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Knowledge gaps and opportunities in water-quality drivers of aquatic ecosystem health

This report identifies key scientific gaps that limit our ability to predict water quality effects on health of aquatic ecosystems and proposes approaches to address those gaps. Topics considered include (1) coupled nutrient-carbon cycle processes and related ecological-flow-regime drivers of ecosystem health, (2) anthropogenic and geogenic toxin bioexposure, (3) fine sediment drivers of aquatic ecosystem health, and (4) freshwater salinization. Each topic is addressed in terms of scientific gaps, approaches, and timelines to help guide portions of the U.S. Geological Survey Water Mission Area ( https://www.usgs.gov/mission-areas/water-resources ) research portfolio and other national research efforts. The report provides an assessment of several of the major challenges and opportunities concerning water quality impacts on aquatic ecosystem health. It will be important to maintain broad-based expertise and flexibility to address the full range of long-term water quality issues facing the Nation’s water resources.

Open-File Report

Migrated hydrocarbons in exposure of Maastrichtian nonmarine strata near Saddle Mountain, lower Cook Inlet, Alaska

Magoon and others (1980) described an 83-meter- (272-foot-) thick succession of Maastrichtian (Upper Cretaceous) conglomerate, sandstone, mudstone, and coal exposed on the south side of an unnamed drainage, approximately 3 kilometers (1.8 miles) east of Saddle Mountain in lower Cook Inlet (figs. 1 and 2). The initial significance of this exposure was that it was the first reported occurrence of nonmarine rocks of this age in outcrop in lower Cook Inlet, which helped constrain the Late Cretaceous paleogeography of the area and provided important information on the composition of latest Mesozoic sandstones in the basin. The Saddle Mountain section is thought to be an outcrop analog for Upper Cretaceous nonmarine strata penetrated in the OCS Y-0097 #1 (Raven) well, located approximately 40 kilometers (25 miles) to the south–southeast in Federal waters (fig. 1). Atlantic Richfield Company (ARCO) drilled the Raven well in 1980 and encountered oil-stained rocks and moveable liquid hydrocarbons between the depths of 1,760 and 3,700 feet. Completion reports on file with the Bureau of Ocean Energy Management (BOEM; formerly Bureau of Ocean Energy Management, Regulation and Enforcement, and prior to 2010, U.S. Minerals Management Service) either show flow rates of zero or do not mention flow rates. A fluid analysis report on file with BOEM suggests that a wireline tool sampled some oil beneath a 2,010-foot diesel cushion during the fl ow test of the 3,145–3,175 foot interval, but the recorded fl ow rate was still zero (Kirk Sherwood, written commun., January 9, 2012). Further delineation and evaluation of the apparent accumulation was never performed and the well was plugged and abandoned. As part of a 5-year comprehensive evaluation of the geology and petroleum systems of the Cook Inlet forearc basin, the Alaska Division of Geological & Geophysical Surveys obtained a research permit from the National Park Service to access the relatively poorly understood ‘Saddle Mountain exposure’ that is located in the Lake Clark National Park and Preserve. This work was done in cooperation with the Alaska Division of Oil & Gas and U.S. Geological Survey (USGS) research geologists. This report expands on Magoon and others’ (1980) description of the exposure, presents new data on sandstone composition and reservoir quality, presents new geochemical data on petroleum extracted from the outcropping sandstone, and describes oil-bearing correlative strata penetrated by the Raven well. Although the exposure is more than a kilometer (0.6 mile) east of Saddle Mountain (fig. 2), in this report we variously refer to it as the Saddle Mountain succession, Saddle Mountain section, or the rocks at Saddle Mountain underlain by Upper Jurassic strata of the Naknek Formation.

Alaska

To burn or not to burn Oriental bittersweet: A fire manager’s conundrum

This is the third progress report detailing the research about Oriental bittersweet ( Celastrus orbiculatus ) and fire which has been ongoing for three years. We highlight the further results from three components of the study: 1) Susceptibility of different habitats to invasion of Oriental bittersweet, 2) The impact of fire on established individuals of Oriental bittersweet, and 3) Modeling Oriental bittersweet invasion proliferation and presence on the basis of fire history and vegetation.

Indiana

To burn or not to burn Oriental bittersweet: A fire manager’s conundrum

This is the second progress report detailing the research about Oriental bittersweet ( Celastrus orbiculatus ) and fire which has been ongoing for two years. We highlight the further results from three components of the study: 1) Susceptibility of different habitats to invasion of Oriental bittersweet, 2) The impact of fire on established individuals of Oriental bittersweet, and 3) Modeling Oriental bittersweet invasion proliferation and presence on the basis of fire history and vegetation.

Indiana

Cartographic research 1977

Two major subjects of the current research of the Topographic Division as reported here are related to policy decisions affecting the National Mapping Program of the Geological Survey. The adoption of a metric mapping policy has resulted in new cartographic products with associated changes in map design that require new looks in graphics and new equipment. The increasing use of digitized cartographic information has led to developments in data acquisition, processing, and storage and consequent changes in equipment and techniques. This report summarizes the activities in cartographic research and development for the 12-month period ending June 1977 and covers work done at the several facilities of the Topographic Division: the Western Mapping Center at Menlo Park, Calif., the Rocky Mountain Mapping Center at Denver, Colo., the Mid-Continent Mapping Center at Rolla, Mo., and the Eastern Mapping Center, the Special Mapping Center, the Office of Plans and Program Development, and the Office of Research and Technical Standards all at Reston, Va.

Report

Shallow geologic framework of the Mississippi Sound and the potential for sediment resources

The Mississippi Sound, an estuarine environment located between the mainland and barrier islands bordering the northern Gulf of America (formerly the Gulf of Mexico), serves as a vital ecosystem for the States of Mississippi and Alabama. Spanning approximately 100 kilometers from east to west and covering 1,400 square kilometers, the sound is home to marine industry and ports, and its shallow and brackish waters sustain a diverse array of marine life. Barrier islands along the southern edge of the sound separate the microtidal estuary from the Gulf of America. This protection from gulf wave action mediates current flow within the sound, resulting in predominantly fine-grained sediment deposition along the seafloor. This study, conducted by the U.S. Geological Survey in cooperation with the U.S. Army Corps of Engineers, provides insight on fluvial and tidal processes spanning the past 5,000 years. The report synthesizes existing research to provide a comprehensive overview of the sound geology, from Pleistocene origins to present-day morphology, and utilizes high-resolution single channel seismic profiles and sediment data to identify and map sedimentary deposits and morphologic features at and below the seafloor. Despite its ecological significance, the Mississippi Sound faces environmental challenges, including water-quality issues, habitat degradation, storm-induced erosion, and the ongoing threats of sea-level rise and environmental changes. This study uses the present-day understanding of the sound's geology to inform coastal management decisions, hazard assessment, and potential mineral resources.

Louisiana, Mississippi

Snake River fall Chinook salmon life history investigations: Annual report 2010

This report summarizes three research activities conducted in 2010-2011. The first was a radiotelemetry study conducted in the lower Clearwater River. The second was a hydroacoustic study conducted in Lower Granite and Little Goose reservoirs. The third was an analysis of covariates affecting juvenile fall Chinook salmon survival and behavior. In 2010, we used radiotelemetry to evaluate the migratory behavior, delay, and relative mortality of subyearling fall Chinook salmon in the Clearwater River and Lower Granite Reservoir. We captured, tagged, and released a total of 100 run-at-large subyearlings in the Transition Zone of the lower Clearwater River in late July and monitored their downstream movement past fixed detection sites and by mobile tracking through the end of August. The Transition Zone is that portion of the river where it transitions from free-flowing to impounded habitat. Median residence time of fish that passed through the Transition Zone, Confluence, and Upper Reservoir reaches was relatively short (8.8-25.6 h). However, for fish that remained in the Transition Zone that were detected by mobile tracking, median residence time was over 30 d (N=6). Median migration rates through the study reaches were variable but slow (range 2.9-17.2 km/d) compared to that of more active migrants indicating that subyearlings from the Clearwater River were not actively migrating during July and August. The fate of radio-tagged subyearlings was determined from mobile tracking records. A total of 37 of the 71 fish detected during tracking were deemed to be dead, 22 were determined to be alive, and the fate of 16 was unknown. We also radio tagged 66 smallmouth bass in the Confluence reach and later detected 59 bass during mobile tracking. Predators were primarily located along shorelines in the Confluence reach, but a few fish did swim downstream into the Upper Reservoir reach. Most radio-tagged subyearlings that we determined to be dead were also located in shoreline areas suggesting that predation could account for some of the mortality we observed.

Oregon, Washington

Agencies collaborate, develop a cyanobacteria assessment network

Cyanobacteria are a genetically diverse group of photosynthetic microorganisms that occupy a broad range of habitats on land and water all over the world. They release toxins that can cause lung and skin irritation, alter the taste and odor of potable water, and cause human and animal illness. Cyanobacteria blooms occur worldwide, and climate change may increase the frequency, duration, and extent of these bloom events. Rapid detection of potentially harmful blooms is essential to protect humans and animals from exposure. Information about potential for exposure, such as bloom duration, frequency, and extent, is especially critical for developing environmental management decisions during periods of limited resources and funding. The National Research Council (NRC) report Exposure Science in the 21st Century suggested that effectively assessing and mitigating exposures requires techniques for rapid measurement of a stressor, such as an algal bloom, across diverse geographic, temporal, and biologic scales (e.g., various bloom concentrations) and an enhanced infrastructure to address threats [ NRC , 2012]. The report specifically calls for approaches that use diverse information, such as satellite remote sensing, to identify and understand exposures that may pose a threat to ecosystems or human health. A collaborative effort integrates the work of the U.S. Environmental Protection Agency (EPA), NASA, the National Oceanic and Atmospheric Administration (NOAA), and the U.S. Geological Survey (USGS) to provide an approach for using satellite ocean color capabilities in U.S. fresh and brackish water quality management decisions. The overarching goal of this collaborative project is to detect and quantify cyanobacteria blooms using satellite data records in order to support the environmental management and public use of U.S. lakes and reservoirs. Satellite remote sensing tools may enable policy makers and environmental managers to assess the sustainability of watershed ecosystems and the services they provide, now and in the future. Satellite technology allows us to develop early-warning indicators of cyanobacteria blooms at the local scale while maintaining continuous national coverage.

Eos, Earth and Space Science News

Volcano-Monitoring Instrumentation in the United States, 2008

The United States is one of the most volcanically active countries in the world. According to the global volcanism database of the Smithsonian Institution, the United States (including its Commonwealth of the Northern Mariana Islands) is home to about 170 volcanoes that are in an eruptive phase, have erupted in historical time, or have not erupted recently but are young enough (eruptions within the past 10,000 years) to be capable of reawakening. From 1980 through 2008, 30 of these volcanoes erupted, several repeatedly. Volcano monitoring in the United States is carried out by the U.S. Geological Survey (USGS) Volcano Hazards Program, which operates a system of five volcano observatories-Alaska Volcano Observatory (AVO), Cascades Volcano Observatory (CVO), Hawaiian Volcano Observatory (HVO), Long Valley Observatory (LVO), and Yellowstone Volcano Observatory (YVO). The observatories issue public alerts about conditions and hazards at U.S. volcanoes in support of the USGS mandate under P.L. 93-288 (Stafford Act) to provide timely warnings of potential volcanic disasters to the affected populace and civil authorities. To make efficient use of the Nation's scientific resources, the volcano observatories operate in partnership with universities and other governmental agencies through various formal agreements. The Consortium of U.S. Volcano Observatories (CUSVO) was established in 2001 to promote scientific cooperation among the Federal, academic, and State agencies involved in observatory operations. Other groups also contribute to volcano monitoring by sponsoring long-term installation of geophysical instruments at some volcanoes for specific research projects. This report describes a database of information about permanently installed ground-based instruments used by the U.S. volcano observatories to monitor volcanic activity (unrest and eruptions). The purposes of this Volcano-Monitoring Instrumentation Database (VMID) are to (1) document the Nation's existing, ground-based, volcano-monitoring capabilities, (2) answer queries within a geospatial framework about the nature of the instrumentation, and (3) provide a benchmark for planning future monitoring improvements. The VMID is not an archive of the data collected by monitoring instruments, nor is it intended to keep track of whether a station is temporarily unavailable due to telemetry or equipment problems. Instead, it is a compilation of basic information about each instrument such as location, type, and sponsoring agency. Typically, instruments installed expressly for volcano monitoring are emplaced within about 20 kilometers (km) of a volcanic center; however, some more distant instruments (as far away as 100 km) can be used under certain circumstances and therefore are included in the database. Not included is information about satellite-based and airborne sensors and temporarily deployed instrument arrays, which also are used for volcano monitoring but do not lend themselves to inclusion in a geospatially organized compilation of sensor networks. This Open-File Report is provided in two parts: (1) an Excel spreadsheet (http://pubs.usgs.gov/of/2009/1165/) containing the version of the Volcano-Monitoring Instrumentation Database current through 31 December 2008 and (2) this text (in Adobe PDF format), which serves as metadata for the VMID. The disclaimer for the VMID is in appendix 1 of the text. Updated versions of the VMID will be posted on the Web sites of the Consortium of U.S. Volcano Observatories (http://www.cusvo.org/) and the USGS Volcano Hazards Program http://volcanoes.usgs.gov/activity/data/index.php.

Alaska, Arizona, California, Colorado, Hawaii, New

Assessing the socioeconomic impact and value of open geospatial information

The production and accessibility of geospatial information including Earth observation is changing greatly both technically and in terms of human participation. Advances in technology have changed the way that geospatial data are produced and accessed, resulting in more efficient processes and greater accessibility than ever before. Improved technology has also created opportunities for increased participation in the gathering and interpretation of data through crowdsourcing and citizen science efforts. Increased accessibility has resulted in greater participation in the use of data as prices for Government-produced data have fallen and barriers to access have been reduced. The increase in participation in the production and in the use of data, defined as data democracy for this workshop, are having great impacts on economics and more generally on society. There is also a strong drive by governments around the world, as shown by the G8 Declaration in June 2013, to make public sector information and scientific data more widely accessible. These are respectively termed “open data” and “open research data.” This report summarizes discussion at the Workshop on Assessing the Impact and Value of Open Geospatial Information held at George Washington University in Washington, D.C. in October 2014. Workshop participants examined the consequences of expanding data democracy with a focus on its socioeconomic impacts. Evaluations were presented of state-of-the-art methods to assess these socioeconomic impacts, which included position papers and remarks by discussants. The workshop included discussions about the following topics: (1) increased and expanded information sources; (2) societal impacts, including approaches to economics assessments; (3) constraints to open access, including the demands for return on investment, specifications of intellectual property rights, and privacy issues; and (4) learning from the experiences of other data-rich domains, such as environmental management, internet businesses, health, and transportation. The workshop was a working meeting with strong participant engagement, leading to recommendations for action. The meeting included five topic-driven sessions and keynote presentations. Precirculated position papers for each panel session facilitated preparation and remarks by discussants. After the position papers are updated following the discussants’ remarks, it is planned to submit them for publication. The workshop included 68 participants coming from international organizations, the U.S. public and private sectors, nongovernmental organizations, and academia. Participants included policy makers and analysts, financial analysts, economists, information scientists, geospatial practitioners, and other discipline experts.

Open-File Report

Monitoring framework to evaluate effectiveness of aquatic and floodplain habitat restoration activities for native fish along the Willamette River, northwestern Oregon

Since 2008, large-scale restoration programs have been implemented along the Willamette River, Oregon, to address historical losses of floodplain habitats caused by dam construction, bank protection, large wood removal, land conversion, and other anthropogenic influences. The Willamette Focused Investment Partnership (WFIP) restoration initiative brings together more than 16 organizations to improve floodplain habitats on more than 35,000 hectares upstream from Willamette Falls with the overarching goal to expand and enhance native fish habitats through the following restoration activities implemented along the floodplains and off-channel areas of the Willamette River: (A) modify floodplain topography and human-made barriers to inundation; (B) enhance gravel pits; (C) remove revetments; (D) construct off-channel features; (E) increase and enhance floodplain forest vegetation; and (F) treat aquatic invasive plant species (AIS). The WFIP Effectiveness Monitoring Program was initiated to inform future refinement of Willamette River restoration program goals and activities and has three goals: (1) evaluate the effectiveness of different restoration activities at increasing and enhancing native fish habitat, (2) improve overall understanding of the physical and ecological responses associated with different restoration activities undertaken by the WFIP, and (3) relate site-scale responses to restoration with broader patterns of fish communities, hydrogeomorphology, stream temperature, and vegetation across the Willamette River floodplain, so that the relative importance of restoration activities on habitat availability for native fish can be assessed. A monitoring framework was developed to evaluate effectiveness of floodplain restoration activities at increasing and enhancing habitat for native fish in the Willamette River corridor, northwestern Oregon. This framework describes monitoring indicators, metrics, and approaches for evaluating responses in native fish communities and physical habitat conditions to restoration activities and determining effectiveness of restoration activities at improving habitats for native fish. The monitoring indicators and approaches are grouped into five restoration monitoring categories that are useful for characterizing ecological and physical habitat responses to restoration activities: fish, hydrogeomorphology, floodplain forest vegetation, birds, and AIS. This monitoring framework provides a common science foundation to support collaborative decisions on future interdisciplinary effectiveness monitoring activities for Willamette River restoration programs. To evaluate restoration effectiveness, data must be evaluated according to metrics and thresholds that permit direct comparison between habitat conditions at the restoration site and restoration program goals; this framework provides examples of metrics and thresholds for evaluating data, recognizing that the precise evaluation criteria for a particular site or program will need to be tailored to meet program questions and available resources. Refining restoration goals and activities as part of an adaptively managed process requires addressing critical uncertainties between restoration goals, restoration activities, and outcomes for habitats used by native fish. Although the monitoring activities of this framework will generate important datasets useful for evaluating restoration effectiveness, additional research, syntheses, and reporting is ultimately necessary to provide a common science foundation to support adaptively managed restoration programs. This report is intended as a resource for restoration program managers, practitioners, scientists, and contractors as they develop detailed annual monitoring plans for data collection and identify the monitoring indicators, metrics, and approaches that are appropriate for evaluating effectiveness of different restoration activities.

Oregon

Food habits of mute swans in the Chesapeake Bay

Unlike the tundra swan (Cygnus columbianus) that migrate to the Bay for the winter, the mute swan (Cygnus olor) is a year long resident and therefore has raised concerns among research managers over reports of conflicts with nesting native water birds and the consumption of submerged aquatic vegetation (SAV). Although data on the reduction of SAV by nesting mute swans and their offspring during the spring and summer are limited, food-habits data show that mute swans rely heavily on SAV during these months. Analyses of the gullet and gizzard of mute swans indicate that widgeon grass (Ruppia maritima) and eelgrass (Zostera marina) were the most important food items to mute swans during the winter and spring. Other organisms were eaten by mute swans, but represent small percentages of food. Corn (Zea mays) fed to the swans by Bay residents in late winter probably supplements their limited vegetative food resources at that time of year.

Book chapter

Discharge characteristics of embankment-shaped weirs

An embankment-shaped weir is an embankment overtopped by flood waters. Among the engineering problems frequently resulting from. this occurrence is the need to compute the peak discharge from postflood yield observations. The research described in this. report was concerned with the theoretical and experimental bases for the computation procedure. The research had two main objectives. One was to determine the relationship between embankment form and roughness and some of the more important discharge characteristics. The second was to define, theoretically and experimentally, the relationship between free-flow discharge and the boundary layer on the roadway. The first objective was accomplished with the experimental determination of coefficients of discharge and other significant flow characteristics for a variety of boundary and flow conditions. The second objective was accomplished with the development and experimental verification of a discharge equation which involved the boundary layer displacement thickness. This phase of the research included a general investigation of boundary layer growth on the roadway. It is included that both free- and submerged-flow discharge are virtually independent of the influence of embankment shape and relative height. The influence of boundary resistance is appreciable only for smaller heads. The most practical solution for discharge is one which is based on. the simple weir equation and experimentally determined coefficients. A completely analytical equation of discharge is impractical. The report contains the results of 936 experiments on the discharge characteristics of 17 different models; plus 106 boundary-layer velocity traverses on 4 different models. The data are summarized in both graphical and tabular form.

Water Supply Paper

Yellowstone grizzly bear investigations: Annual report of the Interagency Grizzly Bear Study Team, 2001

The contents of this Annual Report summarize results of monitoring and research from the 2001 field season. The report also contains a summary of nuisance grizzly bear ( Ursus arctos horribilis ) management actions. In addition to our normal monitoring, we completed an array of studies addressing the potential impacts of winter recreation on denning grizzly bears. This research was in response to a lawsuit filed against the Gallatin National Forest and subsequent need to develop a biological assessment addressing effects of snowmobile use on grizzly bears (Chemy 2001). Research results were also used by the National Park Service for a biological assessment and winter use plan (U.S. Department of the Interior 2001). The Interagency Grizzly Bear Study Team (IGBST) was able to use existing data collected from collared bears to address several issues and data needs for both agencies. Denning chronology (Haroldson et al. 2002), denning areas (Podruzny et al. 2002), and grizzly distribution (Schwartz et al. 2002) were all addressed. Information from these studies was presented at the International Association for Bear Research and Management (IBA) in Jackson Hole, Wyoming in 2001, and all 3 manuscripts have been officially accepted for publication in the journal Ursus . Abstracts are attached to this report (Appendices A, B. and C). Additionally, members of the study team participated in a workshop held by the National Park Service to develop monitoring protocols addressing the impacts of snowmobiles on wildlife (Graves and Reams 2001). The study team has also been working on issues associated with counts of unduplicated females with cubs-of-the-year (COY). These counts are used to establisha minimum population size, which is then used to establish mortality thresholds for the Recovery Plan (U.S. Fish and Wildlife Service [USFWS) 1993). Efforts by the Study Team to calculate more statistically sound estimates of population size have been underway for sometime. Eberhardt and Knight (1996) applied a Peterson-type capturemark-recapture estimator to unduplicated counts, and Boyce et al. (1999) recommended a maximum likelihood method. These methods assumed equal sightability of families, which was unrealistic for the Yellowstone population. Consequently, Boyce et al. (2001) recommended using a negative binomial distribution but found that they obtained reasonable results only when the coefficient of variation among sightings was assumed to be constant overtime. This assumption is also difficult to justify. Recent work by the study team (Keating et al. 2002) evaluated the application of 7 nonparametric estimators to assess their performance in determining the number of females with COY in a given year. This work identified 2 estimators that performed well using Monte Carlo simulations over a range of sampling conditions deemed plausible for the Yellowstone population: Chao's estimator (Chao 1984) and the sample coverage estimator (Chao and Lee 1992, Lee and Chao 1994). This work was presented at the IBA meeting in Jackson and the manuscript has been accepted in the journal Ursus . An abstract of this work is attached to this annual report (Appendix D). We are currently refining the application of these techniques to expand the predicted number of females with COY into a total population estimate. We anticipate completion of that work in 2002 or 2003.

Idaho, Montana, Wyoming

Synthesis of climate and ecological science to support grassland management priorities in the North Central Region

Grasslands in the Great Plains are of ecological, economic, and cultural importance in the United States. In response to a need to understand how climate change and variability will impact grassland ecosystems and their management in the 21st century, the U.S. Geological Survey North Central Climate Adaptation Science Center led a synthesis of peer-reviewed climate and ecology literature relevant to grassland management in the North Central Region (including Montana, Wyoming, Colorado, North Dakota, South Dakota, Nebraska, and Kansas). This synthesis was done to begin to address grassland managers’ information needs and identify research gaps. This open-file report summarizes the impacts of climate change and variability on temperature, water availability, wildfire, vegetation, wildlife, large-bodied ruminants, grazing, and land-use change and the implications for grassland management in the North Central region. This open-file report also identifies areas in which further research is needed. U.S. Geological Survey funded this project.

Colorado, Kansas, Montana, Nebraska, North Dakota,

Upscaling of U (VI) desorption and transport from decimeter‐scale heterogeneity to plume‐scale modeling

Scientifically defensible predictions of field scale U(VI) transport in groundwater requires an understanding of key processes at multiple scales. These scales range from smaller than the sediment grain scale (less than 10 μm) to as large as the field scale which can extend over several kilometers. The key processes that need to be considered include both geochemical reactions in solution and at sediment surfaces as well as physical transport processes including advection, dispersion, and pore-scale diffusion. The research summarized in this report includes both experimental and modeling results in batch, column and tracer tests. The objectives of this research were to: (1) quantify the rates of U(VI) desorption from sediments acquired from a uranium contaminated aquifer in batch experiments;(2) quantify rates of U(VI) desorption in column experiments with variable chemical conditions, and(3) quantify nonreactive tracer and U(VI) transport in field tests.

Colorado