2009
The collection of papers that follow continues the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. This series represents new and sometimes-preliminary findings that are of interest to Earth scientists in academia, government, and industry; to land and resource managers; and to the general public. The reports presented in Studies by the U.S. Geological Survey in Alaska cover a broad spectrum of topics from various parts of the State, serving to emphasize the diversity of USGS efforts to meet the Nation's needs for Earth-science information in Alaska. This professional paper is one of a series of 'online only' versions of Studies by the U.S. Geological Survey in Alaska, reflecting the current trend toward disseminating research results on the World Wide Web with rapid posting of completed reports.
Bird collections in the United States and Canada
This survey was initiated in 1966 as a project of a subcommittee of the A.O.U.'s Committee on Research, at that time chaired by Paul H. Baldwin. The subcommittee consisted of the authors and Ralph J. Raitt. In 1968 the project was separated from the Committee on Research and the temporary Committee on Collections was established, with the present authors as its members. This paper is the final report of the committee. In the past, many studies utilizing museum materials have been handicapped by ignorance of the existence of potentially important specimens. We hoped, by means of this survey, to enable future workers to take full advantage of all available material. The objectives of the survey were to determine the locations of collections of ornithological material with research potential, particularly skins, skeletons, fluid-preserved specimens, eggs, and nests; to assess the sizes and particular geographic or systematic strengths of the various collections; to locate former private collections; to learn what collections include holotypes, and who is responsible for the collections. These basic points are generally well-known for the larger institutions that specialize in maintaining research collections, but not for many smaller collections containing valuable material. The survey was inspired by and patterned after a series made of mammal collections (see Anderson et al. 1963, J. Mammal. 44: 471-500).
Ecosystem management: A decision support GIS approach
This paper describes a new approach using decision support GIS for handling information in ecosystem management. Technical research efforts resulted in specialized spatial decision support systems for wetland restoration planning, wetland permit analysis, and wildlife research and management. These applications are briefly presented to illustrate the usage of the methodology. With its powerful capabilities in information synthesis, analytical visualization, and spatial simulation and modeling, the decision support GIS provided cost-effective technical tools and a conceptual framework for integrating natural resource management with an ecosystem approach.
Toward the next generation of research on earthquake-induced landslides: Current issues and future challenges
Although, thanks to the new developments in investigation techniques, modeling, and data analyses, much progress has been made in our understanding of collateral seismic hazards, important new lessons are still being learned from historic and recent earthquakes. By referring to the accompanying papers included in this Special Issue and other recent literature, we present an overview of current issues and future challenges of research on earthquake, triggered landsliding. We also offer some recommendations for future research priorities, as a proposed starting point for the next generation of research on earthquake-induced slope failures. These include i) the compilation of many more complete seismic landslide inventories with adequate contextual information, as well as of retrospective inventories; ii) the improvement of regional-scale assessments of seismic landslide susceptibility and hazard; iii) the development of new methods for regional scale analysis of hazards from large catastrophic landslides; and iv) the long-term monitoring of representative test slopes instrumented with an array of accelerometer stations.
Application of the technology readiness levels framework to natural resource management tools
Technology advancements in fisheries science can provide useful tools to support natural resource management and conservation. However, new technologies may also present challenges for decision makers due to the lack of a standardized process to assess technologies for consideration within management plans. Future technology development in fishery and water resources could benefit from a framework that assigns an appropriate technology development stage and defines the readiness for implementation. Technology Readiness Levels (TRL) are one established research and development scale used throughout engineering and related disciplines that could be applied to natural resource management tools. The TRL assess the maturity of a technology from nascent idea through a fully developed technology. Steps within this scale could provide a general framework for researchers to follow when planning and conducting studies, while similarly providing a standard scale for resource managers to assess readiness for technology transfer and implementation. The goal of this paper is to describe TRL in the context of natural resource management tools and offer this existing framework as one option to facilitate communication between researchers and managers.
Partners in Flight research needs assessment summary
An important component of the PIF International Conference in McAllen, TX in February 2008 was the incorporation of a Needs Assessment Process in all of the conference sessions. Throughout the McAllen sessions, a number of critical information gaps were identified, pointing to future research that will be needed to establish bird conservation objectives and accomplish bird conservation goals. This document is a summary of the research needs topics identified in the McAllen sessions, placed in the larger context of PIF research needs information. This summary is not intended to be a comprehensive evaluation of landbird research needs, nor a literature review or synthesis of such research needs and research topics. This report was developed by compiling and organizing the research needs identified in McAllen (Rich et al. 2008) and then placing the needs within the context of other PIF-related documents that have identified research needs.
New high resolution airborne geophysical surveys in Nevada And California for geothermal and mineral resource studies
The U.S. Geological Survey (USGS) and the Department of Energy (DOE) are collaborating to acquire high-resolution airborne magnetic and radiometric data to support geologic and geophysical mapping and modeling that will assist geothermal and critical mineral studies. Coordinated with these efforts are programs supporting geologic mapping and airborne LiDAR (light detection and ranging) surveys that yield detailed surface topographic models of the terrain over the same regions spanned by the geophysical surveys. The collaboration leverages resources from the USGS and DOE to acquire large regional datasets that will provide fundamental data necessary to map surface and subsurface geology and structure to benefit mineral and resource program objectives of both agencies. Such regionally uniform datasets are important for geothermal research to assist in identifying geologically favorable settings and as invaluable inputs in predictive models targeting undiscovered resources that use knowledge-driven (e.g., play fairway analysis) or data-driven approaches (e.g., machine-learning methods) to reduce risk associated with resource exploration. These data will also serve a wide range of other related activities from hazard (earthquake, volcano, landslide, environmental) and resource (water, mineral, energy) studies, to mapping and land management. Surveys were conducted in two areas that were selected because they host substantial geothermal and mineral potential in California and Nevada. The data will aid several ongoing USGS and DOE projects aimed at characterizing geothermal and mineral systems, understanding the factors controlling their occurrence, and improving future national resource assessments. The first of these surveys (referred to as GeoDAWN) was collected over northern and western Nevada and eastern California and spans areas of major resource potential associated with the Walker Lane and western Great Basin. This includes Clayton Valley, which hosts substantial lithium brine and clay resources, and the Humboldt Mafic Complex, which constitutes a potentially important resource of critical minerals (including cobalt, rare earth elements, platinum group elements, iron, chromium, nickel, and copper). The second survey area (referred to as GeoFlight) is focused over the Salton Trough in southern California that contains some of the largest and hottest known hydrothermal systems in the world, as well as a substantial lithium brine resource that could potentially meet the nation’s lithium demand for electric vehicles. Data from both surveys will be made publicly available through USGS publications and online data repositories. Future efforts under this collaboration are presently being evaluated and may involve acquisition of other data sets such as airborne gravity, electromagnetic or hyperspectral data to address research targets.
GCIP water and energy budget synthesis (WEBS)
As part of the World Climate Research Program's (WCRPs) Global Energy and Water-Cycle Experiment (GEWEX) Continental-scale International Project (GCIP), a preliminary water and energy budget synthesis (WEBS) was developed for the period 1996-1999 fromthe "best available" observations and models. Besides this summary paper, a companion CD-ROM with more extensive discussion, figures, tables, and raw data is available to the interested researcher from the GEWEX project office, the GAPP project office, or the first author. An updated online version of the CD-ROM is also available at http://ecpc.ucsd.edu/gcip/webs.htm/. Observations cannot adequately characterize or "close" budgets since too many fundamental processes are missing. Models that properly represent the many complicated atmospheric and near-surface interactions are also required. This preliminary synthesis therefore included a representative global general circulation model, regional climate model, and a macroscale hydrologic model as well as a global reanalysis and a regional analysis. By the qualitative agreement among the models and available observations, it did appear that we now qualitatively understand water and energy budgets of the Mississippi River Basin. However, there is still much quantitative uncertainty. In that regard, there did appear to be a clear advantage to using a regional analysis over a global analysis or a regional simulation over a global simulation to describe the Mississippi River Basin water and energy budgets. There also appeared to be some advantage to using a macroscale hydrologic model for at least the surface water budgets. Copyright 2003 by the American Geophysical Union.
Global research priorities to mitigate plastic pollution impacts on marine wildlife
Marine wildlife faces a growing number of threats across the globe, and the survival of many species and populations will be dependent on conservation action. One threat in particular that has emerged over the last 4 decades is the pollution of oceanic and coastal habitats with plastic debris. The increased occurrence of plastics in marine ecosystems mirrors the increased prevalence of plastics in society, and reflects the high durability and persistence of plastics in the environment. In an effort to guide future research and assist mitigation approaches to marine conservation, we have generated a list of 16 priority research questions based on the expert opinions of 26 researchers from around the world, whose research expertise spans several disciplines, and covers each of the world’s oceans and the taxa most at risk from plastic pollution. This paper highlights a growing concern related to threats posed to marine wildlife from microplastics and fragmented debris, the need for data at scales relevant to management, and the urgent need to develop interdisciplinary research and management partnerships to limit the release of plastics into the environment and curb the future impacts of plastic pollution.
Studies by the U.S. Geological Survey in Alaska, 2007
The collection of papers that follow continues the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. This series represents new and sometimes-preliminary findings that are of interest to Earth scientists in academia, government, and industry; to land and resource managers; and to the general public. The reports presented in Studies by the U.S. Geological Survey in Alaska cover a broad spectrum of topics from various parts of the State, serving to emphasize the diversity of USGS efforts to meet the Nation's needs for Earth-science information in Alaska. This professional paper is one of a series of 'online only' versions of Studies by the U.S. Geological Survey in Alaska, reflecting the current trend toward disseminating research results on the World Wide Web with rapid posting of completed reports.
Engineering uses of physics-based ground motion simulations
This paper summarizes validation methodologies focused on enabling ground motion simulations to be used with confidence in engineering applications such as seismic hazard analysis and dynmaic analysis of structural and geotechnical systems. Numberical simullation of ground motion from large erthquakes, utilizing physics-based models of earthquake rupture and wave propagation, is an area of active research in the earth science community. Refinement and validatoin of these models require collaboration between earthquake scientists and engineering users, and testing/rating methodolgies for simulated ground motions to be used with confidence in engineering applications. This paper provides an introduction to this field and an overview of current research activities being coordinated by the Souther California Earthquake Center (SCEC). These activities are related both to advancing the science and computational infrastructure needed to produce ground motion simulations, as well as to engineering validation procedures. Current research areas and anticipated future achievements are also discussed.
Accessibility of environmental data for sharing: The role of UX in large cyberinfrastructure projects
Incorporating user experience (UX) testing when creating research cyberinfrastructure is often overlooked, but if left too late, the cost of retrofitting is considerable, and the very clients the cyberinfrastructure was built to serve may be lost. Successfully integrating UX testing into the product development cycle can be difficult but rewarding. This paper describes how UX evaluations were incorporated over ten years of operation of DataONE ( www.dataone.org ), a multi-sector science research cyberinfrastructure project created to support the discovery, access, and sustainability of data about life on Earth and the environment that sustains it. The diverse stakeholders in DataONE include data creators and users such as researchers and government workers across the broad scope of the earth and environmental sciences as well as those who hold and manage data such as libraries and data repositories. Between 2009 and 2019 DataONE members designed and constructed data management tools and services to fulfill the DataONE objectives. To assist in achieving its goals, a participatory design approach was used by establishing several largely volunteer and stakeholder-representative working groups, including the Usability and Assessment Working Group. This Working Group conducted over forty UX evaluations to assess the usability of DataONE products and websites at various stages of the development process. In addition to improving the usability of DataONE products, the UX evaluations fostered community involvement by building trust and engagement with the products being developed. The DataONE UX experience yields several important lessons which will improve the success of other projects. It is our conclusion that UX testing should be a mandatory part of the design of any cyberinfrastructure project.
Studies by the U.S. Geological Survey in Alaska, 2011
The collection of papers that follow continues the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. This series represents new and sometimes-preliminary findings that are of interest to Earth scientists in academia, government, and industry; to land and resource managers; and to the general public. The reports presented in Studies by the U.S. Geological Survey in Alaska cover a broad spectrum of topics from various parts of the State, serving to emphasize the diversity of USGS efforts to meet the Nation's needs for Earth-science information in Alaska. This professional paper is one of a series of "online only" versions of Studies by the U.S. Geological Survey in Alaska , reflecting the current trend toward disseminating research results on the World Wide Web with rapid posting of completed reports.
A U.S.-China EcoPartnership study of disturbed wetland vegetation in West Dongting Lake, China
West Dongting Lake in China is important for human livelihoods and habitat of migratory waterfowl and other wildlife. The waterway re-engineering and agriculture intensification have contributed to changes in hydrology, sediment, and vegetation on the floodplain. This paper describes an EcoPartnership program conducted by the U.S. Geological Survey, Wetland and Aquatic Research Center, and Beijing Forestry University. It focused on the development of a wetland ecosystem network in West Dongting Lake with technical support from the U.S. partner using a number of related studies to examine wetland vegetation dynamics from upstream to downstream along the tributaries. The results of U.S. studies showed that the regeneration potential of species might be altered by changes in climate and local environment, and seed bank depletion by germination may be a major conservation threat in a future with recurring droughts in swamps of the southeastern United States. In the monsoonal wetlands of West Dongting Lake, the soil seed bank could be used as a seed source for revegetation after hydrologic restoration with the introduction of certain foundational species and the removal of poplar plantations. Also, West Dongting Lake is at high ecological risk of mercury pollution. Wetland ecosystem monitoring may allow managers to use the information to predict effects of climate change, water level and flow changes on sedimentation, and to manage for desired vegetation to support waterfowl and ecosystem services. The cooperation of two countries through the EcoPartnership program is now well established and poised for extensive research projects in the future.
Recommended approaches to the scientific evaluation of ecotoxicological hazards and risks of endocrine-active substances
A SETAC Pellston Workshop ® “Environmental Hazard and Risk Assessment Approaches for Endocrine-Active Substances (EHRA)” was held in February 2016 in Pensacola, Florida, USA. The primary objective of the workshop was to provide advice, based on current scientific understanding, to regulators and policy makers; the aim being to make considered, informed decisions on whether to select an ecotoxicological hazard- or a risk-based approach for regulating a given endocrine-disrupting substance (EDS) under review. The workshop additionally considered recent developments in the identification of EDS. Case studies were undertaken on 6 endocrine-active substances (EAS—not necessarily proven EDS, but substances known to interact directly with the endocrine system) that are representative of a range of perturbations of the endocrine system and considered to be data rich in relevant information at multiple biological levels of organization for 1 or more ecologically relevant taxa. The substances selected were 17α-ethinylestradiol, perchlorate, propiconazole, 17β-trenbolone, tributyltin, and vinclozolin. The 6 case studies were not comprehensive safety evaluations but provided foundations for clarifying key issues and procedures that should be considered when assessing the ecotoxicological hazards and risks of EAS and EDS. The workshop also highlighted areas of scientific uncertainty, and made specific recommendations for research and methods-development to resolve some of the identified issues. The present paper provides broad guidance for scientists in regulatory authorities, industry, and academia on issues likely to arise during the ecotoxicological hazard and risk assessment of EAS and EDS. The primary conclusion of this paper, and of the SETAC Pellston Workshop on which it is based, is that if data on environmental exposure, effects on sensitive species and life-stages, delayed effects, and effects at low concentrations are robust, initiating environmental risk assessment of EDS is scientifically sound and sufficiently reliable and protective of the environment. In the absence of such data, assessment on the basis of hazard is scientifically justified until such time as relevant new information is available.
Techniques to improve ecological interpretability of black box machine learning models
Statistical modeling of ecological data is often faced with a large number of variables as well as possible nonlinear relationships and higher-order interaction effects. Gradient boosted trees (GBT) have been successful in addressing these issues and have shown a good predictive performance in modeling nonlinear relationships, in particular in classification settings with a categorical response variable. They also tend to be robust against outliers. However, their black-box nature makes it difficult to interpret these models. We introduce several recently developed statistical tools to the environmental research community in order to advance interpretation of these black-box models. To analyze the properties of the tools, we applied gradient boosted trees to investigate biological health of streams within the contiguous USA, as measured by a benthic macroinvertebrate biotic index. Based on these data and a simulation study, we demonstrate the advantages and limitations of partial dependence plots (PDP), individual conditional expectation (ICE) curves and accumulated local effects (ALE) in their ability to identify covariate–response relationships. Additionally, interaction effects were quantified according to interaction strength (IAS) and Friedman’s H 2 "> H 2 statistic. Interpretable machine learning techniques are useful tools to open the black-box of gradient boosted trees in the environmental sciences. This finding is supported by our case study on the effect of impervious surface on the benthic condition, which agrees with previous results in the literature. Overall, the most important variables were ecoregion, bed stability, watershed area, riparian vegetation and catchment slope. These variables were also present in most identified interaction effects. In conclusion, graphical tools (PDP, ICE, ALE) enable visualization and easier interpretation of GBT but should be supported by analytical statistical measures. Future methodological research is needed to investigate the properties of interaction tests. Supplementary materials accompanying this paper appear on-line.