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Description and testing of the Geo Data Portal: Data integration framework and Web processing services for environmental science collaboration

Interest in sharing interdisciplinary environmental modeling results and related data is increasing among scientists. The U.S. Geological Survey Geo Data Portal project enables data sharing by assembling open-standard Web services into an integrated data retrieval and analysis Web application design methodology that streamlines time-consuming and resource-intensive data management tasks. Data-serving Web services allow Web-based processing services to access Internet-available data sources. The Web processing services developed for the project create commonly needed derivatives of data in numerous formats. Coordinate reference system manipulation and spatial statistics calculation components implemented for the Web processing services were confirmed using ArcGIS 9.3.1, a geographic information science software package. Outcomes of the Geo Data Portal project support the rapid development of user interfaces for accessing and manipulating environmental data.

Open-File Report

Land processes distributed active archive center product lifecycle plan

The U.S. Geological Survey (USGS) Earth Resources Observation and Science (EROS) Center and the National Aeronautics and Space Administration (NASA) Earth Science Data System Program worked together to establish, develop, and operate the Land Processes (LP) Distributed Active Archive Center (DAAC) to provide stewardship for NASA’s land processes science data. These data are critical science assets that serve the land processes science community with potential value beyond any immediate research use, and therefore need to be accounted for and properly managed throughout their lifecycle. A fundamental LP DAAC objective is to enable permanent preservation of these data and information products. The LP DAAC accomplishes this by bridging data producers and permanent archival resources while providing intermediate archive services for data and information products.

Open-File Report

Processing of multichannel seismic reflection data acquired in 2013 for seismic investigations of gas hydrates in the Gulf of Mexico

As part of a cooperative effort among the U.S. Geological Survey (USGS), the U.S. Department of Energy, and the U.S. Department of the Interior Bureau of Ocean Energy Management, two grids of two-dimensional multichannel seismic reflection data were acquired in the Gulf of Mexico over lease blocks Green Canyon 955 and Walker Ridge 313 between April 18 and May 3, 2013. The purpose of the data acquisition was to fill knowledge gaps in an ongoing study of known gas hydrate accumulations in the area. These data were initially processed onboard the recording ship R/V Pelican for more quality control during the recording. The data were subsequently processed in detail by the U.S. Geological Survey in Denver, Colorado, in two phases. The first phase was to create a “kinematic” dataset that removed extensive noise present in the data but did not preserve relative amplitudes. The second phase was to create a true relative amplitude dataset that included noise removal and “wavelet” deconvolution that preserved the amplitude information. This report describes the processing techniques used to create both datasets.

Open-File Report

Benthic processes affecting contaminant transport in Upper Klamath Lake, Oregon

Executive Summary Multiple sampling trips during calendar years 2013 through 2015 were coordinated to provide measurements of interdependent benthic processes that potentially affect contaminant transport in Upper Klamath Lake (UKL), Oregon. The measurements were motivated by recognition that such internal processes (for example, solute benthic flux, bioturbation and solute efflux by benthic invertebrates, and physical groundwater-surface water interactions) were not integrated into existing management models for UKL. Up until 2013, all of the benthic-flux studies generally had been limited spatially to a number of sites in the northern part of UKL and limited temporally to 2–3 samplings per year. All of the benthic invertebrate studies also had been limited to the northern part of the lake; however, intensive temporal (weekly) studies had previously been completed independent of benthic-flux studies. Therefore, knowledge of both the spatial and temporal variability in benthic flux and benthic invertebrate distributions for the entire lake was lacking. To address these limitations, we completed a lakewide spatial study during 2013 and a coordinated temporal study with weekly sampling of benthic flux and benthic invertebrates during 2014. Field design of the spatially focused study in 2013 involved 21 sites sampled three times as the summer cyanobacterial bloom developed (that is, May 23 , June 13 , and July 3, 2013). Results of the 27-week, temporally focused study of one site in 2014 were summarized and partitioned into three periods (referred to herein as pre-bloom, bloom and post-bloom periods), each period involving 9 weeks of profiler deployments, water column and benthic sampling. Partitioning of the pre-bloom, bloom, and post-bloom periods were based on water-column chlorophyll concentrations and involved the following date intervals, respectively: April 15 through June 10 , June 17 through August 13 , and August 20 through October 16, 2014. To examine dissolved-solute (0.2-micrometer [μm] filtered) benthic flux, sets of nonmetallic pore-water profilers (U.S. Patent 8,051,727 B1) were deployed. In 2013, the deployment of profilers at 21 UKL sites occurred at the beginning of the annual cyanobacterial bloom of Aphanizomenon flos–aquae (AFA), in the middle of the bloom period, and at the peak of the bloom. Coordinated benthic invertebrate collections also were made. Based on results from 2013, weekly deployments of profilers and collection of benthic invertebrate samples from late spring to early autumn were used to estimate temporal trends in solute flux and benthic invertebrate densities. Estimates of nutrient efflux by benthic invertebrates were determined in the spring and autumn from 2011 through 2013 and three times (spring, summer, and autumn) in 2015. This work extends UKL studies that began in 2006 to quantify the importance of benthic solute sources in the lake. In 2015, piezometers and thermistor sets were deployed to quantify potential groundwater exchange with the lake water column. Analysis of the 2013 soluble reactive phosphorus (SRP) benthic flux indicated no effect of location (lake region), habitat, or sampling period, and the average lakewide flux values were consistent with earlier studies that had been confined to the northern region of UKL and adjacent wetlands. The 2014 study therefore focused on estimating temporal trends at a site within Ball Bay. During both 2013 and 2014 field studies, fluxes of macronutrients (soluble reactive phosphorus (SRP) and ammonia) and micronutrients (iron [Fe] and manganese [Mn]) were consistently positive and increased prior to the initial AFA bloom, varied or lagged with water-column chlorophyll during the summer bloom period, then decreased after the cyanobacterial blooms, only to rebound toward pre-bloom conditions in the final weeks of sampling. These four solutes exhibited benthic loads greater than maximum riverine loads estimated during the spring and early summers of 2013 and 2014. However, consistently detectable concentrations for all four solutes provide no evidence that they consistently serve as the limiting nutrient for primary production in the lake. In contrast to the four solutes (SRP, ammonia, Fe, and Mn), benthic fluxes of dissolved arsenic (As) were both negative and positive (that is, the lakebed currently serves as both a source and a sink for dissolved As, depending on season). In a further contrast with SRP, ammonia, dissolved Fe, and Mn, dissolved-As riverine loads to UKL were of similar magnitude to benthic loads. A negative relationship between dissolved-As flux and water-column As over the 2014 temporal study provides a potential advantage for the management of water-quality in contrast to solutes, like SRP or ammonia, with consistently positive flux. The mean total benthic invertebrate density during 2013 was 12,610 individuals per square meter (n=63). Although benthic invertebrate density did not change over the study period, it was higher in littoral habitats than open-lake or trench habitats and higher in the northern region compared to the central or southern regions of UKL. Mean total benthic invertebrate density during 2014 was 19,726 individuals m −2 (n=27). Density during the pre-bloom and bloom periods of April 15 to August 13, 2014 (the first two thirds of the 2014 sampling period), were similar to 2013. However, benthic invertebrate density more than doubled during the latter one-third of the study, that is, the post-bloom period between August 20 to October 16, 2014. Oligochaeta, Chironomidae and Hirudinea represented well over 90 percent of the benthic fauna; Oligochaeta were twice as abundant as Chironomidae or Hirudinea, the latter two of which were similar in density. Benthic invertebrates may enhance dissolved-nutrient (or toxicant) transport across the sediment-water interface by (1) modifying diffusion-layer thicknesses and permeability through bioturbation, (2) enhancing advective flow across the interface through bioirrigation, and (3) excreting or expelling dissolved or particulate solutes directly into the overlying water column (Boudreau and Jorgensen, 2001). We evaluated SRP efflux via excretion for approximately 15 different major taxa in UKL. Once these measures were scaled, it was evident that benthic invertebrates potentially contribute approximately 1.5 times the amount of SRP to the water column of Upper Klamath Lake as diffusive SRP flux alone, measured in profiler deployments. Sets of piezometers and temperature loggers were deployed in UKL to obtain estimates of vertical advective solute flux. The pressure transducer installations, within the piezometers, did not perform as designed, rendering the head gradient data unreliable. However, in terms of future research, this field work did demonstrate the feasibility of collecting vertical gradient data with piezometer deployments. Advective flux estimates herein are based solely on heat-flow modeling based on temperature data from four lake sites, without use of transducer data. Given the magnitudes (both positive or negative) of the heat-transfer fluxes for SRP, relative to diffusive-flux and macroinvertebrate efflux measurements (all positive but spanning the same orders of magnitude), further examination of solute advective flux is recommended as a potential transport process to integrate into existing water-quality (for example, Total Maximum Daily Load [TMDL]) models. As a complement to the biogeochemical focus of this study, initial analyses of suspended-particle (floc) characteristics and settling velocities from the water column were derived near the surface and lakebed at two UKL sites. To better understand changing particle characteristics during the AFA-bloom period, suspended particles were examined in 2015 using a LabSFLOC (LF), which is a Laboratory Spectral Flocculation Characteristics version of an In-Situ Settling Velocity instrument (INSSEV-LF). Particle characteristics and settling velocities were analyzed from the water column near the surface (sample dp_10 ) and lakebed (sample dp_90 ) at two lake sites (open-lake site ML and littoral site LS01). The term “floc” refers herein to suspended particles that may aggregate or disaggregate to change in size, composition, and settling velocity. During pre-bloom (May) conditions, where maximum suspended particulate matter concentration (SPMC) was 140 milligrams per liter (mg L −1 ) was now observed at site LS01 in close proximity to the bed, where D mean peaked at 305 μm, and the corresponding Ws mean was 3.9 millimeters per second (mm s −1 ). The high near-bed SPMC (828 mg L −1 ) experienced during post-bloom October 2015 at LS01 formed a benthic nepheloid layer (BNL) above the lake’s bed. Numerous low density, fast settling macrofloc-sized organic aggregates (D >160 μm) were observed (some up to 1 mm in size) near bed at LS01 both during the bloom and post-bloom conditions; many of these flocs displayed fibrous organic structures. In terms of mass settling fluxes, the post-bloom BNL produced a total MSF of 4,139 milligrams per square meter per second (mg m −2 s −1 ) (92.1 percent of MSF credited to the macrofloc-sized organic aggregates/cyanobacterial colonies); that was nearly three times the corresponding near-bed settling flux observed during the July 2015 bloom and 360 times greater than the pre-bloom conditions from May 2015 (98.8 percent and 14 percent of MSF credited to the macrofloc-sized fractions for those respective months). Such changes in the near-bed settling flux demonstrate the highly significant seasonal effects that the AFA bloom has on the floc depositional fluxes in UKL and highlights the importance of seasonal monitoring of these conditions in order to correctly parameterize the wide range in depositional characteristics and floc properties measured throughout UKL. Collectively, floc populations observed within UKL demonstrated a wide range in settling velocity (Ws) for a given particle size, D. Similarly, a given settling velocity was not associated with a specific particle size. This variability in particle characteristics and properties indicates the influence of varying floc effective density and its effect on mass and mass settling fluxes (MSF). The use of instruments, such as the INSSEV-LF, enables measuring the variability of settling velocity and its relation to particle density and size.

Oregon

Guidelines for collecting and processing samples of stream bed sediment for analysis of trace elements and organic contaminants for the National Water-Quality Assessment Program

A major component of the U.S. Geological Survey's National Water-Quality Assessment program is to assess the occurrence and distribution of trace elements and organic contaminants in streams. The first phase of the strategy for the assessment is to analyze samples of bed sediments from depositional zones. Fine-grained particles deposited in these zones are natural accumulators of trace elements and hydrophobic organic compounds. For the information to be comparable among studies in many different parts of the Nation, strategies for selecting stream sites and depositional zones are critical. Fine-grained surficial sediments are obtained from several depositional zones within a stream reach and composited to yield a sample representing average conditions. Sample collection and processing must be done consistently and by procedures specifically designed to separate the fine material into fractions that yield uncontaminated samples for trace-level analytes in the laboratory. Special coring samplers and other instruments made of Teflon are used for collection. Samples are processed through a 2.0-millimeter stainless-steel mesh sieve for organic contaminate analysis and a 63-micrometer nylon-cloth sieve for trace-element analysis. Quality assurance is maintained by strict collection and processing procedures, duplicate samplings, and a rigid cleaning procedure.

Open-File Report

Computer Programs to Display and Modify Data in Geographic Coordinates and Methods to Transfer Positions to and from Maps, with Applications to Gravity Data Processing, Global Positioning Systems, and 30-Meter Digital Elevation Models

Computer programs were written in the Fortran language to process and display gravity data with locations expressed in geographic coordinates. The programs and associated processes have been tested for gravity data in an area of about 125,000 square kilometers in northwest Nevada, southeast Oregon, and northeast California. This report discusses the geographic aspects of data processing. Utilization of the programs begins with application of a template (printed in PostScript format) to transfer locations obtained with Global Positioning Systems to and from field maps and includes a 5-digit geographic-based map naming convention for field maps. Computer programs, with source codes that can be copied, are used to display data values (printed in PostScript format) and data coverage, insert data into files, extract data from files, shift locations, test for redundancy, and organize data by map quadrangles. It is suggested that 30-meter Digital Elevation Models needed for gravity terrain corrections and other applications should be accessed in a file search by using the USGS 7.5-minute map name as a file name, for example, file '40117_B8.DEM' contains elevation data for the map with a southeast corner at lat 40? 07' 30' N. and lon 117? 52' 30' W.

Open-File Report

Volcanic processes and geology of Augustine Volcano, Alaska

Augustine Island (volcano) in lower Cook Inlet, Alaska, has erupted repeatedly in late-Holocene and historical times. Eruptions typically beget high-energy volcanic processes. Most notable are bouldery debris avalanches containing immense angular clasts shed from summit domes. Coarse deposits of these avalanches form much of Augustine's lower flanks. A new geologic map at 1:25,000 scale depicts these deposits, these processes. We correlate deposits by tephra layers calibrated by many radiocarbon dates.Augustine Volcano began erupting on the flank of a small island of Jurassic clastic-sedimentary rock before the late Wisconsin glaciation (late Pleistocene). The oldest known effusions ranged from olivine basalt explosively propelled by steam, to highly explosive magmatic eruptions of dacite or rhyodacite shed as pumice flows. Late Wisconsin piedmont glaciers issuing from the mountainous western mainland surrounded the island while dacitic eruptive debris swept down the south volcano flank.Evidence is scant for eruptions between the late Wisconsin and about 2,200 yr B.P. On a few south-flank inliers, thick stratigraphically low pumiceous pyroclastic-flow and fall deposits probably represent this period from which we have no radiocarbon dates on Augustine Island. Eruptions between about 5,350 and 2,200 yr B.P. we know with certainty by distal tephras. On Shuyak Island 100 km southeast of Augustine, two distal fall ashes of Augustinian chemical provenance (microprobe analysis of glass) date respectively between about 5,330 and 5,020 yr B.P. and between about 3,620 and 3,360 yr B.P. An Augustine ash along Kamishak Creek 70 km southwest of Augustine dates between about 3,850 and 3,660 yr B.P. A probably Augustinian ash lying within peat near Homer dates to about 2,275 yr B.P.From before 2,200 yr B.P. to the present, Augustine eruptive products abundantly mantle the island. During this period, numerous coarse debris avalanches swept beyond Augustine's coast, most recently in A.D. 1883. The decapitated summit after the 1883 eruption, replaced by andesite domes of six eruptions since, shows a general process: collapse of steep summit domes, then the summit regrown by later dome eruptions. The island's stratigraphy is based on six or seven coarse-pumice tephra "marker beds." In upward succession they are layers G (2,100 yr B.P.), I (1,700 yr B.P.), H (1,400 yr B.P.), C (1,200-1,000 yr B.P.), M (750 yr B.P.), and B (390 yr B.P.).A coarse, hummocky debris-avalanche deposit older than about 2,100 yr B.P.-or perhaps a stack of three of them-lies along the east coast, the oldest exposed such bouldery diamicts on Augustine Island. Two large debris avalanches swept east and southeast into the sea between about 2,100 and 1,800 yr B.P. A large debris avalanche shed east and east-northeast into the sea between 1,700 and 14,00 yr B.P.Between about 1,400 and 1,100 yr B.P. debris avalanches swept into the sea on the volcano's south, southwest, and north-northwest. Pumiceous pyroclastic fans spread to the southeast and southwest, lithic pyroclastic flows and lahars (?) to the south and southeast. Pyroclastic flows, pyroclastic surges, and lahars swept down the west and south flanks between about 1,000 and 750 yr B.P.A debris avalanche swept into the sea on the west, and a small one on the south-southeast, between about 750 and 400 yr B.P. Large lithic pyroclastic flows shed to the southeast; smaller ones descended existing swales on the southwest and south.Between about 400 yr B.P. and historical time (late 1770s), three debris avalanches swept into the sea on the west-northwest, north-northwest, and north flanks. One of them (West Island) was large and fast: most of it rode to sea far beyond a former sea cliff, and its surface includes geomorphic evidence of having initiating a tsunami. Augustine's only conspicuous lava flow erupted on the north flank.During this prehistoric period numerous domes grew at the volcano's summit, remnants of which form the east and south sides of the present summit-dome complex. Three domes grew below the summit area on the upper south and northwest flanks. In between large eruptions that deposited coarse pumiceous fall beds, many smaller eruptions emplaced beds of sand-sized ash on the volcano flanks.During the past 750 years, beach and back-beach eolian dunes accreted at the southwest coast, forming a ribbed coastwise topography. Lesser dunes grew at the backs of beaches in coves on other flanks.An eruption in 1883 shed a debris avalanche swiftly into the sea on the north-northeast, followed by pyroclastic flows and surges. Eruptions in 1935 and 1963-64 grew summit domes that spilled over the southwest and south flanks and shed coarse rubbly lithic pyroclastic flows down those flanks. Eruptions and 1976 and 1986 grew domes that draped down the north flank and shed voluminous pyroclastic flows to the northeast through north-northwest flanks, when smaller pyroclastic flows and (or) lahars swept down other flanks. A small dome-building eruption in January-March 2006 after this report was all but complete we treat only fleetingly. The largest debris avalanches sweep into the sea at Augustine's coast at speeds inferred between 60 and 80 m/s. Augustine is capable of initiating damaging tsunami to lower Cook Inlet, but geologic evidence for them on the mainland is sporadic and sparse.

Alaska

Hydrology and climate of four watersheds in eastern Puerto Rico: Chapter C in Water quality and landscape processes of four watersheds in eastern Puerto Rico

Puerto Rico lies directly in the path of the easterly trade winds, which deliver steady rainfall to the mountains and steer tropical wave systems toward the island. Hurricanes and tropical storms derived from these tropical waves differ in frequency and intensity, contributing to substantial interannual variation in precipitation and stream discharge. Puerto Rico's steep topography and small water-storage capacity leave the island's water supply and developed flood plains vulnerable to extreme weather events, such as hurricanes, floods, and droughts. This vulnerability may increase in the future owing to ongoing change, both local (such as land-cover shifts, water-supply projects, and construction of roads and other infrastructure) and regional (climate variability and change). Climate change, which could lead to more intense and prolonged droughts as well as an increase in the magnitude and frequency of destructive storms in the Caribbean, may alter temperature and affect the availability of water for human and ecosystem needs. Accurate assessment of hydrologic regimes and water budgets is therefore crucial for effective management of water resources. As part of the U.S. Geological Survey's Water, Energy, and Biogeochemical Budgets program, hydrologic and geomorphologic processes and stream chemistry of four small watersheds in eastern Puerto Rico, which differ in geology and land cover, have been studied since 1991. Spatial and temporal characteristics of precipitation and stream discharge, along with water budgets, were determined for the watersheds for the period 1991 to 2005. The locations of the watersheds relative to the Luquillo Mountains and the range's associated rain shadow dominate hydrological processes, dwarfing influences of land cover. The influence of geology is reflected in recession characteristics of the rivers (recession is faster in soils overlying volcaniclastic bedrock) and in hillslope geomorphic processes (sediment is delivered at higher rates from soils overlying granitic bedrock).

Professional Paper

Recharge processes in an alluvial aquifer riparian zone, Norman Landfill, Norman, Oklahoma, 1998-2000

Analyses of stable isotope profiles (d2H and d18O) in the saturated zone, combined with water-table fluctuations, gave a comprehensive picture of recharge processes in an alluvial aquifer riparian zone. At the Norman Landfill U.S. Geological Survey Toxic Substances Hydrology research site in Norman, Oklahoma, recharge to the aquifer appears to drive biodegradation, contributing fresh supplies of electron acceptors for the attenuation of leachate compounds from the landfill. Quantifying recharge is a first step in studying this process in detail. Both chemical and physical methods were used to estimate recharge. Chemical methods included measuring the increase in recharge water in the saturated zone, as defined by isotopic signature, specific conductance or chloride measurements; and infiltration rate estimates using storm event isotopic signatures. Physical methods included measurement of water-table rise after individual rain events and on an approximately monthly time scale. Evapotranspiration rates were estimated using diurnal watertable fluctuations; outflux of water from the alluvial aquifer during the growing season had a large effect on net recharge at the site. Evaporation and methanogenesis gave unique isotopic signatures to different sources of water at the site, allowing the distinction of recharge using the offset of the isotopic signature from the local meteoric water line. The downward movement of water from large, isotopically depleted rain events in the saturated zone yielded recharge rate estimates (2.2 - 3.3 mm/day), and rates also were determined by observing changes in thickness of the layer of infiltrated recharge water at the top of the saturated zone (1.5 - 1.6 mm/day). Recharge measured over 2 years (1998-2000) in two locations at the site averaged 37 percent of rainfall, however, part of this water had only a short residence time in the aquifer. Isotopes showed recharge water entering the ground-water system in winter and spring, then being removed during the growing season by phreatophyte transpiration. Recharge timing was variable over the course of the study; July and August were the only months that had no recharge in both years. Recharge to the aquifer from the slough (wetland pond) was estimated at one location using the isotopic signature of water affected by evaporation. Recharge was correlated with the rainfall amount over the period of estimation, suggesting that recharge from the slough to the downgradient aquifer was an episodic process, corresponding to elevated water levels in the slough after large rain events.

Oklahoma

Suspended-sediment yields and stream-channel processes on Judy's Branch watershed in the St. Louis Metro East region in Illinois

Judy's Branch watershed, a small basin (8.64 square miles) in the St. Louis Metro East region in Illinois, was selected as a pilot site to determine suspended-sediment yields and stream-channel processes in the bluffs and American Bottoms (expansive low-lying valley floor in the region). Suspended-sediment and stream-chan-nel data collected and analyzed for Judy's Branch watershed are presented in this report to establish a baseline of data for water-resource managers to evaluate future stream rehabilitation and manage-ment alternatives. The sediment yield analysis determines the amount of sediment being delivered from the watershed and two subwatersheds: an urban tributary and an undeveloped headwater (pri-marily agricultural). The analysis of the subwater-sheds is used to compare the effects of urbanization on sediment yield to the river. The stream-channel contribution to sediment yield was determined by evaluation of the stream-channel processes operat-ing on the streambed and banks of Judy's Branch watershed. Bank stability was related to hydrologic events, bank stratigraphy, and channel geometry through model development and simulation. The average suspended-sediment yield from two upland subwatersheds (drainage areas of 0.23 and 0.40 sq.mi. was 1,163 tons per square mile per year (tons/sq.mi.-year) between July 2000 and June 2004. The suspended-sediment yield at the Route 157 station was 2,523 tons/sq.mi.-year, near the outlet of Judy's Branch watershed (drainage area = 8.33 sq.mi.). This is approximately 1,360 tons/sq.mi.-year greater than the average at the upland stations for the same time period. This result is unexpected in that, generally, the suspended-sediment yield decreases as the watershed area increases because of sediment stored in the channel and flood plain. The difference indicates a possible increase in yield from a source, such as bank retreat, and supports the concept that land-use changes increase stream-flows that may in turn result in higher rates of bank retreat. Utilizing both bank-rod data and resurveyed cross-section data, it was determined that approxi-mately half of the suspended- sediment yield at Route 157 during July 2000-June 2004 came from bank retreat. Given that bank retreat can be a substantial portion of the sediment yield, understanding bank stability processes is important. Bank stability can be assessed mathematically by computing the factor of safety, which is defined by the ratio of the shear strength (resisting force) along the failure surface and the shear stress (driving gravitational force). Once the factor of safety falls below one, the bank theoretically becomes unstable. Bank-stability conditions were related to hydrologic events, bank type, and channel geometry through model develop-ment and simulation. The most common type of bank in the watershed consists of cohesive alluvial soil deposits overlying a stiff glacial till. A stabil-ity chart for different bank types was developed using a bank-stability analysis. Banks steeper than 70 degrees and higher than from 10 to 11.5 feet (depending on bank type) become at risk for mass failure in the watershed under conditions that pro-mote saturation of the bank and a sudden drop in the river level.

Scientific Investigations Report

Phase II modification of the W ater A vailability T ool for E nvironmental R esources (WATER) for Kentucky: The sinkhole-drainage process, point-and-click basin delineation, and results of karst test-basin simulations

This report describes Phase II modifications made to the Water Availability Tool for Environmental Resources (WATER), which applies the process-based TOPMODEL approach to simulate or predict stream discharge in surface basins in the Commonwealth of Kentucky. The previous (Phase I) version of WATER did not provide a means of identifying sinkhole catchments or accounting for the effects of karst (internal) drainage in a TOPMODEL-simulated basin. In the Phase II version of WATER, sinkhole catchments are automatically identified and delineated as internally drained subbasins, and a modified TOPMODEL approach (called the sinkhole drainage process, or SDP-TOPMODEL) is applied that calculates mean daily discharges for the basin based on summed area-weighted contributions from sinkhole drain-age (SD) areas and non-karstic topographically drained (TD) areas. Results obtained using the SDP-TOPMODEL approach were evaluated for 12 karst test basins located in each of the major karst terrains in Kentucky. Visual comparison of simulated hydrographs and flow-duration curves, along with statistical measures applied to the simulated discharge data (bias, correlation, root mean square error, and Nash-Sutcliffe efficiency coefficients), indicate that the SDPOPMODEL approach provides acceptably accurate estimates of discharge for most flow conditions and typically provides more accurate simulation of stream discharge in karstic basins compared to the standard TOPMODEL approach. Additional programming modifications made to the Phase II version of WATER included implementation of a point-and-click graphical user interface (GUI), which fully automates the delineation of simulation-basin boundaries and improves the speed of input-data processing. The Phase II version of WATER enables the user to select a pour point anywhere on a stream reach of interest, and the program will automatically delineate all upstream areas that contribute drainage to that point. This capability enables automatic delineation of a simulation basin of any size (area) and having any level of stream-network complexity. WATER then automatically identifies the presence of sinkholes catchments within the simulation basin boundaries; extracts and compiles the necessary climatic, topographic, and basin characteristics datasets; and runs the SDP-TOPMODEL approach to estimate daily mean discharges (streamflow).

Kentucky

Groundwater management process simulations using an updated version of the three-dimensional numerical model of groundwater flow in northern Utah Valley, Utah County, Utah

Groundwater is a primary source of drinking water in northern Utah County. The groundwater system is recharged mainly from precipitation in the adjacent Wasatch Mountains and infiltration of streamflow. In 2004, groundwater withdrawals were estimated to be roughly 44,500 acre-feet per year. In 2016, groundwater withdrawals were estimated to be greater than 63,400 acre-feet per year. To prepare for anticipated future increases in groundwater withdrawals, local cities identified 16 locations as feasible for managed aquifer recharge. Using an updated version of an existing U.S. Geological Survey groundwater flow model of northern Utah County, the Groundwater-Management Process for MODFLOW-2005 was used to investigate optimal managed aquifer recharge scenarios with the objective of maintaining acceptable reductions in simulated discharge at 12 groundwater discharge areas and flowing wells along Utah Lake. The Groundwater-Management Process is applied to a 50-year (2017–66) projection of groundwater conditions using average recharge conditions and a linear increase of approximately 750 acre-feet per year of municipal groundwater withdrawals. Two sets of discharge constraints were applied. The first scenario constrains discharge to greater than or equal to 80 percent of the 2016 simulated groundwater discharge along Utah Lake. The constraint was met with a total managed aquifer recharge rate of roughly 7,300 acre-feet per year during 2042–56, and 15,600 acre-feet per year during 2057–66. A second scenario constrains discharge to greater than or equal to 90 percent of the 2016 simulated discharge. This constraint can only be met at 8 of the 12 discharge areas along Utah Lake. This required a managed aquifer recharge rate of roughly 10,000 acre-feet per year during 2042–56 and 15,400 acre-feet per year during 2057–66. For both scenarios, the Groundwater-Management Process indicated that all managed aquifer recharge sites need to be used to meet discharges constraints. The discharge constraints were informally defined on the basis of the water rights hierarchy associated with Utah Lake.

Utah

Interaction of a legacy groundwater contaminant plume with the Little Wind River from 2015 through 2017, Riverton Processing site, Wyoming

The Riverton Processing site was a uranium mill 4 kilometers southwest of Riverton, Wyoming, that prepared uranium ore for nuclear reactors and weapons from 1958 to 1963. The U.S. Department of Energy completed surface remediation of the uranium tailings in 1989; however, groundwater below and downgradient from the tailings site and nearby Little Wind River was not remediated. Beginning in 2010, a series of floods along the Little Wind River began to mobilize contaminants in the unsaturated zone, resulting in substantial increases of uranium and other contaminants of concern in monitoring wells completed inside the contaminant plume. In 2011, the U.S. Department of Energy started a series of university and Government agency retrospective and field investigations to understand the processes controlling contaminant increases in the groundwater plume. The goals of the field investigations described in this report were to (1) identify and quantify the contaminant flux and potential associated biological effects from groundwater associated with the legacy plume as it enters a perennial stream reach, and (2) assess chemical exposure and potential effects to biological receptors from the interaction of the contaminant plume and the river. Field investigations along the Little Wind River were completed by the U.S. Geological Survey during 2015–17 in cooperation with the U.S. Department of Energy Office of Legacy Management to characterize: (1) seepage areas and seepage rates; (2) pore-water and bed sediment chemistry and hyporheic exchange and reactive loss; and (3) exposure pathways and biological receptors. All data collected during the study are contained in two U.S. Geological Survey data releases, available at https://doi.org/10.5066/F7BR8QX4 and https://doi.org/10.5066/P9J9VJBR . A variety of tools and methods were used during the field characterizations. Streambed temperature mapping, electrical resistivity tomography, electromagnetic induction, fiber-optic distributed temperature sensing, tube seepage meters, vertical thermal sensor arrays, and an environmental tracer (radon) were used to identify areas of groundwater seepage and associated seepage rates along specific sections of the study reach of the river. Drive points, minipiezometers, diffusive equilibrium in thin-film/diffusive gradients in thin-film probes, bed-sediment samples, and equal discharge increment sampling methods were used to characterize pore-water chemistry, estimate hyporheic exchange and reactive loss of selected chemical constituents, and quantify contaminant loadings entering the study reach. Sampling and analysis of surface sediments, filamentous algae, periphytic algae, and macroinvertebrates were used to characterize biological exposure pathways, metal uptake, and receptors. Areas of focused groundwater discharge identified by the fiber-optic distributed temperature sensing surveys corresponded closely with areas of elevated electrical conductivity identified by the electromagnetic induction survey results in the top 5 meters of sediment. During three monitoring periods in 2016, the mean vertical seepage rate measured with tube seepage meters was 0.45 meter per day, ranging from −0.02 to 1.55 meters per day. Five of the 11 locations where vertical thermal profile data were collected along the study reach during August 2017 indicated mean upwelling values ranging from 0.11 to 0.23 meter per day. Radon data collected from the Little Wind River during June, July, and August 2016 indicated a consistent inflow of groundwater to the central part of the study reach, in the area congruous with the center of the previously mapped groundwater plume discharge zone. During August 2017, the greatest attenuation of uranium from reactive loss in pore-water samples was observed at three locations along the study reach, at depths between 6 and 15 centimeters, and similar trends in molybdenum attenuation were also observed. Bed-sediment concentration profiles collected during 2017 also indicated attenuation of uranium and molybdenum from groundwater during hyporheic mixing of surface water with the legacy plume during groundwater upwelling into the river. Streamflow measurements combined with equal discharge increment water sampling along the study reach indicated an increase in dissolved uranium concentrations in the downstream direction during 2016 and 2017. Net uranium load entering the Little Wind River study reach was about 290 and 435 grams per day during 2016 and 2017, respectively. Biological samples indicated that low levels of uranium and molybdenum exposure were confined to the benthos in the Little Wind River within and immediately downstream from the perimeter of the groundwater plume. Concentrations of molybdenum and uranium in filamentous algae were consistently low at all sites in the study reach with no indication of increased exposure of dissolved bioavailable molybdenum or uranium at sites next to or downstream from the groundwater plume. Comparison of the August 2017 results from electromagnetic induction, tube seepage meters, vertical thermal profiling, and pore-water chemistry surveys were in general agreement in identifying areas with upwelling groundwater conditions along the study reach. However, the electroconductivity values measured with electromagnetic induction in the top 100 centimeters of sediment did not agree with sodium concentrations measured in pore-water samples collected at similar streambed depths. Differences and similarities between multiple methods can result in additional insights into hydrologic and biogeochemical processes that may be occurring along a reach of a river system interacting with shallow groundwater inputs. It may be advantageous to apply a variety of geophysical, geochemical, hydrologic, and biological tools at other Uranium Mill Tailings Remedial Action ( https://www.energy.gov/sites/prod/files/2014/10/f19/UMTRCA.pdf ) sites during the investigation of legacy contaminant plume interactions with surface-water systems.

Wyoming

Characterization of the hydrogeologic framework, groundwater-flow system, geochemistry, and aquifer hydraulic properties of the shallow groundwater system in the Wilcox and Lorraine process areas of the Wilcox Oil Company Superfund site near Bristow, Oklahoma, 2022

The Wilcox Oil Company Superfund site (hereinafter referred to as “the site”) was formerly an oil refinery northeast of Bristow in Creek County, Oklahoma. Historical refinery operations contaminated the soil, surface water, streambed sediments, alluvium, and groundwater with refined and stored products at the site. The Wilcox and Lorraine process areas are where the highest concentrations of volatile organic compounds, semivolatile organic compounds, polycyclic aromatic hydrocarbons, and trace elements (including metals) (collectively hereinafter referred to as “contaminants”) were measured in a local shallow perched groundwater system within the alluvium (hereinafter referred to as the “alluvial aquifer”) at the site during previous site assessments. In order to understand the potential migration of contaminants through the soil and groundwater in these areas, the U.S. Geological Survey, in cooperation with the U.S. Environmental Protection Agency, investigated aquifer characteristics of the alluvial aquifer in the Wilcox and Lorraine process areas of the site to (1) document hydraulic conductivity and other aquifer characteristics of the alluvial aquifer that govern contaminant fate and transport, (2) describe the geospatial extent and concentration of the contaminants in the alluvial aquifer in the Wilcox and Lorraine process areas, and (3) describe the geochemical controls pertaining to oxidation and reduction governing the fate and transport and the degradation potential of contaminants in the groundwater. Various data were compiled and collected to evaluate the aquifer characteristics at the site including the hydrogeologic framework, groundwater-flow system, geochemistry, and hydraulic properties of the aquifer. A total of 20 new (2022) groundwater monitoring wells were installed at the site to collect data used to supplement groundwater-level altitude and groundwater-quality data collected from older, existing groundwater monitoring wells and piezometers. Data compiled and collected for the study were used to evaluate the characteristics of the alluvial aquifer at the site. These aquifer characteristics are defined by the hydrogeologic framework, groundwater-flow system, geochemistry, and hydraulic properties of the aquifer.

Oklahoma

Use of multi-node wells in the Groundwater-Management Process of MODFLOW-2005 (GWM-2005)

Many groundwater wells are open to multiple aquifers or to multiple intervals within a single aquifer. These types of wells can be represented in numerical simulations of groundwater flow by use of the Multi-Node Well (MNW) Packages developed for the U.S. Geological Survey’s MODFLOW model. However, previous versions of the Groundwater-Management (GWM) Process for MODFLOW did not allow the use of multi-node wells in groundwater-management formulations. This report describes modifications to the MODFLOW–2005 version of the GWM Process (GWM–2005) to provide for such use with the MNW2 Package. Multi-node wells can be incorporated into a management formulation as flow-rate decision variables for which optimal withdrawal or injection rates will be determined as part of the GWM–2005 solution process. In addition, the heads within multi-node wells can be used as head-type state variables, and, in that capacity, be included in the objective function or constraint set of a management formulation. Simple head bounds also can be defined to constrain water levels at multi-node wells. The report provides instructions for including multi-node wells in the GWM–2005 data-input files and a sample problem that demonstrates use of multi-node wells in a typical groundwater-management problem.

Techniques and Methods

Processes affecting the trihalomethane concentrations associated with the third injection, storage, and recovery rest at Lancaster, Antelope Valley, California, March 1998 through April 1999

The formation and fate of trihalomethanes (THM) during the third injection, storage, and recovery test at Lancaster, Antelope Valley, California, were investigated as part of a program to assess the long-term feasibility of using injection, storage, and recovery as a water-supply method and as a way to reduce water-level declines and land-subsidence in the Antelope Valley. The program was conducted by the U.S. Geological Survey in cooperation with the Los Angeles County Department of Public Works and the Antelope Valley-East Kern Water Agency. The water used for injection, storage, and recovery must be disinfected before injection and thus contains THMs and other disinfection by-products. THMs (chloroform, CHCl3, bromodichloromethane, CHCl2Br, dibromochloromethane, CHClBr2, and bromoform, CHBr3) are formed by reaction between natural dissolved organic carbon that is present in water and chlorine that is added during the disinfection step of the drinking water treatment process. THMs are carcinogenic compounds, and their concentrations in drinking water are regulated by the U.S. Environmental Protection Agency. During previous cycles of the Lancaster program, extracted water still contained measurable concentrations of THMs long after continuous pumping had extracted a greater volume of water than had been injected. This raised concerns about the potential long-term effect of injection, storage, and recovery cycles on ground-water quality in Antelope Valley aquifers. The primary objectives of this investigation were to determine (1) what controlled continued THM formation in the aquifer after injection, (2) what caused of the persistence of THMs in the extracted water, even after long periods of pumping, (3) what controlled the decrease of THM concentrations during the extraction period, and (4) the potential for natural attenuation of THMs in the aquifer. Laboratory experiments on biodegradation of THMs in microcosms of aquifer materials indicate that aquifer bacteria did not degrade CHCl3 or CHBr3 under aerobic conditions, but did degrade CHBr3 under anaerobic conditions. However, the aquifer is naturally aerobic and CHCl3 is the dominant THM species; therefore, biodegradation is not considered an important attenuation mechanism for THMs in this aquifer. The alluvial-fan sediments comprising the aquifer have very low contents of organic matter; therefore, sorption is not considered to be an important attenuation mechanism for THMs in this aquifer. Laboratory experiments on formation of THMs in the injection water indicate that continued THM formation in the injection water after injection into the aquifer was limited by the amount of residual chlorine in the injection water at the time of injection. After accounting for THMs formed by reaction of this residual chlorine, THMs behaved as conservative constituents in the aquifer, and the only process affecting the concentration of THMs was mixing of the injection water and the ground water. The mixing process was quantified using mass balances of injected constituents, the sulfur hexafluoride (SF6) tracer that was added to the injected water, and a simple descriptive mathematical mixing model. Mass balance calculations show that only 67 percent of the injected THMs and chloride were recovered by the time that a volume of water equivalent to 132 percent of the injection water volume was extracted. Pumping 250 percent of the injection water volume only increased recovery of injected THMs to 80 percent. THM and SF6 concentrations in the extracted water decreased concomitantly during the extraction period, and THM concentrations predicted from SF6 concentrations closely matched the measured THM concentrations. Because SF6 is a conservative tracer that was initially only present in the injection water, parallel decreases in SF6 and THM concentrations in the extracted water must be due to dilution of injection water with ground water. The simple descriptive mixing mode

Water-Resources Investigations Report

Satellite relay and processing of hydrologic data in south Florida

Management of water in south Florida requires current hydrologic data on water levels and rainfall. This need is being met by a data processing system which provides near-real-time data from remote areas. The flow of data is from data-collection platforms at field sites via LANDSAT-1 satellite to the National Aeronautics and Space Administration's (NASA) ground-receiving stations to the NASA Data Processing Facility at Goddard Space Flight Center to the Miami office of the U.S. Geological Survey to data users. The process requires only a few hours, and current data are provided to water-management agencies in several different forms. The system has proven to be dependable.

Florida

Water quality and processes affecting dissolved oxygen concentrations in the Blackwater River, Canaan Valley, West Virginia

The water quality and environmental processes affecting dissolved oxygen were determined for the Blackwater River in Canaan Valley, West Virginia. Canaan Valley is oval-shaped (14 miles by 5 miles) and is located in the Allegheny Mountains at an average elevation of 3,200 feet above sea level. Tourism, population, and real estate development have increased in the past two decades. Most streams in Canaan Valley are a dilute calcium magnesium bicarbonate-type water. Streamwater typicaly was soft and low in alkalinity and dissolved solids. Maximum values for specific conductance, hardness, alkalinity, and dissolved solids occurred during low-flow periods when streamflow was at or near baseflow. Dissolved oxygen concentrations are most sensitive to processes affecting the rate of reaeration. The reaeration is affected by solubility (atmospheric pressure, water temperature, humidity, and cloud cover) and processes that determine stream turbulence (stream depth, width, velocity, and roughness). In the headwaters, photosynthetic dissolved oxygen production by benthic algae can result in supersaturated dissolved oxygen concentrations. In beaver pools, dissolved oxygen consumption from sediment oxygen demand and carbonaceous biochemical oxygen demand can result in dissolved oxygen deficits.

Water-Resources Investigations Report