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USGS2006

The relationship between pH and community structure of invertebrates in streams of the Shenandoah National Park, Virginia

1. A replicated natural experiment was used to assess the influence of pH and low alkalinity on abundance and richness of invertebrate families in streams draining catchments that receive acid deposition. Individual streams were used as the unit of replication, allowing conclusions to refer to a class of streams rather than to particular streams. 2. We also controlled for several factors other than pH and alkalinity, including flow and temperature, that are recognized as determinants of invertebrate distribution. Samples were from indigenous rocks, standardized for size, surface area, and geology. 3. Repeated measures analyses of variance (ANOVA) revealed that invertebrate abundance and richness were significantly lower at pH 5.8 than at pH 7.1 for the total community. Thirty per cent of the forty‐seven families exhibited significantly lower abundance at pH 5.8; thirteen families were absent at pH 5.8. Differences were greatest for Ephemeroptera: species richness was significantly lower at pH 5.8, and 71% of the twenty‐four species were either absent (seven) or found in reduced abundance (ten) in the acidic streams. 4. Stream alkalinity is projected to continue to decrease with continued acid deposition in the Shenandoah National Park. Concurrent decreases in pH may lead to the absence or continued numerical decline of certain Ephemeroptera species in streams that acidify to less than pH 6.0 and/or 50μEql −1 alkalinity.

Virginia↗

USGS2005

Assessing mercury exposure and effects to American dippers in headwater streams near mining sites

To evaluate mercury (Hg) exposure and possible adverse effects of Hg on American dipper ( Cinclus mexicanus ) reproduction, we collected eggs and nestling feathers and the larval/nymph form of three Orders of aquatic macroinvertebrates (Ephemeroptera, Plecoptera and Trichoptera = EPT) important in their diet from three major headwater tributaries of the upper Willamette River, Oregon in 2002. The Coast Fork Willamette River is contaminated with Hg due to historical cinnabar (HgS) mining at the Black Butte Mine; the Row River is affected by past gold-mining operations located within the Bohemia Mining District, where Hg was used in the amalgamation process to recover gold; and the Middle Fork Willamette River is the reference area with no known mining. Methyl mercury (MeHg) concentrations (geometric mean) in composite EPT larvae (111.9 ng/g dry weight [dw] or 19.8 ng/g wet weight [ww]), dipper eggs (38.5 ng/g ww) and nestling feathers (1158 ng/g ww) collected from the Coast Fork Willamette were significantly higher than MeHg concentrations in EPT and dipper samples from other streams. Total mercury (THg) concentrations in surface sediments along the same Hg-impacted streams were investigated by others in 1999 (Row River tributaries) and 2002 (Coast Fork). The reported sediment THg concentrations paralleled our biological findings. Dipper breeding territories at higher elevations had fewer second clutches; however, dipper reproductive success along all streams (including the lower elevation and most Hg-contaminated Coast Fork), was judged excellent compared to other studies reviewed. Furthermore, MeHg concentrations in EPT samples from this study were well below dietary concentrations in other aquatic bird species, such as loons and ducks, reported to cause Hg-related reproductive problems. Our data suggest that either dipper feathers or EPT composites used to project MeHg concentrations in dipper feathers (with biomagnification factor of 10–20×) may be used, but with caution, to screen headwater streams for potential Hg-related effects on dippers. When actual feather concentrations or projected feather concentrations are equal to or lower than concentrations reported for the Coast Fork, dippers are expected to reproduce well (assuming adequate prey and suitable nest sites). When Hg concentrations are substantially higher, more detailed investigations may be required. Birds feeding almost exclusively on fish (e.g., osprey [ Pandion haliaetus ]) and usually found further downstream from the headwaters would not be adequately represented by dippers given the higher MeHg concentrations in fish resulting from biomagnification, compared to lower trophic level invertebrates.

Oregon↗

USGS2010

Assessing macroinvertebrate biodiversity in freshwater ecosystems: Advances and challenges in dna-based approaches

Assessing the biodiversity of macroinvertebrate fauna in freshwater ecosystems is an essential component of both basic ecological inquiry and applied ecological assessments. Aspects of taxonomic diversity and composition in freshwater communities are widely used to quantify water quality and measure the efficacy of remediation and restoration efforts. The accuracy and precision of biodiversity assessments based on standard morphological identifications are often limited by taxonomic resolution and sample size. Morphologically based identifications are laborious and costly, significantly constraining the sample sizes that can be processed. We suggest that the development of an assay platform based on DNA signatures will increase the precision and ease of quantifying biodiversity in freshwater ecosystems. Advances in this area will be particularly relevant for benthic and planktonic invertebrates, which are often monitored by regulatory agencies. Adopting a genetic assessment platform will alleviate some of the current limitations to biodiversity assessment strategies. We discuss the benefits and challenges associated with DNA-based assessments and the methods that are currently available. As recent advances in microarray and next-generation sequencing technologies will facilitate a transition to DNA-based assessment approaches, future research efforts should focus on methods for data collection, assay platform development, establishing linkages between DNA signatures and well-resolved taxonomies, and bioinformatics. ?? 2010 by The University of Chicago Press.

The Quarterly Review of Biology↗

USGS2022

New-generation pesticides are prevalent in California's Central Coast streams

Pesticides are widely recognized as important biological stressors in streams, especially in heavily developed urban and agricultural areas like the Central California Coast region. We assessed occurrence and potential toxicity of pesticides in small streams in the region using two analytical methods: a broad-spectrum (223 compounds) method in use since 2012 and a newly developed method for 30 additional new-generation fungicides and insecticides. At least one pesticide compound was identified in 83 of the 85 streams sampled. About one-half (48%) of the 253 pesticides measured were detected at least once and 27 were detected in 10% or more of samples. Three of the top 4, and 6 of the top 10 most frequently detected compounds (chlorantraniliprole, dinotefuran, boscalid, thiamethoxam, clothianidin and the fluopicolide degradate 2,6-dichlorobenzamide) were analyzed by the new method. Pesticide mixtures were common, with two or more pesticide compounds detected in 81% of samples and 10 or more in 32% of samples. The pesticide count at a site was relatively consistent over the 6-week study. Four sites with mixed land-use in the lower basin (<5 km from the sampling site) tended to have the highest pesticide counts and the highest concentrations. Potential toxicity (assessed by comparison to benchmarks) to invertebrates was much more common than potential toxicity to fish or plants and was associated with a wide array of insecticides. The common occurrence of new-generation pesticides highlights the need to continuously update analytical methods to keep pace with changing pesticide use for a fuller assessment of pesticide occurrence and effects on the environment.

California↗

USGS1989

Prairie basin wetlands of the Dakotas: a community profile

This description of prairie basin wetlands of the Dakotas is part of a series of community profiles on ecologically important wetlands of national significance. The shallow wetlands of the Dakotas form the bulk of the portion of the Prairie Pothole Region lying within the United States. This region is famous as the producer of at least half of North America's waterfowl and an unknown, but large, proportion of other prairie-dwelling marsh and aquatic birds.The wetlands described here lie in relatively small, shallow basins that vary greatly in their ability to maintain surface water, and in their water chemistry, which varies from fresh to hypersaline. These wetlands occur in a wide variety of hydrological settings, in an area where annual and seasonal precipitation varies greatly in form and amount. Thus the presence of surface water in these wetlands is largely unpredictable. Superimposed on these phenomena are the effects of a variety of land uses, including pasture, cultivation, mechanical forage removal, idle conditions and burning. All those factors greatly affect the plant and animal communities found in these basins.This profile covers lacustrine and palustrine basins with temporarily flooded, seasonally flooded, and semipermanently flooded water regimes. Basins with these water regimes compose about 90% of the basins in the Prairie Pothole Region of the Dakotas. This profile outlines the wetland subsystems, classes and subclasses that occur in these basins, and provides a useful reference to their geologic, climatic, hydrologic, and pedologic setting.Detailed information on the biotic environment of the wetlands dealt with in this profile will be useful to scientists and resource managers. Special recognition is paid to the macrophyte and invertebrate communities, which have dynamic qualities found in few other of the world's wetland ecosystems.The most noteworthy animal inhabitants of these basins are waterfowl, which are a resource of international concern. Because of the importance of this resource, much research on the habitat use and feeding ecology of breeding waterfowl has been conducted in the region. These topics receive special attention in this profile.The Prairie Pothole Region is a major world supplier of cereal grains. Consequently, wetlands in the region are often drained for crop production or otherwise cropped when water conditions permit. These practices degrade the value of wetlands for most species of wildlife and conflict with the aims of conservationists. The subject of human uses and impacts to prairie wetlands is thus an important part of this profile.

Biological Report↗

USGS2020

Diversity of diatoms, benthic macroinvertebrates, and fish varies in response to different environmental correlates in Arctic rivers across North America

Climate change poses a significant threat to Arctic freshwater biodiversity, but impacts depend upon the strength of organism response to climate‐related drivers. Currently, there is insufficient knowledge about Arctic freshwater biodiversity patterns to guide assessment, prediction, and management of biodiversity change. As part of the Circumpolar Biodiversity Monitoring Program's first freshwater assessment, we evaluated diversity of diatoms, benthic macroinvertebrates, and fish in North American Arctic rivers. Alpha diversity was assessed in relation to temperature, water chemistry, bedrock geology, and glaciation history to identify important environmental correlates. Biotic composition was compared among groups to evaluate response to environmental gradients. Macroinvertebrate α‐diversity declined strongly with increasing latitude from 48°N to 82°N, whereas diatom and fish diversity peaked around 70°N without a clear latitudinal decline. Macroinvertebrate diversity was significantly positively related to air temperature. Diatom diversity was related to bedrock geology and temperature, whereas fish diversity was related to glaciation history. Fish and macroinvertebrate assemblages differed between sites in western Canada, where invertebrate composition was more variable, and Alaska, where fish composition was more variable. In sites with both diatom and macroinvertebrate data, diatom composition was distinct in Alaska, where richness was highest in former glacial refugia. Macroinvertebrate composition was distinct in lowest‐latitude eastern and high‐latitude western Canadian sites where temperature was highest. Temperature, precipitation, geology, calcium, and substrate size were important environmental correlates for diatoms and macroinvertebrates, although the relative importance of each correlate differed. Diatom taxa were most strongly associated with water chemistry, whereas benthic invertebrate composition related most strongly to precipitation and temperature. This large‐scale study provides the most substantial integration and analysis of river diatom, macroinvertebrate, and fish data from the North American Arctic to date. Findings suggest that macroinvertebrates will show the strongest response to climate‐related shifts in temperature, whereas diatoms and fish are more likely to respond to climate‐induced shifts in nutrients and hydraulic connectivity. However, significant gaps in data coverage limited our ability to reliably evaluate spatial patterns and detect change. These gaps could be reduced by improving collaborative efforts between the U.S.A. and Canada to harmonise future monitoring.

Arctic↗

USGS2008

Are hotspots of evolutionary potential adequately protected in southern California?

Reserves are often designed to protect rare habitats, or "typical" exemplars of ecoregions and geomorphic provinces. This approach focuses on current patterns of organismal and ecosystem-level biodiversity, but typically ignores the evolutionary processes that control the gain and loss of biodiversity at these and other levels (e.g., genetic, ecological). In order to include evolutionary processes in conservation planning efforts, their spatial components must first be identified and mapped. We describe a GIS-based approach for explicitly mapping patterns of genetic divergence and diversity for multiple species (a "multi-species genetic landscape"). Using this approach, we analyzed mitochondrial DNA datasets from 21 vertebrate and invertebrate species in southern California to identify areas with common phylogeographic breaks and high intrapopulation diversity. The result is an evolutionary framework for southern California within which patterns of genetic diversity can be analyzed in the context of historical processes, future evolutionary potential and current reserve design. Our multi-species genetic landscapes pinpoint six hotspots where interpopulation genetic divergence is consistently high, five evolutionary hotspots within which genetic connectivity is high, and three hotspots where intrapopulation genetic diversity is high. These 14 hotspots can be grouped into eight geographic areas, of which five largely are unprotected at this time. The multi-species genetic landscape approach may provide an avenue to readily incorporate measures of evolutionary process into GIS-based systematic conservation assessment and land-use planning.

Biological Conservation↗

USGS1973

A review of benthic faunal surveys in San Francisco Bay

During the past 60 years, considerable effort has been expended in studies of the relations of the biotic community and physicochemical characteristics of San Francisco Bay water. In very recent years these studies have emphasized the relations between the 'state of health' of bottom-living invertebrates (the benthos) and the levels of pollutants in the bay. Benthic organisms, generally sessile, are unable to escape deleterious environmental changes, and they reflect these changes in alterations of normal species composition of assemblages and species abundance. Data that expands understanding of these relations in urbanized areas such as San Francisco Bay are critical. Because of the implications of such data in control of water quality, the U.S. Geological Survey undertook a review of the results and major conclusions of San Francisco Bay benthic surveys. The size and species composition of faunal assemblages are largely controlled by the salinity of the water, the texture of the bottom sediments, and locally by wastes discharged into the bay. Efforts to describe the structure and function of benthic communities of the bay and to quantify the effects of waste discharge on them have been hampered by inconsistent and often faulty sampling methodology and species identification. Studies made show a lack of information on the normal life processes of the organisms concerned. The diversity index (a mathematical expression of the number of kinds of organisms present at a location), commonly used to describe the 'health' of the benthic community, has been employed without regard for the need for standardizing methodology and species identifications or for understanding natural biological processes that affect such mathematical indices. There are few reliable quantitative data on the distribution of benthic organisms in San Francisco Bay with which future assessments of the 'health' of the benthic community might be compared. Methods for study of the benthos must be standardized, identifications of species verified by trained taxonomists, and new field and laboratory studies undertaken before we can expect to obtain an accurate description of the benthic fauna and its relations with the environment.

Circular↗

USGS2019

Eradication of two non-native cichlid fishes in Miami, Florida (USA)

The proliferation of non-native fishes in Florida is a serious problem, and new species continue to be introduced to the state. Fishes in the Family Cichlidae have been especially successful colonizers of south Florida freshwater habitats. Herein we report a multi-agency effort to eradicate two non-native cichlid fishes in Miami, Florida (Bay Snook Petenia splendida and Blue Mbuna Labeotropheus fuelleborni). These fishes were removed before they were observed in the extensive, interconnected canal system through which they may have been able to expand throughout south Florida and access protected areas such as Everglades National Park. The study site, Pinecrest Gardens, is important because it contains remnant coastal cypress-strand habitat in an increasingly urbanized landscape that historically provided refuge to native amphidromous fishes and invertebrates. The project took considerable time (3.5 years), and we detail in this report how it evolved from a focus on isolating the non-native fishes and reducing their population sizes to an eradication. Gardens’ staff hydrologically isolated their ponds from nearby waterbodies by plugging a culvert with a solid gate. That provided the interagency team with more time to remove the potential threats. Compromises were made between fish management strategies and the Gardens’ priorities. Hurricane impacts helped shift priorities to more aggressive fish-management strategies. Cooperation among several federal and state agencies, as well as the Gardens, was key to the project’s success. We hope this effort may serve as a model for removing non-native species before they spread into ecosystems where eradication is not practical.

Florida↗

USGS2003

Geomorphology and fish assemblages in a Piedmont river basin, U.S.A.

1. We investigated linkages between fishes and fluvial geomorphology in 31 wadeable streams in the Etowah River basin in northern Georgia, U.S.A. Streams were stratified into three catchment sizes of approximately 15, 50 and 100 km 2 , and fishes and geomorphology were sampled at the reach scale (i.e. 20–40 times stream width). 2. Non-metric multidimensional scaling (NMDS) identified 85% of the among-site variation in fish assemblage structure and identified strong patterns in species composition across sites. Assemblages shifted from domination by centrarchids, and other pool species that spawn in fine sediments and have generalised food preferences, to darter-cyprinid-redhorse sucker complexes that inhabit riffles and runs, feed primarily on invertebrates, and spawn on coarser stream beds. 3. Richness and density were correlated with basin area, a measure of stream size, but species composition was best predicted (i.e. | r | between 0.60–0.82) by reach-level geomorphic variables (stream slope, bed texture, bed mobility and tractive force) that were unrelated to stream size. Stream slope was the dominant factor controlling stream habitat. Low slope streams had smaller bed particles, more fines in riffles, lower tractive force and greater bed mobility compared with high slope streams. 4. Our results contrast with the ‘River Continuum Concept’ which argues that stream assemblages vary predictably along stream size gradients. Our findings support the ‘Process Domains Concept’, which argues that local-scale geomorphic processes determine the stream habitat and disturbance regimes that influence stream communities.

Georgia↗

USGS1975

A river-quality assessment of the upper White River, Indiana

This report attempts to interrelate the physical, chemical, biological, esthetic, and cultural aspects of the upper White River (above Centerton, Ind.) by assessing the mass of available data. Relatively few new data were collected. The White River can be subdivided into five distinct river-quality sections. Section 1, above Winchester, drains a rural area and is affected by agricultural land use, although the river quality generally is good. Section 2, between Winchester and Muncie, is affected by urbanization at Winchester and Muncie. The river quality generally is good, although stretches near the cities occasionally have problems. Section 3, Muncie to Anderson, is polluted by urban effluent. Section 4, Anderson to Indianapolis, is further polluted (particularly at Anderson), but the river tends to recover considerably at Indianapolis, and becomes relatively clean. Section 5, below Indianapolis, is polluted. The river continues to be polluted below the project boundary. The river is affected most severely in the Indianapolis area. For example, in October 1972 the nitrogen load increased from 5.45 tons per day (4.94 tonnes per day) above Indianapolis to 18.43 tons per day (16.72 tonnes per day) below the city. Ten micrograms per kilogram of DDD, 20 micrograms per kilogram of chlordane, and 20 micrograms per kilogram of polychlorinated biphenyls were extracted from the sediments in the White River below Indianapolis. The median coliform bacteria count below Indianapolis is 360,000 colonies per 100 millilitres of water. The only benthic invertebrates found in the White River below Indianapolis are pollution-tolerant species, and very few fish are found. Conditions are similar, but to a somewhat lesser degree, below Muncie.

Indiana↗

USGS2023

Global review reveals how disparate study motivations, analytical designs, and focal ions limit understanding of salinization effects on freshwater animals

Global salinization of freshwaters is adversely affecting biotic communities and ecosystem processes. We reviewed six decades (1960–2020) of literature published on animal responses to increased salinities across different taxonomic and ecological contexts and identified knowledge gaps. From 585 journal articles, we characterized 5924 responses of mollusks, crustaceans, zooplankton, non-arthropod invertebrates (NAI), insects, fishes, and amphibians to salinization. Insects and fishes were the most studied taxa; Na + and Cl − were the most studied ions − . Collectively, concentrations of the ions examined typically spanned five orders of magnitude. Species' invasiveness was a key motivation for studying mollusks, crustaceans, and fishes; threats of urbanization and road salts were key motivations for studying NAI, zooplankton, and amphibians. Laboratory studies were more common than field studies for most taxa. Focal life stages in laboratory studies varied widely but juveniles and adults were represented similarly in field studies. Studies of mollusks, NAI, and crustacean focused on adults; studies of zooplankton, insects, fishes, and amphibians focused on juveniles. Organismal- and population-level responses measuring solute uptake, internal chemistry, body condition, or ion concentrations predominated laboratory studies; population- and assemblage-level responses measuring abundance, spatial distribution, or assemblage composition predominated field studies. Negative responses to salinization predominated but positive and unimodal responses were apparent across all taxa and organizational levels. Key topics for further research include a) salinity responses by more taxa, b) responses to especially toxic ions (i.e., potassium, bicarbonate, sulfate, magnesium), c) mechanisms causing positive and unimodal responses, d) traits underpinning responses, e) effects transcending organizational levels, f) ion-specific response thresholds, and g) interactions between salinity and other stressors. Our review suggests inter-taxa variation in sensitivity to salinization reflects occurrence of certain biological traits, including gill-breathing, semi-permeable skin, multiple life stages, and limited mobility. We propose a traits-based framework to predict salinization sensitivity from shared traits. This evolutionary approach could inform management aimed at preventing or reducing adverse impacts of freshwater salinization.

Science of the Total Environment↗

USGS2007

Persistent near-bottom aggregations of mesopelagic animals along the North Carolina and Virginia continental slopes

Submersible observations during four missions over the North Carolina and Virginia continental slopes (184–900 m) documented the occurrence of large aggregations of mesopelagic fishes and macronektonic invertebrates near or on the bottom. Aggregated mesopelagics formed a layer up to tens of meters deep positioned from a few centimeters to 20 m, usually <10 m, above the substrate. Aggregations were numerically dominated by microvores, notably the myctophid fish Ceratoscopelus maderensis and the penaeid shrimp Sergestes arcticus . Consistently present but in relatively lower numbers, were mesopelagic predators, including the paralepidids Notolepis rissoi and Lestidium atlanticum , the eel Nemichthys scolopaceus , the stomiid fishes Chauliodus sloani and Stomias boa ferox , and squids Illex spp. Near-bottom aggregations do not appear to be an artifact due to attraction to the submersible. Based on submersible observations in three areas in 4 years spanning a decade, near-bottom aggregations of midwater organisms appear to be a geographically widespread and persistent phenomenon along the continental slope of the southeastern US Aggregations may exploit areas of enhanced food resources at the bottom.

North Carolina, Virginia↗

USGS2016

Potential utility of environmental DNA for early detection of Eurasian watermilfoil ( Myriophyllum spicatum )

Considering the harmful and irreversible consequences of many biological invasions, early detection of an invasive species is an important step toward protecting ecosystems (Sepulveda et al. 2012). Early detection increases the probability that suppression or eradication efforts will be successful because invasive populations are small and localized (Vander Zanden et al. 2010). However, most invasive species are not detected early because current tools have low detection probabilities when target species are rare and the sampling effort required to achieve acceptable detection capabilities with current tools is seldom tractable (Jerde et al. 2011). As a result, many invasive species go undetected until they are abundant and suppression efforts become costly. Novel DNA-based surveillance tools have recently revolutionized early detection abilities using environmental DNA (eDNA) present in the water (Darling and Mahon 2011, Bohmann et al. 2014). In brief, eDNA monitoring enables the identification of organisms from DNA present and collected in water samples. Aquatic and semiaquatic organisms release DNA contained in sloughed, damaged, or partially decomposed tissue and waste products into the water and molecular techniques allow this eDNA in the water column to be identified from simple and easy-tocollect water samples (Darling and Mahon 2011). Despite limited understanding of the production, persistence, and spread of DNA in water (Barnes et al. 2014), eDNA monitoring has been applied not only to invasive species (Jerde et al. 2011), but also to species that are rare, endangered, or highly elusive (Spear et al. 2014). However, most eDNA research and monitoring has focused on detection of invertebrates and vertebrates and less attentionhas been given to developing eDNA techniques for detecting aquatic invasive plants. Eurasian watermilfoil (EWM; Myriophyllum spicatum L.) is an invasive species for which improved early detection would be particularly helpful. Advanced EWM invasions have negative impacts on native biodiversity, recreational boating, fishing, and other types of aquatic tourism (e.g., Eiswerth et al. 2000). On a broader scale, EWM can also be harmful to man-made aquatic infrastructure, such as hydroelectric dams. If an EWM invasion can be detected in an early stage where eradication is still a possibility, many of these negative consequences can be limited or prevented altogether (e.g., Madsen et al. 2002). The purpose of this research was to develop and validate a traditional polymerase chain reaction (PCR) assay for the detection of pure and hybridized EWM DNA using both laboratory and field experiments. We performed a pilot experiment in outdoor tanks to determine the basic functionality and sensitivity of the assay. Following this initial test, we collected field samples from Michigan and Montana lakes with and without known EWM populations. Taken together, our findings suggest that eDNA techniques have potential to be a useful strategy for the early detection of EWM.

Journal of Aquatic Plant Management↗

USGS2002

Evaluation of the effects of turbulence on the behaviour of migratory fish

The fundamental influence of fluid dynamics on aquatic organisms is receiving increasing attention among aquatic ecologists. For example, the importance of turbulence to ocean plankton has long been a subject of investigation (Peters and Redondo 1997). More recently, studies have begun to emerge that explicitly consider the effects of shear and turbulence on freshwater invertebrates (Statzner et al. 1988; Hart et al. 1996) and fishes (Pavlov et al. 1994, 1995). Hydraulic shear stress and turbulence are interdependent natural hydraulic phenomena that are important to fish, and consequently it is important to develop an understanding of how fish sense, react to, and perhaps utilize these phenomena under normal river flows. The appropriate reaction to turbulence may promote movement of migratory fish (Coutant 1998) or prevent displacement of resident fish. It has been suggested that one of the adverse effects of flow regulation by hydroelectric projects is the reduction of normal turbulence, particularly in the headwaters of reservoirs, which can lead to disorientation and slowing of migration (Williams et al. 1996; Coutant et al. 1997; Coutant 1998). On the other hand, greatly elevated levels of shear and turbulence may be injurious to fish; injuries can range from removal of the mucous layer on the body surface to descaling to torn opercula, popped eyes, and decapitation (Neitzel et al. 2000a,b). Damaging levels of fluid stress, such turbulence, can occur in a variety of circumstances in both natural and man-made environments. This report discusses the effects of shear stress and turbulence on fish, with an emphasis on potentially damaging levels in man-made environments. It defines these phenomena, describes studies that have been conducted to understand their effects, and identifies gaps in our knowledge. In particular, this report reviews the available information on the levels of turbulence that can occur within hydroelectric power plants, and the associated biological effects. Furthermore, this report describes an experimental apparatus designed to test the effect of turbulence on fish, and defines its hydraulics. It gives the results of experiments in which three different fish species were exposed to representative levels of turbulence in the laboratory.

Bonneville Power Administration Report↗

USGS2022

Potential effects of energy development on environmental resources of the Williston Basin in Montana, North Dakota, and South Dakota—Species of conservation concern

The ecosystems of the Williston Basin provide direct and indirect benefits to society. These benefits include carbon sequestration, flood control, nutrient rich soils for agricultural productivity, and habitat for wildlife. This chapter’s main focus is on the effects of energy development on species that occupy the ecosystems in the Williston Basin. We compiled a list of documented species of conservation concern that are of most interest to Federal regulators and resource managers. Species of concern were either listed as endangered or threatened under the Endangered Species Act or listed by States as species of concern in Natural Heritage Program checklists or State Wildlife Action Plans. All told, we determined that 357 species of concern likely occupy the Williston Basin. These species represented seven different taxonomic groups: plants (native and nonnative), terrestrial invertebrates, birds, mammals, reptiles and amphibians, and fish and mussels. We reviewed the existing scientific information pertaining to potential effects of energy development on these taxonomic groups. Currently, little is known about the abundance and distribution of many of these species. But some information exists that may be useful in predicting the potential effects of energy development on certain taxonomic groups. Most of this information has been developed through scientific research focused on effects to mammal and bird populations. Effects to other taxonomic groups seems to be understudied. In general, it seems that disturbances and modifications associated with development have the potential to negatively affect a wide range of species; however, many studies produce uncertain results because they are not designed to compare populations before and after energy development takes place. Most of these studies also do not monitor resources over multiple years and thus cannot detect population trends. Likewise, there are few examples of landscape-scale assessments of the cumulative effects of energy development that could be used for species or habitat management purposes. We suggest that more research needs to be completed to measure potential effects to a broad range of species in multiple taxonomic groups. This may require also developing some understanding about the basic ecology of many of the species covered in this report. In concert with this more basic research, we also suggest that more comprehensive assessments of potential negative cumulative effects across the Williston Basin should be developed in an effort to guide more strategic management of biological resources.

Montana, North Dakota, South Dakota↗

USGS2017

Effects of the biopesticide Zequanox® on reproduction and early development of the fathead minnow ( Pimephales promelas )

The biopesticide, Zequanox®, is registered for dreissenid mussel control in open water systems in the United States. Previous toxicity trials with nontarget organisms, including several young-of-the-year fish species and invertebrates, demonstrated selectivity of Zequanox for dreissenid mussels, but data are lacking on the treatment-related effects on reproduction and early life stage development of fish. The present study evaluated the effects of Zequanox on spawning and early life stages of the fathead minnow, Pimephales promelas , after exposure to the maximum approved concentration [100 mg active ingredient (AI)/L] and exposure duration (8h) for open water application. The results showed no significant treatment-related effect of Zequanox on survival, condition, or cumulative egg production (21 d) in adult fathead minnow. Eggs (≤24 h old) exposed to Zequanox developed to the eyed-stage at a similar rate to that of untreated eggs. Additionally, Zequanox did not have a significant effect on survival and growth (90 d) of newly hatched larvae (≤24-h old). Zequanox may be an option for control of dreissenid mussels in localized open water habitats where concerns exist regarding reproduction and recruitment of cyprinids and related species.

Management of Biological Invasions↗

USGS2017

Octocoral diseases in a changing ocean

Octocorals (Cnidaria, Octocorallia) constitute a geographically widely distributed and common group of marine invertebrates commonly referred to as “soft-corals,” “sea fans,” “horny corals,” “sea feathers,” and “sea plumes.” They are found from shallow coastal habitats to mesophotic and abyssal depths. Octocorals are important members of most Atlantic-Caribbean, Indo-Pacific, and Mediterranean coastal and mesophotic reef communities; however, information about their susceptibility to diseases, predation, and competition, and their relationship with changing environmental conditions is limited. At least 19 diseases have been observed in at least 42 common octocoral species throughout their range. Twelve of these have been reported in the wider Caribbean (CA), one in Brazil (BR), two in the Mediterranean (ME), one in the Eastern Pacific (EP), and three in the western Pacific (WP). Pathogenic and/or environmental causes have been identified for eight diseases, including viruses, terrestrial fungi, protozoans, bacteria and cyanobacteria, filamentous algae, parasitic copepods, and high temperature. Only a few of the suspected pathogens have been tested with Koch’s postulates. At least eight disease outbreaks have led to extensive octocoral mortalities in the CA, ME, BR, and EP with detrimental ecological consequences. The fungal disease Aspergillosis has produced the highest mortalities in the CA and the EP. Other fungi, protozoans, and the bacterium Vibrio coralliilyticus were identified as potential causes of the death of millions of colonies in two Mediterranean disease outbreaks. Bacterial and fungal agents seemed to be responsible for the mass mortalities in Brazil and the WP. Most outbreaks in all regions were linked to high thermal anomalies associated with climate change, which seems to be the major driver. Other biological stressors such as predation and/or competition produce injuries that may contribute to the spread of infections and mortality. Overfishing of common predators could lead to population explosions of octocoral-feeding species that produced mass mortalities in some Caribbean localities. Our lack of knowledge of causes and pathogenesis of octocoral diseases parallels that of hard corals. New diseases are being described almost every year concomitant with increasing seawater temperatures. The ecological and economic consequences could be significant, with drastic changes in the seascape of shallow coral reefs and other coastal marine habitats and reduction of their ecological services. Given our limited knowledge, our best options for recovery of octocorals and coral reefs in general include sound management of coastal fisheries, development and tourism; reduction of land- and sea-based pollution; and abating effects of climate change.

Book chapter↗