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At least 343 records · Page 19Linked to original sources

USGS2011

Habitat suitability of patch types: a case study of the Yosemite toad

Understanding patch variability is crucial in understanding the spatial population structure of wildlife species, especially for rare or threatened species. We used a well-tested maximum entropy species distribution model (Maxent) to map the Yosemite toad (Anaxyrus (= Bufo) canorus) in the Sierra Nevada mountains of California. Twenty-six environmental variables were included in the model representing climate, topography, land cover type, and disturbance factors (e.g., distances to agricultural lands, fire perimeters, and timber harvest areas) throughout the historic range of the toad. We then took a novel approach to the study of spatially structured populations by applying the species-environmental matching model separately for 49 consistently occupied sites of the Yosemite toad compared to 27 intermittently occupied sites. We found that the distribution of the entire population was highly predictable (AUC = 0.95±0.03 SD), and associated with low slopes, specific vegetation types (wet meadow, alpine-dwarf shrub, montane chaparral, red fir, and subalpine conifer), and warm temperatures. The consistently occupied sites were also associated with these same factors, and they were also highly predictable (AUC = 0.95±0.05 SD). However, the intermittently occupied sites were associated with distance to fire perimeter, a slightly different response to vegetation types, distance to timber harvests, and a much broader set of aspect classes (AUC = 0.90±0.11 SD). We conclude that many studies of species distributions may benefit by modeling spatially structured populations separately. Modeling and monitoring consistently-occupied sites may provide a realistic snapshot of current species-environment relationships, important climatic and topographic patterns associated with species persistence patterns, and an understanding of the plasticity of the species to respond to varying climate regimes across its range. Meanwhile, modeling and monitoring of widely dispersing individuals and intermittently occupied sites may uncover environmental thresholds and human-related threats to population persistence.

Frontiers of Earth Science↗

USGS2008

Estimating Water Fluxes Across the Sediment-Water Interface in the Lower Merced River, California

The lower Merced River Basin was chosen by the U.S. Geological Survey?s (USGS) National Water Quality Assessment Program (NAWQA) to be included in a national study on how hydrological processes and agricultural practices interact to affect the transport and fate of agricultural chemicals. As part of this effort, surface-water?ground-water (sw?gw) interactions were studied in an instrumented 100-m reach on the lower Merced River. This study focused on estimating vertical rates of exchange across the sediment?water interface by direct measurement using seepage meters and by using temperature as a tracer coupled with numerical modeling. Temperature loggers and pressure transducers were placed in monitoring wells within the streambed and in the river to continuously monitor temperature and hydraulic head every 15 minutes from March 2004 to October 2005. One-dimensional modeling of heat and water flow was used to interpret the temperature and head observations and deduce the sw?gw fluxes using the USGS numerical model, VS2DH, which simulates variably saturated water flow and solves the energy transport equation. Results of the modeling effort indicate that the Merced River at the study reach is generally a slightly gaining stream with small head differences (cm) between the surface water and ground water, with flow reversals occurring during high streamflow events. The average vertical flux across the sediment?water interface was 0.4?2.2 cm/day, and the range of hydraulic conductivities was 1?10 m/day. Seepage meters generally failed to provide accurate data in this high-energy system because of slow seepage rates and a moving streambed resulting in scour or burial of the seepage meters. Estimates of streambed hydraulic conductivity were also made using grain-size analysis and slug tests. Estimated hydraulic conductivity for the upstream transect determined using slug tests ranged from 40 to 250 m/day, whereas the downstream transect ranged from 10 to 100 m/day. The range in variability was a result of position along each transect. A relative percent difference was used to describe the variability in estimates of hydraulic conductivity by grain-size analysis and slug test. Variability in applied methods at the upstream transect ranged from 0 to 9 percent, whereas the downstream transect showed greater variability, with a range of 80 to 133 percent.

Scientific Investigations Report↗

USGS2019

Scenarios of climate adaptation potential on protected working lands from management of soils

Management of protected lands may enhance ecosystem services that conservation programs were designed to protect. Practices that build soil organic matter (SOM) on agricultural lands also increase soil water holding capacity, potentially reducing climatic water deficit (CWD), increasing actual evapotranspiration (AET) and increasing groundwater recharge (RCH). We developed nine spatially-explicit land use and conservation scenarios (2001 - 2100) in the LUCAS land use change model to address two questions for California working lands (cropland and rangeland): How does land use change limit opportunities to manage soils for hydrologic climate adaptation benefits? To what extent and where can soil management practices increase climate adaptation on protected working lands? Hydrologic benefits [∑(∆CWD, ∆AET, ∆RCH)] due to soil management were simulated in the Basin Characterization Model (a state-wide water balance model) for two Representative Concentration Pathway 8.5 climate models. LUCAS simulated land conversion and new conservation easements with potential for maximum hydrologic benefits. Climate drove differences in lost potential for water benefits due to urbanization (33.9 - 87.6 m3 x 106) in 2050. Conflict between development pressure and potential hydrologic benefits occurred most in Santa Clara County in the San Francisco Bay Area and Shasta County in Northern Sacramento Valley. Hydrologic benefits on easements were similar in magnitude to losses from development. Water savings from management of California Land Conservation (a.k.a. Williamson) Act contract lands were an order of magnitude greater, totaling over 460 m3 x106 annually in a drier climate by 2050. Few counties provide most benefits because of soil properties, climate and land area protected. The increase in hydrologic benefits varies by agricultural practice and adoption rate, land use type and configuration, and terms of conservation agreements. The effectiveness of programs designed to improve climate adaptation at county to state scales will likely increase by taking this variability into consideration.

California↗

USGS2011

Using Lagrangian sampling to study water quality during downstream transport in the San Luis Drain, California, USA

To investigate the mechanism for diel (24h) changes commonly observed at fixed sampling locations and how these diel changes relate to downstream transport in hypereutrophic surface waters, we studied a parcel of agricultural drainage water as it traveled for 84h in a concrete-lined channel having no additional water inputs or outputs. Algal fluorescence, dissolved oxygen, temperature, pH, conductivity, and turbidity were measured every 30min. Grab samples were collected every 2h for water quality analyses, including nutrients, suspended sediment, and chlorophyll/pheophytin. Strong diel patterns were observed for dissolved oxygen, pH, and temperature within the parcel of water. In contrast, algal pigments and nitrate did not exhibit diel patterns within the parcel of water, but did exhibit strong diel patterns for samples collected at a fixed sampling location. The diel patterns observed at fixed sampling locations for these constituents can be attributed to algal growth during the day and downstream transport (washout) of algae at night. Algal pigments showed a rapid daytime increase during the first 48h followed by a general decrease for the remainder of the study, possibly due to sedimentation and photobleaching. Algal growth (primarily diatoms) was apparent each day during the study, as measured by increasing dissolved oxygen concentrations, despite low phosphate concentrations (<0.01mgL-1).

California↗

USGS1986

Organochlorine chemical residues in bluegills and common carp from the irrigated San Joaquin Valley floor, California

Samples of bluegills ( Lepomis macrochirus ) and common carp ( Cyprinus carpio ) collected from the San Joaquin River and two tributaries (Merced River and Salt Slough) in California were analyzed for 21 organochlorine chemical residues by gas chromatography to determine if pesticide contamination was confined to downstream sites exposed to irrigated agriculture, or if nonirrigated upstream sites were also contaminated. Residues of p,p′ -DDE were detected in all samples of both species. Six other contaminants were also present in both species at one or more of the collection sites: chlordane ( cis -chlordane + trans -nonachlor); p,p′ -DDD; o,p′ -DDT; p,p′ -DDT; DCPA (dimethyl tetrachloroterephthalate); and dieldrin. Concentrations of most of these residues were generally higher in carp than in bluegills; residues of other compounds were found only in carp: α-BHC (α-benzenehexachloride), Aroclor ® 1260, and toxaphene. Concentrations of most organochlorines in fish increased from upstream to downstream. Water quality variables that are influenced by irrigation return flows ( e.g. , conductivity, turbidity, and total alkalinity) also increased from upstream to downstream and were significantly correlated ( P < 0.05) with organochlorine residue levels in the fish. In carp, concentrations of two residues-⌆DDT ( p,p′ -DDD + p,p′ -DDE + + p,p′ -DDT; 1.43 to 2.21 mg/kg wet weight) and toxaphene (3.12 mg/kg wet weight)-approached the highest levels reported by the National Pesticide Monitoring Program for fish from other intensively farmed watersheds of the United States in 1980 to 1981, and surpassed criteria for whole-body residue concentrations recomended by the National Academy of Sciences and National Academy of Engineers for the protection of piscivorous wildlife.

California↗

USGS2013

Evapotranspiration and water balance of an anthropogenic coastal desert wetland: responses to fire, inflows and salinities

Evapotranspiration (ET) and other water balance components were estimated for Cienega de Santa Clara, an anthropogenic brackish wetland in the delta of the Colorado River in Mexico. The marsh is in the Biosphere Reserve of the Upper Gulf of California and Delta of the Colorado River, and supports a high abundance and diversity of wildlife. Over 95% of its water supply originates as agricultural drain water from the USA, sent for disposal in Mexico. This study was conducted from 2009 to 2011, before, during and after a trial run of the Yuma Desalting Plant in the USA, which will divert water from the wetland and replace it with brine from the desalting operation. The goal was to estimate the main components in the water budget to be used in creating management scenarios for this marsh. We used a remote sensing algorithm to estimate ET from meteorological data and Enhanced Vegetation Index values from the Moderate Resolution Imaging Spectrometer (MODIS) sensors on the Terra satellite. ET estimates from the MODIS method were then compared to results from a mass balance of water and salt inflows and outflows over the study period. By both methods, mean annual ET estimates ranged from 2.6 to 3.0 mm d −1 , or 50 to 60% of reference ET (ET o ). Water entered at a mean salinity of 2.6 g L −1 TDS and mean salinity in the wetland was 3.73 g L −1 TDS over the 33 month study period. Over an annual cycle, 54% of inflows supported ET while the rest exited the marsh as outflows; however, in winter when ET was low, up to 90% of the inflows exited the marsh. An analysis of ET estimates over the years 2000–2011 showed that annual ET was proportional to the volume of inflows, but was also markedly stimulated by fires. Spring fires in 2006 and 2011 burned off accumulated thatch, resulting in vigorous growth of new leaves and a 30% increase in peak summer ET compared to non-fire years. Following fires, peak summer ET estimates were equal to ET o , while in non-fire years peak ET was equal to only one-half to two-thirds of ET o . Over annual cycles, estimated ET was always lower than ET o , because T. domingensis is dormant in winter and shades the water surface, reducing direct evaporation. Thus, ET of a Typha marsh is likely to be less than an open water surface under most conditions.

Ecological Engineering↗

USGS2021

California and Landsat

California has remarkable geographic diversity, from 1,100 miles of Pacific shoreline to 33 million acres of trees, including its famous redwood forests along the Pacific Coast Highway, U.S. Route 101. And although California’s nickname is “The Golden State," it may also deserve the title of “The Extreme State.” Mount Whitney, the highest peak in the conterminous United States, stands at 14,494 feet above sea level in the Sierra Nevada mountain range. Just 2.5 hours away by car, Death Valley’s Badwater Basin boasts the lowest point in the United States: 282 feet below sea level. Although hundreds of inches of snow fall on Mount Whitney each year, the rainfall in Death Valley, commonly called the hottest place on Earth, averages less than 2 inches. California is the most populous U.S. State with 39 million residents, 26 million of whom live near the coast. It’s also the most agriculturally productive State, raising a variety of fruits, vegetables, nuts, grains, grasses, and flowers in addition to dairy and livestock. Although climate change affects many of these people, production, and places, Landsat can help agencies and residents monitor their landscapes and plan for a resilient future.

California↗

USGS2002

Occurrence and transport of diazinon in the Sacramento River, California, and selected tributaries during three winter storms, January-February 2000

The organophosphate pesticide diazinon is applied as a dormant orchard spray in the Sacramento Valley, California, during the winter when the area receives a majority of its annual rainfall. Dormant spray pesticides, thus, have the potential to wash off the areas of application and migrate with storm runoff to streams in the Sacramento River Basin. Previous monitoring studies have shown that rain and associated runoff from winter storms plays an important role in the transport of diazinon from point of application to the Sacramento River and tributaries. Between January 30 and February 25, 2000, diazinon concentrations in the Sacramento River and selected tributaries were monitored on 5 consecutive days during each of three winter storms that moved through the Sacramento Valley after diazinon had been applied to orchards in the basin. Water samples were collected at 17 sites chosen to represent the effect of upstream land use at local and regional scales. Most samples were analyzed using an enzyme-linked immunosorbent assay (ELISA). Analysis by gas chromatography with electron capture detector and thermionic specific detector (GC/ECD/TSD) and gas chromatography with mass spectrometry (GC/MS) was done on split replicates from over 30 percent of the samples to confirm ELISA results and to provide lower analytical reporting limits at selected sites [30 ng/L (nanogram per liter) for ELISA, 20 ng/L for GC/ECD/TSD, and 2 ng/L for GC/MS]. Concentrations determined from ELISA analyses were consistently higher than concentrations for split samples analyzed by gas chromatography methods. Because of bias between diazinon concentrations using ELISA and gas chromatography methods, results from ELISA analyses were not compared to water-quality criteria. Load calculations using the ELISA analyses are similarly biased. Because the bias was consistent, however, the ELISA data is useful in site-to-site comparisons used to rank the relative levels and contributions of diazinon from individual subbasins in the watershed. Concentrations of diazinon in 138 samples analyzed by gas chromatography methods ranged from below detection (2 ng/L) to 2,890 ng/L with a median of 44 ng/L. Thirty percent of the samples had concentrations greater than 80 ng/L, which is considered by California as the criterion maximum concentration for the protection of aquatic habitat. Concentrations were highest in small tributaries and canals draining subbasins with predominantly agricultural land use and in a channel draining the Yuba City urban area. Load estimates using concentrations derived from GC/MS analyses indicate that about 30 percent of the diazinon in the lower Sacramento River is from the Feather River Basin. Loads estimated using ELISA analyses show a similar, but slightly higher fraction of the total load coming from that basin. The source of over half the total load measured at Sacramento River at Alamar appears to have originated in the part of the drainage basin upstream of the city of Colusa. Of the diazinon reported applied to agricultural land in Sacramento Valley (about 42,500 pounds active ingredient) just before and during the monitoring period, about 0.4 percent appeared to be transported to the lower Sacramento River during the period of monitoring. A similar percent of applied diazinon was estimated to have entered the Feather River from upstream sources. Diazinon use in the study area during the 1999-2000 dormant spray season was unusually low, about 60 percent of the average of the previous 4 years. Therefore, diazinon loadings may be higher in subsequent years, should use increase and pesticide management practices remain the same. Although diazinon was the most frequently detected pesticide and the pesticide detected at the highest concentrations, 10 other pesticides were detected in the samples collected. These included the insecticides methidathion and chlorpyrifos, and the herbicides simazine, molinate and thiobencarb.

California↗

USGS1999

Generalized water-table and water-level data at the US Air Force plant 42 and vicinity, Palmdale, California, March-April, 1997

The U.S. Air Force Plant 42 (Plant 42) which is in the Antelope Valley about 1.5 miles northeast of Palmdale and 3 miles southeast of Lancaster in Los Angeles County. Historically, ground water has been the primary source of water owing, in large part, to the scarcity of surface water in the region. Since 1972, supplemental surface water has been imported from the California Water Project to help meet the demand for water. Despite the importation of surface water, ground-water withdrawal for both municipal and agricultural uses is affecting ground-water levels in the vicinity of Plant 42. To better understand the effects of ground-water withdrawal on ground-water levels and movement in the area, the U.S. Geological Survey (USGS), in cooperation with the U.S. Air Force, constructed a generalized water-table-contour map of the aquifer system underlying Plant 42 and the surrounding area.

Water-Resources Investigations Report↗

USGS2012

Occurrence of pesticides in water and sediment collected from amphibian habitats located throughout the United States, 2009-10

Water and bed-sediment samples were collected by the U.S. Geological Survey (USGS) in 2009 and 2010 from 11 sites within California and 18 sites total in Colorado, Georgia, Idaho, Louisiana, Maine, and Oregon, and were analyzed for a suite of pesticides by the USGS. Water samples and bed-sediment samples were collected from perennial or seasonal ponds located in amphibian habitats in conjunction with research conducted by the USGS Amphibian Research and Monitoring Initiative and the USGS Toxic Substances Hydrology Program. Sites selected for this study in three of the states (California, Colorado, and Orgeon) have no direct pesticide application and are considered undeveloped and remote. Sites selected in Georgia, Idaho, Louisiana, and Maine were in close proximity to either agricultural or suburban areas. Water and sediment samples were collected once in 2009 during amphibian breeding seasons. In 2010, water samples were collected twice. The first sampling event coincided with the beginning of the frog breeding season for the species of interest, and the second event occurred 10-12 weeks later when pesticides were being applied to the surrounding areas. Additionally, water was collected during each sampling event to measure dissolved organic carbon, nutrients, and the fungus, Batrachochytrium dendrobatidis , which has been linked to amphibian declines worldwide. Bed-sediment samples were collected once during the beginning of the frog breeding season, when the amphibians are thought to be most at risk to pesticides. Results of this study are reported for the following two geographic scales: (1) for a national scale, by using data from the 29 sites that were sampled from seven states, and (2) for California, by using data from the 11 sampled sites in that state. Water samples were analyzed for 96 pesticides by using gas chromatography/mass spectrometry. A total of 24 pesticides were detected in one or more of the 54 water samples, including 7 fungicides, 10 herbicides, 4 insecticides, 1 synergist, and 2 pesticide degradates. On a national scale, aminomethylphosphonic acid (AMPA), the primary degradate of the herbicide glyphosate, which is the active ingredient in Roundup®, was the most frequently detected pesticide in water (16 of 54 samples) followed by glyphosate (8 of 54 samples). The maximum number of pesticides observed at a single site was nine compounds in a water sample from a site in Louisiana. The maximum concentration of a pesticide or degradate observed in water was 2,880 nanograms per liter of clomazone (a herbicide) at a site in Louisiana. In California, a total of eight pesticides were detected among all of the low and high elevation sites; AMPA was the most frequently detected pesticide, but glyphosate was detected at the highest concentrations (1.1 micrograms per liter). Bed-sediment samples were analyzed for 94 pesticides by using accelerated solvent extraction, gel permeation chromatography for sulfur removal, and carbon/alumina stacked solid-phase extraction cartridges to remove interfering sediment matrices. In bed sediment, 22 pesticides were detected in one or more of the samples, including 9 fungicides, 3 pyrethroid insecticides, p,p' -dichlorodiphenyltrichloroethane ( p,p' -DDT) and its major degradates, as well as several herbicides. Pyraclostrobin, a strobilurin fungicide, and bifenthrin, a pyrethroid insecticide, were detected most frequently. Maximum pesticide concentrations ranged from less than their respective method detection limits to 1,380 micrograms per kilogram (tebuconazole in California). The number of pesticides detected in samples from each site ranged from zero to six compounds. The sites with the greatest number of pesticides were in Maine and Oregon with six pesticides detected in one sample from each state, followed by Georgia with four pesticides in one sample. For California, a total of 10 pesticides were detected among all sites, and 4 pesticides were detected at both low and high elevation sites; tebuconazole and pyraclostrobin were the two most frequently detected pesticides in California. For the other six selected states, the most frequently detected pesticides in bed sediment were pyraclostrobin (detected in 17 of 42 samples), bifenthrin (detected in 14 of 42 samples), and tebuconazole (detected in 10 of 42 samples). The fungus, Batrachochytrium dendrobatidis (Bd), was detected in water samples in sites from four of the seven states during 2009 and 2010, and the number of zoospore equivalents per liter of water in samples where Bd was detected ranged from 1.6 to 343. Bd was not detected in water samples from sites in Georgia, Louisiana, and Oregon.

Data Series↗

USGS2025

Preserving and increasing water resources—Natural infrastructure in dryland streams in Baja California Sur, Mexico

The Los Planes watershed of Baja California Sur, Mexico, and its underlying aquifer are experiencing groundwater decline owing to low average annual rainfall (28.1 centimeters per year) and rising water demand from population growth and agricultural activities. This decline in water availability can lead to desertification—a process that changes arable land to desert by degrading soil and vegetation—and can pose serious challenges to livelihoods that depend on the land. To address these issues, a ranch in the Los Planes watershed has installed many natural infrastructures in dryland streams (NIDS) in channels for soil and water conservation. In 2022, the U.S. Geological Survey (USGS) began working with regional researchers and land managers to investigate the effects of NIDS on natural biological, geochemical, and physical processes and determine the efficacy of NIDS for water augmentation in the Los Planes watershed. The USGS also worked with local academic institutions and nonprofit organizations to create public educational opportunities focused on the area’s hydrogeology. These and other collaborative efforts with the U.S. Water Partnership and Innovaciones Alumbra aim at enhancing water resources in the Baja California Sur region and promoting water security and safeguarding community well-being. Resume La cuenca de Los Planes, ubicada en Baja California Sur, México, y su acuífero subyacente, están sufriendo una disminución de las aguas subterráneas debido a la baja precipitación media anual (28.1 centímetros por año) y la alta demanda de agua por parte de una población creciente y la actividad agrícola. Esta disminución de la disponibilidad de agua puede conducir a la desertificación—un proceso que por medio de la degradación del suelo y la vegetación convierte a la tierra cultivable en desierto—representando un serio desafío para los medios de vida de las personas. Para abordar estos problemas, un rancho en la cuenca de Los Planes ha instalado numerosas obras de Infraestructura Natural en Arroyos de Tierras Áridas (INATS) para conservación del suelo y del agua. En 2022, el Servicio Geológico de los Estados Unidos (USGS, por sus siglas en inglés) comenzó a trabajar con investigadores regionales y gestores de tierras para estudiar los efectos de INATS en los procesos biológicos, geoquímicos y físicos, y determinar su eficacia en el aumento de los recursos hídricos en la cuenca de Los Planes. El USGS se ha asociado con instituciones académicas y organizaciones locales sin fines de lucro para crear oportunidades educativas públicas centradas en la hidrogeología de la zona. Estos y otros esfuerzos colaborativos con la Asociación del Agua de Estados Unidos (U.S. Water Partnership) e Innovaciones Alumbra, tienen como objetivo mejorar el uso de los recursos hídricos en la región de Baja California Sur, promover la seguridad hídrica y proteger el bienestar de la comunidad.

Baja California Sur↗

USGS1979

Chemical quality of ground water in the eastern Sacramento Valley, California

The study area is about 1,300 square miles in the eastern Sacramento Valley, Calif., extending from the latitude of Roseville on the south to thelatitude of Chico on the north. Considering the increased agricultural development of the area, this report documents the chemical character of the ground water prior to water-level declines that could result from extensive pumping for irrigation or to changes caused by extensive use of imported surface water. Chemical analyses of samples from 222 wells show that most of the area is underlain by ground water of a quality suitable for most agricultural and domestic purposes. Ninety-five percent of the water sampled has dissolved-solids concentrations of less than 700 milligrams per liter. The general water type for the area is a calcium and magnesium bicarbonate water and there are negligible amounts of toxic trace elements. The potential for water-quality problems exists in the area south of Yuba City along the west bank of the Feather River. There, concentrations of chloride, sulfate, and dissolved solids are higher than in other parts of the area, and they could limit future agricultural activities if chloride- and sulfate-sensitive crops are grown. (Woodard-USGS)

California↗

USGS2004

Nitrate sources and sinks in Elkhorn Slough, California: Results from long-term continuous in situ nitrate analyzers

Nitrate and water quality parameters (temperature, salinity, dissolved oxygen, turbidity, and depth) were measured continuously with in situ NO 3 analyzers and water quality sondes at two sites in Elkhorn Slough in Central California. The Main Channel site near the mouth of Elkhorn Slough was sampled from February to September 2001. Azevedo Pond, a shallow tidal pond bordering agricultural fields further inland, was sampled from December 1999 to July 2001. Nitrate concentrations were recorded hourly while salinity, temperature, depth, oxygen, and turbidity were recorded every 30 min. Nitrate concentrations at the Main Channel site ranged from 5 to 65 μM. The propagation of an internal wave carrying water from ≈100 m depth up the Monterey Submarine Canyon and into the lower section of Elkhorn Slough on every rising tide was a major source of nitrate, accounting for 80–90% of the nitrogen load during the dry summer period. Nitrate concentrations in Azevedo Pond ranged from 0–20 μM during the dry summer months. Nitrate in Azevedo Pond increased to over 450 μM during a heavy winter precipitation event, and interannual variability driven by differences in precipitation was observed. At both sites, tidal cycling was the dominant forcing, often changing nitrate concentrations by 5-fold or more within a few hours. Water volume flux estimates were combined with observed nitrate concentrations to obtain nitrate fluxes. Nitrate flux calculations indicated a loss of 4 mmol NO 3 m −2 d −1 for the entire Elkhorn Slough and 1 mmol NO 3 m −2 d −1 at Azevedo Pond. These results suggested that the waters of Elkhorn Slough were not a major source of nitrate to Monterey Bay but actually a nitrate sink during the dry season. The limited winter data at the Main Channel site suggest that nitrate was exported from Elkhorn Slough during the wet season. Export of ammonium or dissolved organic nitrogen, which we did not monitor, may balance some or all of the NO 3 flux.

California↗

USGS2007

Effects of flow diversions on water and habitat quality: Examples from California's highly manipulated Sacramento–San Joaquin Delta

We use selected monitoring data to illustrate how localized water diversions from seasonal barriers, gate operations, and export pumps alter water quality across the Sacramento-San Joaquin Delta (California). Dynamics of water-quality variability are complex because the Delta is a mixing zone of water from the Sacramento and San Joaquin Rivers, agricultural return water, and the San Francisco Estuary. Each source has distinct water-quality characteristics, and the contribution of each source varies in response to natural hydrologic variability and water diversions. We use simulations with a tidal hydrodynamic model to reveal how three diversion events, as case studies, influence water quality through their alteration of Delta-wide water circulation patterns and flushing time. Reduction of export pumping decreases the proportion of Sacramento- to San Joaquin-derived fresh water in the central Delta, leading to rapid increases in salinity. Delta Cross Channel gate operations control salinity in the western Delta and alter the freshwater source distribution in the central Delta. Removal of the head of Old River barrier, in autumn, increases the flushing time of the Stockton Ship Channel from days to weeks, contributing to a depletion of dissolved oxygen. Each shift in water quality has implications either for habitat quality or municipal drinking water, illustrating the importance of a systems view to anticipate the suite of changes induced by flow manipulations, and to minimize the conflicts inherent in allocations of scarce resources to meet multiple objectives.

California↗

USGS2018

Measurements of erosion potential using Gust chamber in Yolo Bypass near Sacramento, California

This report describes work performed to quantify the erodibility of surface soils in the Yolo Bypass (Bypass) near Sacramento, California, for use in the California Department of Water Resources (DWR) Yolo Bypass D-MCM mercury model. The Bypass, when not serving as a floodway, is heavily utilized for agriculture. During flood events, surface water flows over the soil, resulting in the application of a shear stress to the soil. The shear stress is a function of flow speed and is often assumed to vary as the square of flow speed. Once the shear stress reaches a critical value, erosion commences, and the erosion rate typically increases with applied shear stress. The goal of the work described here was to quantify this process and how it varies throughout the major land uses found in the Yolo Bypass. Each of the major land uses found in the Bypass was targeted for sediment coring and two side-by-side cores, 10 centimeters in diameter, were extracted at each site for testing in a Gust erosion chamber. This device consists of a cylinder with a piston and cap installed to contain a sediment sample and overlying water. In most instances, coring was done with the cylinder, the piston and cap were installed, and testing commenced immediately. The cap at the top of the cylinder contains vanes to induce rotation of the flow and is driven by an electric motor, simulating the bed shear stress experienced by the soil in a flood event. Ambient water is introduced to the cylinder, passes through the device, and carries eroded sediment out of the chamber. The exiting water is tested for turbidity, and water samples obtained to relate turbidity to suspended sediment concentration are used to compute erosion rates for each of the applied shear stresses. The result for each sediment core is (1) definition of the critical shear stress required to initiate sediment erosion and (2) estimation of coefficients required to relate erosion rate to applied shear stress once this critical shear-stress threshold has been exceeded. These quantities were computed for each of the sites sampled. In total, 10 locations were sampled, representing 10 land uses ranging from wild and white rice fields to the flooded Liberty Island and the Toe Drain that receives runoff from much of the cultivated land (table 1). The Gust chamber test causes the erosion of a very small layer of sediment, typically less than a millimeter thick. The strength of the soil within this layer increases with depth, typically, and this soil strength versus depth is measured in the testing process. Results for each land use type tested are presented as the initial critical shear stress at which erosion began and the rate at which erosion increases as shear stress increases (table 2). Of the land use types sampled, irrigated pasture displayed the lowest critical shear stress, meaning that it required the smallest flow speed to initiate erosion. But in this case, the rate of increase of the subsequent erosion, given higher flow speeds, was small. The wild rice field samples exhibited a higher critical shear stress but also exhibited a much higher erosion rate once the critical shear stress was exceeded. The erosion rate for wild rice was about three times greater than that for white rice. Bear in mind that these results are based on only two cores tested per site, and variability between fields with the same crop could be significant. Approved digital data can be viewed and downloaded from ScienceBase, at https://doi.org/10.5066/F7BV7DQC . These results are being used to calculate erosion rates in the DWR Yolo Bypass D-MCM mercury model. The Toe Drain was very difficult to sample, owing to hard, consolidated sediments on the channel bed. On the first visit, two cores were obtained successfully, and testing revealed very different results. A second visit was made, but it was not possible to obtain cores suitable for testing with the coring equipment used. The available results suggest that Toe Drain soil is highly erodible (low critical shear stress and high erosion rate once initiated) despite being difficult to sample. As a collector of runoff, it also has the potential to accumulate soils eroded from adjacent areas, subsequent to storm events, as flows subside. This deposited material will typically be more erodible than the material that it lands on. The deposition and resuspension of material was not simulated in the testing described here because the applied shear stress increases monotonically during testing. The spatial distribution of mean grain size, loss on ignition, and percent fines of Yolo Bypass soils are also presented. Sediment sampling for this effort was performed by DWR; the U.S. Geological Survey (USGS) performed the sample analysis. These data should thus be considered provisional, but the remainder of the data presented here, and this report, have been through the formal U.S. Geological Survey review process. A separate effort has been made by others to develop numerical model results defining the spatially varying, time-dependent hydrodynamics in the Yolo Bypass. These model results are being used to quantify shear stress on the soil surface, which together with the Gust chamber results shown here, are used for the DWR Yolo Bypass D-MCM mercury transport model to compute erosion rates for each time step.

California↗

USGS2018

Findings from a preliminary investigation of the effects of aquatic habitat (water) availability on giant gartersnake (Thamnophis gigas) demography in the Sacramento Valley, California, 2014–17

The giant gartersnake ( Thamnophis gigas ) is a semi-aquatic species of snake precinctive to the Central Valley of California. Because the Central Valley has experienced a substantial loss of wetland habitat, giant gartersnake populations are largely found in aquatic habitats associated with rice agriculture. In dry years, less water may be available for rice agriculture, resulting in less aquatic habitat, which could have cascading effects on giant gartersnake populations. We present 2 years of data intended to examine how the demography of giant gartersnakes is affected by the availability of aquatic habitat on the landscape (2016–17), along with 2 years of (sparse) preliminary data (2014–15) collected as part of an earlier radio-telemetry study on giant gartersnake movement behavior. We sampled agricultural canals near rice fields for giant gartersnakes at 8 sites distributed throughout the Sacramento Valley. Five sites were sampled from 2014–17, and 3 sites were sampled from 2015–17. In total, we made 2,995 captures of 1,011 snakes from 2014–17. We used these capture data to fit a multi-site Jolly-Seber model to estimate the abundance of giant gartersnakes as well as the daily and annual probability of capture at each site. We used remotely sensed Landsat data to characterize the extent of flooded rice fields surrounding each site in each year. In addition, we collected 175 females from 2014–17 and delivered them to the Sacramento Zoo for health assessments and reproductive exams. The abundance of giant gartersnakes varied among sites, and abundance estimates were more precise in 2016 and 2017 when sampling effort was greatest. The probability of a giant gartersnake being captured at least once in a year was higher in 2016 and 2017 than 2014 and 2015, and recaptures of snakes marked the previous year were highest in 2016 and 2017 as well. Mean annual apparent survival was estimated to be 0.40 but varied among sites from a low of 0.14 to a high of 0.63. Five sites had diverse size distributions that included abundant sub-adult and large adult female snakes. One site had a truncated size distribution with few large adult female snakes, and 2 sites had mostly large adult-sized snakes and few small individuals. Both the probability a female was gravid and a female’s litter size were positively related to the female’s snout-vent length. Somatic growth rates varied more among years than among sites, and females grew faster (in millimeters per day) than male snakes. The proportion of the landscape around each site under active rice cultivation fluctuated over time (generally between 60–90 percent of the landscape was active rice growing, although this proportion was lower for some sites in some years), and variation in rice growing was asynchronous among sites. This study demonstrates that intensive demographic sampling enables estimation of several key demographic variables at each study site. Continued sampling would allow for investigating potential relationships between the amount of rice growing at a site and demographic parameters such as growth, survival, and reproduction.

California↗

USGS2022

Functional wetland loss drives emerging risks to waterbird migration networks

Migratory waterbirds (i.e., shorebirds, wading birds, and waterfowl) rely on a diffuse continental network of wetland habitats to support annual life cycle needs. Emerging threats of climate and land-use change raise new concerns over the sustainability of these habitat networks as water scarcity triggers cascading ecological effects impacting wetland habitat availability. Here we use important waterbird regions in Oregon and California, United States, as a model system to examine patterns of landscape change impacting wetland habitat networks in western North America. Wetland hydrology and flooded agricultural habitats were monitored monthly from 1988 to 2020 using satellite imagery to quantify the timing and duration of inundation—a key delimiter of habitat niche values associated with waterbird use. Trends were binned by management practice and wetland hydroperiods (semi-permanent, seasonal, and temporary) to identify differences in their climate and land-use change sensitivity. Wetland results were assessed using 33 waterbird species to detect non-linear effects of network change across a diversity of life cycle and habitat needs. Pervasive loss of semi-permanent wetlands was an indicator of systemic functional decline. Shortened hydroperiods caused by excessive drying transitioned semi-permanent wetlands to seasonal and temporary hydrologies—a process that in part counterbalanced concurrent seasonal and temporary wetland losses. Expansion of seasonal and temporary wetlands associated with closed-basin lakes offset wetland declines on other public and private lands, including wildlife refuges. Diving ducks, black terns, and grebes exhibited the most significant risk of habitat decline due to semi-permanent wetland loss that overlapped important migration, breeding, molting, and wintering periods. Shorebirds and dabbling ducks were beneficiaries of stable agricultural practices and top-down processes of functional wetland declines that operated collectively to maintain habitat needs. Outcomes from this work provide a novel perspective of wetland ecosystem change affecting waterbirds and their migration networks. Understanding the complexity of these relationships will become increasingly important as water scarcity continues to restructure the timing and availability of wetland resources.

California, Nevada, Oregon↗

USGS2008

Limited occurrence of denitrification in four shallow aquifers in agricultural areas of the United States

The ability of natural attenuation to mitigate agricultural nitrate contamination in recharging aquifers was investigated in four important agricultural settings in the United States. The study used laboratory analyses, field measurements, and flow and transport modeling for monitoring well transects (0.5 to 2.5 km in length) in the San Joaquin watershed, California, the Elkhorn watershed, Nebraska, the Yakima watershed, Washington, and the Chester watershed, Maryland. Ground water analyses included major ion chemistry, dissolved gases, nitrogen and oxygen stable isotopes, and estimates of recharge date. Sediment analyses included potential electron donors and stable nitrogen and carbon isotopes. Within each site and among aquifer-based medians, dissolved oxygen decreases with ground water age, and excess N 2 from denitrification increases with age. Stable isotopes and excess N 2 imply minimal denitrifying activity at the Maryland and Washington sites, partial denitrification at the California site, and total denitrification across portions of the Nebraska site. At all sites, recharging electron donor concentrations are not sufficient to account for the losses of dissolved oxygen and nitrate, implying that relict, solid phase electron donors drive redox reactions. Zero-order rates of denitrification range from 0 to 0.14 μmol N L −1 d −1 , comparable to observations of other studies using the same methods. Many values reported in the literature are, however, orders of magnitude higher, which is attributed to a combination of method limitations and bias for selection of sites with rapid denitrification. In the shallow aquifers below these agricultural fields, denitrification is limited in extent and will require residence times of decades or longer to mitigate modern nitrate contamination.

Journal of Environmental Quality↗