Search USGS⌕ Search

SEARCH · Search USGS

Results for “Experimental Results”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 343 records · Page 19Linked to original sources
USGS2004

Surface complexation model of uranyl sorption on Georgia kaolinite

The adsorption of uranyl on standard Georgia kaolinites (KGa-1 and KGa-1B) was studied as a function of pH (3–10), total U (1 and 10 μmol/l), and mass loading of clay (4 and 40 g/l). The uptake of uranyl in air-equilibrated systems increased with pH and reached a maximum in the near-neutral pH range. At higher pH values, the sorption decreased due to the presence of aqueous uranyl carbonate complexes. One kaolinite sample was examined after the uranyl uptake experiments by transmission electron microscopy (TEM), using energy dispersive X-ray spectroscopy (EDS) to determine the U content. It was found that uraniumwas preferentially adsorbed by Ti-rich impurity phases (predominantly anatase), which are present in the kaolinite samples. Uranyl sorption on the Georgia kaolinites was simulated with U sorption reactions on both titanol and aluminol sites, using a simple non-electrostatic surface complexation model (SCM). The relative amounts of U-binding >TiOH and >AlOH sites were estimated from the TEM/EDS results. A ternary uranyl carbonate complex on the titanol site improved the fit to the experimental data in the higher pH range. The final model contained only three optimised log K values, and was able to simulate adsorption data across a wide range of experimental conditions. The >TiOH (anatase) sites appear to play an important role in retaining U at low uranyl concentrations. As kaolinite often contains trace TiO 2 , its presence may need to be taken into account when modelling the results of sorption experiments with radionuclides or trace metals on kaolinite.

Applied Clay Science↗
USGS1988

Application of the two-film model to the volatilization of acetone and t-butyl alcohol from water as a function of temperature

The two-film model is often used to describe the volatilization of organic substances from water. This model assumes uniformly mixed water and air phases separated by thin films of water and air in which mass transfer is by molecular diffusion. Mass-transfer coefficients for the films, commonly called film coefficients, are related through the Henry's law constant and the model equation to the overall mass-transfer coefficient for volatilization. The films are modeled as two resistances in series, resulting in additive resistances. The two-film model and the concept of additivity of resistances were applied to experimental data for acetone and t-butyl alcohol. Overall mass-transfer coefficients for the volatilization of acetone and t-butyl alcohol from water were measured in the laboratory in a stirred constant-temperature bath. Measurements were completed for six water temperatures, each at three water mixing conditions. Wind-speed was constant at about 0.1 meter per second for all experiments. Oxygen absorption coefficients were measured simultaneously with the measurement of the acetone and t-butyl alcohol mass-transfer coefficients. Gas-film coefficients for acetone, t-butyl alcohol, and water were determined by measuring the volatilization fluxes of the pure substances over a range of temperatures. Henry's law constants were estimated from data from the literature. The combination of high resistance in the gas film for solutes with low values of the Henry's law constants has not been studied previously. Calculation of the liquid-film coefficients for acetone and t-butyl alcohol from measured overall mass-transfer and gas-film coefficients, estimated Henry's law constants, and the two-film model equation resulted in physically unrealistic, negative liquid-film coefficients for most of the experiments at the medium and high water mixing conditions. An analysis of the two-film model equation showed that when the percentage resistance in the gas film is large and the gas-film resistance approaches the overall resistance in value, the calculated liquid-film coefficient becomes extremely sensitive to errors in the Henry's law constant. The negative coefficients were attributed to this sensitivity and to errors in the estimated Henry's law constants. Liquid-film coefficients for the absorption of oxygen were correlated with the stirrer Reynolds number and the Schmidt number. Application of this correlation with the experimental conditions and a molecular-diffusion coefficient adjustment resulted in values of the liquid-film coefficients for both acetone and t-butyl alcohol within the range expected for all three mixing conditions. Comparison of Henry's law constants calculated from these film coefficients and the experimental data with the constants calculated from literature data showed that the differences were small relative to the errors reported in the literature as typical for the measurement or estimation of Henry's law constants for hydrophilic compounds such as ketones and alcohols. Temperature dependence of the mass-transfer coefficients was expressed in two forms. The first, based on thermodynamics, assumed the coefficients varied as the exponential of the reciprocal absolute temperature. The second empirical approach assumed the coefficients varied as the exponential of the absolute temperature. Both of these forms predicted the temperature dependence of the experimental mass-transfer coefficients with little error for most of the water temperature range likely to be found in streams and rivers. Liquid-film and gas-film coefficients for acetone and t-butyl alcohol were similar in value. However, depending on water mixing conditions, overall mass-transfer coefficients for acetone were from two to four times larger than the coefficients for t-butyl alcohol. This difference in behavior of the coefficients resulted because the Henry's law constant for acetone was about three times larger than that of

Water Supply Paper↗
USGS2000

Development of a pore network simulation model to study nonaqueous phase liquid dissolution

A pore network simulation model was developed to investigate the fundamental physics of nonequilibrium nonaqueous phase liquid (NAPL) dissolution. The network model is a lattice of cubic chambers and rectangular tubes that represent pore bodies and pore throats, respectively. Experimental data obtained by Powers [1992] were used to develop and validate the model. To ensure the network model was representative of a real porous medium, the pore size distribution of the network was calibrated by matching simulated and experimental drainage and imbibition capillary pressure‐saturation curves. The predicted network residual styrene blob‐size distribution was nearly identical to the observed distribution. The network model reproduced the observed hydraulic conductivity and produced relative permeability curves that were representative of a poorly consolidated sand. Aqueous‐phase transport was represented by applying the equation for solute flux to the network tubes and solving for solute concentrations in the network chambers. Complete mixing was found to be an appropriate approximation for calculation of chamber concentrations. Mass transfer from NAPL blobs was represented using a corner diffusion model. Predicted results of solute concentration versus Peclet number and of modified Sherwood number versus Peclet number for the network model compare favorably with experimental data for the case in which NAPL blob dissolution was negligible. Predicted results of normalized effluent concentration versus pore volume for the network were similar to the experimental data for the case in which NAPL blob dissolution occurred with time.

Water Resources Research↗
USGS1994

Vulnerability to predation and physiological stress responses of experimentally descaled juvenile Chinook salmon, Oncorhynchus tshawytscha

Juvenile salmonids, Oncorhynchus spp., commonly encounter conditions (e.g., during hatchery release and dam passage) that result in damage to the skin, scale, and slime complex. We conducted laboratory experiments to determine if descaling of juvenile chinook salmon, O. tshawytscha , increased their vulnerability to predation, and to assess the physiological stress responses elicited by descaling. Salmon were experimentally descaled on either 10% or 20% of their total body area. When offered equal numbers of control and descaled juvenile chinook salmon, northern squawfish, Ptychocheilus oregonensis , did not consume significantly more of either prey type (48–60% of consumed prey were descaled). Juvenile chinook salmon descaled on 10% of their body area did show significant physiological stress responses, however. Mean concentrations of plasma cortisol peaked 1 h after descaling, and returned to control levels by 12 h. Plasma glucose peaked 3 h post-treatment and remained elevated for 24 h. Plasma lactate increased immediately following treatment and returned to undisturbed control levels by 3 h. The osmoregulatory response of plasma potassium was highly variable, but plasma sodium decreased immediately and remained low for 24 h. The observed physiological responses suggest that descaling of juvenile chinook salmon could result in decreased resistance to disease and other stressors encountered in the field, possibly leading to reduced performance capacity and lowered survival.

Environmental Biology of Fishes↗
USGS1988

Liquid-vapor relations in the critical region of the system NaCl-H 2 O from 380 to 415°C: A refined determination of the critical point and two-phase boundary of seawater

Pressure-temperature-composition ( P - T - x ) relations for coexisting vapor and liquid phases in the system NaCl-H 2 O were determined experimentally in the critical region from 380 to 415°C. The results provide much improved control on the P - T - x critical line in this region. The critical point of seawater (3.2 wt% NaCl solution), which is bracketed in the present study, is at 407°C and 298.5 bar. In addition, the P - T two-phase boundary of seawater was re-determined. These results provide increased precision and accuracy for theoretical models of critical phenomena in this important two-component system and of the limiting P - T conditions of seawater in seafloor geothermal systems.

Geochimica et Cosmochimica Acta↗
USGS2012

Overwintering tadpoles and loss of fitness correlates in Polypedates braueri tadpoles that use artificial pools in a lowland agroecosystem

We studied growth, development, and metamorphic traits of Polypedates braueri tadpoles in Taiwan to elucidate the cause of tadpole overwintering in man-made water containers in lowland orchards on the Bagua Terrace. Polypedates braueri bred from March to August, but tadpoles were present year round. Laboratory experiments demonstrated that tadpole overwintering was facultative; low temperatures and limited food retarded both growth and development, resulting in overwintering in the tadpole stage. Tadpoles at the lowest experimental temperature (15°C) never reached metamorphosis. A field experiment demonstrated that 78, 28, and 4% of tadpoles raised in high, medium, and low food regimes, respectively, metamorphosed before the onset of winter. Tadpoles that did not metamorphose by fall continued to grow slowly and either metamorphosed during the winter or the following spring. These findings indicate that food availability plays a key role in inducing overwintering in tadpoles. Jumping performance of metamorphs was positively correlated with food regimes, but body lipid content was significantly higher in metamorphs raised with either low or high food regimes than in those with medium levels of food. Overwintering by P. braueri tadpoles has not been previously reported; however, agricultural activities have created new breeding habitats (i.e., man-made bodies of water), some of which are sufficiently food-limited that tadpoles overwinter to complete development and metamorphosis. An understanding of the survivorship, life history traits, and physiology of these frogs is needed to shed light on how man-made breeding sites affect the population dynamics of native frog populations.

Herpetologica↗
USGS1981

Effects of lead shot ingestion on delta-aminolevulinic acid dehydratase activity, hemoglobin concentration, and serum chemistry in bald eagles

Lead shot ingestion by bald eagles ( Haliaeetus leucocephalus ) is considered to be widespread and has been implicated in the death of eagles in nature. It was recently demonstrated under experimental conditions that ingestion of as few as 10 lead shot resulted in death within 12 to 20 days. In the present study hematological responses to lead toxicity including red blood cell ALAD activity, hemoglobin concentration and 23 different blood serum chemistries were examined in five captive bald eagles that were unsuitable for rehabilitation and release. Eagles were dosed by force-feeding with 10 lead shot; they were redosed if regurgitation occurred. Red blood cell ALAD activity was inhibited by nearly 80% within 24 hours when mean blood lead concentration had increased to 0.8 parts per million (ppm). By the end of 1 week there was a significant decrease (20-25%) in hematocrit and hemoglobin, and the mean blood lead concentration was over 3 ppm. Within as little as 1-2 weeks after dosing, significant elevations in serum creatinine and serum alanine aminotransferase occurred, as well as a significant decrease in the ratio of serum aspartic aminotransferase to serum alanine aminotransferase. The mean blood lead concentration was over 5 ppm by the end of 2 weeks. These changes in serum chemistry may be indicative of kidney and liver alterations.

Journal of Wildlife Diseases↗
USGS1986

Heat capacities and thermodynamic functions for beryl, Be3Al2Si6O18, phenakite, Be2SiO4, euclase, BeAlSiO4(OH), bertrandite, Be4Si2O7(OH)2, and chrysoberyl, BeAl2O4.

The heat capacities of beryl, phenakite, euclase and bertrandite have been measured between approx 5 and 800 K by combined quasi-adiabatic cryogenic calorimetry and differential scanning calorimetry. The heat capacities of chrysoberyl have been measured from 340 to 800 K. The resulting data have been combined with solution and phase-equilibrium experimental data and simultaneously adjusted using the programme PHAS20 to provide an internally consistent set of thermodynamic properties for several important beryllium phases. The experimental heat capacities and tables of derived thermodynamic properties are presented.-J.A.Z.

American Mineralogist↗
USGS2003

Soil fertility in deserts: A review on the influence of biological soil crusts and the effect of soil surface disturbance on nutrient inputs and losses

Sources of desert soil fertility include parent material weathering, aeolian deposition, and on-site C and N biotic fixation. While parent materials provide many soil nutrients, aeolian deposition can provide up to 75% of plant-essential nutrients including N, P, K, Mg, Na, Mn, Cu, and Fe. Soil surface biota are often sticky, and help retain wind-deposited nutrients, as well as providing much of the N inputs. Carbon inputs are from both plants and soil surface biota. Most desert soils are protected by cyanobacterial-lichen-moss soil crusts, chemical crusts and/or desert pavement. Experimental disturbances applied in US deserts show disruption of soil surfaces result in decreased N and C inputs from soil biota by up to 100%. The ability to glue aeolian deposits in place is compromised, and underlying soils are exposed to erosion. The ability to withstand wind increases with biological and physical soil crust development. While most undisturbed sites show little sediment production, disturbance by vehicles or livestock produce up to 36 times more sediment production, with soil movement initiated at wind velocities well below commonly-occurring wind speeds. Soil fines and flora are often concentrated in the top 3 mm of the soil surface. Winds across disturbed areas can quickly remove this material from the soil surface, thereby potentially removing much of current and future soil fertility. Thus, disturbances of desert soil surfaces can both reduce fertility inputs and accelerate fertility losses.

Conference Paper↗
USGS2018

Holocene paleointensity of the Island of Hawai'i from glassy volcanics

This study presents new high‐quality paleointensity records and 14 C radiocarbon age determinations from the Island of Hawai `i during the Holocene. Previous studies on Hawai `i use experimental methods and statistical selection criteria that may produce inaccurate geomagnetic field strength estimates. Additional high‐quality paleointensity results can be used to evaluate the existing Hawaiian data set and investigate Holocene geomagnetic field behavior. New paleointensity sites from 22 lava flows were calculated using the IZZI‐Thellier laboratory technique and a strict set of selection criteria. Rapidly cooled, glassy volcanic material was collected for all sites. Isotopic age determinations range from 270 to >10, 000 years before present (nine new 14 C ages are also presented as part of this study). The median intensity for the 22 flows is 47.5 μ T, with a median absolute deviation uncertainty of 5.6 μ T; substantially greater than the present‐day field strength at Hawai `i (~36 μ T). These new results are comparable to previously published data from this location and are consistent with global paleointensity models. There is no evidence of an intensity “spike” at 3,000 years before present, as seen in the Levant and elsewhere. Previously published data vary in intensity by experimental technique relative to data using glassy material and strict selection criteria. Non‐Thellier‐type data are biased low, a result of these techniques estimating intensity from possibly nonsingle domain magnetic carriers. Thellier‐Thellier data are biased high, the reasons for which remain unclear as no cooling rate effect was demonstrated, and we were unable to reproduce the high bias with different selection criteria.

Hawai`i↗
USGS2018

Delayed herbivory by migratory geese increases summer‐long CO2 uptake in coastal western Alaska

The advancement of spring and the differential ability of organisms to respond to changes in plant phenology may lead to ‘phenological mismatches’ as a result of climate change. One potential for considerable mismatch is between migratory birds and food availability in northern breeding ranges and these mismatches may have consequences for ecosystem function. We conducted a three‐year experiment to examine the consequences for CO 2 exchange of advanced spring green‐up and altered timing of grazing by migratory Pacific black brant in a coastal wetland in western Alaska. Experimental treatments represent the variation in green‐up and timing of peak grazing intensity that currently exists in the system. Delayed grazing resulted in greater net ecosystem exchange (NEE) and gross primary productivity (GPP) while early grazing reduced CO 2 uptake with the potential of causing net ecosystem carbon (C) loss in late spring and early summer. Conversely, advancing the growing season only influenced ecosystem respiration (ER), resulting in a small increase in ER with no concomitant impact on GPP or NEE. The experimental treatment that represents the most likely future, with green‐up advancing more rapidly than arrival of migratory geese, results in NEE changing by 1.2 μmol m −2 s −1 toward a greater CO 2 sink in spring and summer. Increased sink strength, however, may be mitigated by early arrival of migratory geese, which would reduce CO 2 uptake. Importantly, while the direct effect of climate warming on phenology of green‐up has a minimal influence on NEE, the indirect effect of climate warming manifest through changes in the timing of peak grazing can have a significant impact on C balance in northern coastal wetlands. Furthermore, processes influencing the timing of goose migration in the winter range can significantly influence ecosystem function in summer habitats.

Alaska↗
USGS2012

Laboratory observations of fault strength in response to changes in normal stress

Changes in fault normal stress can either inhibit or promote rupture propagation, depending on the fault geometry and on how fault shear strength varies in response to the normal stress change. A better understanding of this dependence will lead to improved earthquake simulation techniques, and ultimately, improved earthquake hazard mitigation efforts. We present the results of new laboratory experiments investigating the effects of step changes in fault normal stress on the fault shear strength during sliding, using bare Westerly granite samples, with roughened sliding surfaces, in a double direct shear apparatus. Previous experimental studies examining the shear strength following a step change in the normal stress produce contradictory results: a set of double direct shear experiments indicates that the shear strength of a fault responds immediately, and then is followed by a prolonged slip-dependent response, while a set of shock loading experiments indicates that there is no immediate component, and the response is purely gradual and slip-dependent. In our new, high-resolution experiments, we observe that the acoustic transmissivity and dilatancy of simulated faults in our tests respond immediately to changes in the normal stress, consistent with the interpretations of previous investigations, and verify an immediate increase in the area of contact between the roughened sliding surfaces as normal stress increases. However, the shear strength of the fault does not immediately increase, indicating that the new area of contact between the rough fault surfaces does not appear preloaded with any shear resistance or strength. Additional slip is required for the fault to achieve a new shear strength appropriate for its new loading conditions, consistent with previous observations made during shock loading.

Journal of Applied Mechanics↗
USGS1997

The physics of debris flows

Recent advances in theory and experimentation motivate a thorough reassessment of the physics of debris flows. Analyses of flows of dry, granular solids and solid-fluid mixtures provide a foundation for a comprehensive debris flow theory, and experiments provide data that reveal the strengths and limitations of theoretical models. Both debris flow materials and dry granular materials can sustain shear stresses while remaining static; both can deform in a slow, tranquil mode characterized by enduring, frictional grain contacts; and both can flow in a more rapid, agitated mode characterized by brief, inelastic grain collisions. In debris flows, however, pore fluid that is highly viscous and nearly incompressible, composed of water with suspended silt and clay, can strongly mediate intergranular friction and collisions. Grain friction, grain collisions, and viscous fluid flow may transfer significant momentum simultaneously. Both the vibrational kinetic energy of solid grains (measured by a quantity termed the granular temperature) and the pressure of the intervening pore fluid facilitate motion of grains past one another, thereby enhancing debris flow mobility. Granular temperature arises from conversion of flow translational energy to grain vibrational energy, a process that depends on shear rates, grain properties, boundary conditions, and the ambient fluid viscosity and pressure. Pore fluid pressures that exceed static equilibrium pressures result from local or global debris contraction. Like larger, natural debris flows, experimental debris flows of ???10 m3 of poorly sorted, water-saturated sediment invariably move as an unsteady surge or series of surges. Measurements at the base of experimental flows show that coarse-grained surge fronts have little or no pore fluid pressure. In contrast, finer-grained, thoroughly saturated debris behind surge fronts is nearly liquefied by high pore pressure, which persists owing to the great compressibility and moderate permeability of the debris. Realistic models of debris flows therefore require equations that simulate inertial motion of surges in which high-resistance fronts dominated by solid forces impede the motion of low-resistance tails more strongly influenced by fluid forces. Furthermore, because debris flows characteristically originate as nearly rigid sediment masses, transform at least partly to liquefied flows, and then transform again to nearly rigid deposits, acceptable models must simulate an evolution of material behavior without invoking preternatural changes in material properties. A simple model that satisfies most of these criteria uses depth-averaged equations of motion patterned after those of the Savage-Hutter theory for gravity-driven flow of dry granular masses but generalized to include the effects of viscous pore fluid with varying pressure. These equations can describe a spectrum of debris flow behaviors intermediate between those of wet rock avalanches and sediment-laden water floods. With appropriate pore pressure distributions the equations yield numerical solutions that successfully predict unsteady, nonuniform motion of experimental debris flows.

Reviews of Geophysics↗
USGS2012

Importance of floodplain connectivity to fish populations in the Apalachicola River, Florida

Floodplain habitats provide critical spawning and rearing habitats for many large-river fishes. The paradigm that floodplains are essential habitats is often a key reason for restoring altered rivers to natural flow regimes. However, few studies have documented spatial and temporal utilization of floodplain habitats by adult fish of sport or commercial management interest or assessed obligatory access to floodplain habitats for species' persistence. In this study, we applied telemetry techniques to examine adult fish movements between floodplain and mainstem habitats, paired with intensive light trap sampling of larval fish in these same habitats, to assess the relationships between riverine flows and fish movement and spawning patterns in restored and unmodified floodplain distributaries of the Apalachicola River, Florida. Our intent is to inform resource managers on the relationships between the timing, magnitude and duration of flow events and fish spawning as part of river management actions. Our results demonstrate spawning by all study species in floodplain and mainstem river habitat types, apparent migratory movements of some species between these habitats, and distinct spawning events for each study species on the basis of fish movement patterns and light trap catches. Additionally, Micropterus spp., Lepomis spp. and, to a lesser degree, Minytrema melanops used floodplain channel habitat that was experimentally reconnected to the mainstem within a few weeks of completing the restoration. This result is of interest to managers assessing restoration activities to reconnect these habitats as part of riverine restoration programmes globally.

Florida↗
USGS2006

Imprint of oaks on nitrogen availability and δ 15 N in California grassland-savanna: A case of enhanced N inputs?

Woody vegetation is distributed patchily in many arid and semi-arid ecosystems, where it is often associated with elevated nitrogen (N) pools and availability in islands of fertility. We measured N availability and δ 15 N in paired blue-oak versus annual grass dominated patches to characterize the causes and consequences of spatial variation in N dynamics of grassland-savanna in Sequoia-Kings Canyon National Park. We found significantly greater surface soil N pools (0–20 cm) in oak patches compared to adjacent grass areas across a 700 m elevation gradient from foothills to the savanna-forest boundary. N accumulation under oaks was associated with a 0.6‰ depletion in soil δ 15 N relative to grass patches. Results from a simple δ 15 N mass balance simulation model, constrained by surface soil N and δ 15 N measured in the field, suggest that the development of islands of N fertility under oaks can be traced primarily to enhanced N inputs. Net N mineralization and percent nitrification in laboratory incubations were consistently higher under oaks across a range of experimental soil moisture regimes, suggesting a scenario whereby greater N inputs to oak patches result in net N accumulation and enhanced N cycling, with a potential for greater nitrate loss as well. N concentrations of three common herbaceous annual plants were nearly 50% greater under oak than in adjacent grass patches, with community composition shifted towards more N-demanding species under oaks. We find that oaks imprint distinct N-rich islands of fertility that foster local feedback between soil N cycling, plant N uptake, and herbaceous community composition. Such patch-scale differences in N inputs and plant–soil interactions increase biogeochemical heterogeneity in grassland-savanna ecosystems and may shape watershed-level responses to chronic N deposition.

California↗
USGS2023

Performance evaluation of a channel rehabilitation project on the Lower Missouri River and implications for the dispersal of larval pallid sturgeon

In the Lower Missouri River, extensive channel modifications have altered hydraulic and morphologic conditions and reduced the river's ecological integrity. One species that has been adversely affected by these changes is the pallid sturgeon ( Scaphirhynchus albus ). Mainstem dams on the Missouri River restrict the upstream migration of adults and limit the downstream dispersal of larvae. Channelization to facilitate commercial barge traffic has also simplified the river. The self-dredging navigation channel is a highly efficient conduit for transporting sand, which has resulted in diminished rearing habitat along the lower river. Recently, a series of experimental projects was implemented to reengineer selected bends of the Lower Missouri River with the goal of increasing the interception and retention of passively drifting age-0 sturgeon into habitats more conducive to rearing. Here, we evaluate the hydraulic performance of one of these rehabilitation projects to gain insight on the implications of these interventions for age-0 pallid sturgeon dispersal. We conducted a dye-trace experiment and complementary hydraulic and particle-tracking modeling to examine the spatial and temporal patterns of passive dispersal in and around the rehabilitated study reach. Results from both the dye-trace experiment and particle-tracking model highlight the presence of several interception pathways from the navigation channel into more suitable rearing habitat on channel margins. Moreover, our results indicate that residence times within the rearing habitat are increased in comparison to the main channel. Although we cannot provide biological evaluation at this time to assess whether the rehabilitated study bend intercepts passively drifting age-0 pallid sturgeon, our analysis shows that hydraulic conditions within the rehabilitated bend would favor interception and retention of passively drifting particles (or, presumably, larvae) from the navigation channel and into slower moving, shallow-water habitat. Moreover, our particle-tracking model provides a new capability to explore important biological transport processes across a range of flows, organisms, and river environments.

Lower Missouri River↗
USGS2010

Field detection of avian influenza virus in wild birds: evaluation of a portable rRT-PCR system and freeze-dried reagents

Wild birds have been implicated in the spread of highly pathogenic avian influenza (HPAIV) of the H5N1 subtype, prompting surveillance along migratory flyways. Sampling of wild birds is often conducted in remote regions, but results are often delayed because of limited local analytical capabilities, difficulties with sample transportation and permitting, or problems keeping samples cold in the field. In response to these challenges, the performance of a portable real-time, reverse transcriptase-polymerase chain reaction (rRT-PCR) unit (RAPID(Registered), Idaho Technologies, Salt Lake City, UT) that employed lyophilized reagents (Influenza A Target 1 Taqman; ASAY-ASY-0109, Idaho Technologies) was compared to virus isolation combined with real-time RT-PCR conducted in a laboratory. This study included both field and experimental-based sampling. Field samples were collected from migratory shorebirds captured in northern California, while experimental samples were prepared by spiking fecal material with an H6N2 AIV isolate. Results indicated that the portable rRT-PCR unit had equivalent specificity to virus isolation with no false positives, but sensitivity was compromised at low viral titers. Use of portable rRT-PCR with lyophilized reagents may expedite surveillance results, paving the way to a better understanding of wild bird involvement in HPAIV H5N1 transmission.

Journal of Virological Methods↗
USGS2022

Experimental inoculation trial to determine the effects of temperature and humidity on White-nose Syndrome in hibernating bats

Disease results from interactions among the host, pathogen, and environment. Inoculation trials can quantify interactions among these players and explain aspects of disease ecology to inform management in variable and dynamic natural environments. White-nose Syndrome, a disease caused by the fungal pathogen, Pseudogymnoascus destructans ( Pd ), has caused severe population declines of several bat species in North America. We conducted the first experimental infection trial on the tri-colored bat, Perimyotis subflavus , to test the effect of temperature and humidity on disease severity. We also tested the effects of temperature and humidity on fungal growth and persistence on substrates. Unexpectedly, only 37% (35/95) of bats experimentally inoculated with Pd at the start of the experiment showed any infection response or disease symptoms after 83 days of captive hibernation. There was no evidence that temperature or humidity influenced infection response. Temperature had a strong effect on fungal growth on media plates, but the influence of humidity was more variable and uncertain. Designing laboratory studies to maximize research outcomes would be beneficial given the high costs of such efforts and potential for unexpected outcomes. Understanding the influence of microclimates on host–pathogen interactions remains an important consideration for managing wildlife diseases, particularly in variable environments.

Scientific Reports↗