Search USGS⌕ Search

SEARCH · Search USGS

Results for “Current Biology”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 325 records · Page 18Linked to original sources
USGS2007

Science Review for the Scott Bar Salamander (Plethodon asupak) and the Siskiyou Mountains Salamander (P. stormi): Biology, Taxonomy, Habitat, and Detection Probabilities/Occupancy

The Plethodon elongatus Complex in the Klamath-Siskiyou Ecoregion of southern Oregon and northern California includes three species: the Del Norte salamander, Plethodon elongatus; the Siskiyou Mountains salamander, P. stormi; and the Scott Bar salamander, P. asupak. This review aims to summarize the current literature and information available on select topics for P. stormi and P. asupak. These are both terrestrial salamanders belonging to the Family Plethodontidae, which contains more species and has a wider geographic distribution than any other family of salamanders (Wake 1966, 2006; Pough 1989). The genera of this family have greatly diversified ecologically across North America, Central America, northern South America, Sardinia, southeastern France and northwestern Italy, and have recently been discovered on the Korean peninsula (Min et al. 2005). The genus Plethodon is found exclusively in North America and is split into three distinct clades, based upon morphology and phylogenetics (Highton and Larson 1979): eastern small Plethodon, eastern large Plethodon, and the western Plethodon. The western Plethodon are the greatest representation of Plethodontidae in the Pacific Northwest, with 8 species. The two species with the most restricted ranges of these regional congeners are the Siskiyou Mountains and Scott Bar salamanders. These salamanders occupy the interior of the Klamath-Siskiyou Ecoregion which straddles the California and Oregon state lines, between Siskiyou County (CA) and Jackson and Josephine Counties (OR). The relatively recent discovery of P. asupak (Mead et al. 2005) and the limited range of both species have created an environment of uncertain conservation status for these species. This review will focus on four central topics of concern for land and resource managers: Biology; Taxonomy; Habitat; and Detection Probabilities/Occupancy.

Open-File Report↗
USGS2011

Effects of grade control structures on fish passage, biological assemblages, and hydraulic environments in western Iowa streams: a multidisciplinary review

Land use changes and channelization of streams in the deep loess region of western Iowa have led to stream channel incision, altered flow regimes, increased sediment inputs, decreased habitat diversity and reduced lateral connectivity of streams and floodplains. Grade control structures (GCSs) are built in streams to prevent further erosion, protect infrastructure and reduce sediment loads. However, GCS can have a detrimental impact on fisheries and biological communities. We review three complementary biological and hydraulic studies on the effects of GCS in these streams. GCS with steep (≥1:4 rise : run) downstream slopes severely limited fish passage, but GCS with gentle slopes (≤1:15) allowed greater passage. Fish assemblages were dominated by species tolerant of degradation, and Index of Biotic Integrity (IBI) scores were indicative of fair or poor biotic integrity. More than 50% of fish species had truncated distributions. After modification of GCS to reduce slopes and permit increased passage, IBI scores increased and several species were detected further upstream than before modification. Total macroinvertebrate density, biomass and taxonomic diversity and abundance of ecologically sensitive taxa were greater at GCS than in reaches immediately upstream, downstream or ≥1 km from GCS. A hydraulic study confirmed results from fish passage studies; minimum depths and maximum current velocities at GCS with gentle slopes (≤1:15) were more likely to meet minimum criteria for catfish passage than GCS with steeper slopes. Multidisciplinary approaches such as ours will increase understanding of GCS-associated factors influencing fish passage, biological assemblage structure and other ecological relationships in streams.

Iowa↗
USGS1985

Temporal dynamics of estuarine phytoplankton: A case study of San Francisco Bay

Detailed surveys throughout San Francisco Bay over an annual cycle (1980) show that seasonal variations of phytoplankton biomass, community composition, and productivity can differ markedly among estuarine habitat types. For example, in the river-dominated northern reach (Suisun Bay) phytoplankton seasonality is characterized by a prolonged summer bloom of netplanktonic diatoms that results from the accumulation of suspended particulates at the convergence of nontidal currents (i.e. where residence time is long). Here turbidity is persistently high such that phytoplankton growth and productivity are severely limited by light availability, the phytoplankton population turns over slowly, and biological processes appear to be less important mechanisms of temporal change than physical processes associated with freshwater inflow and turbulent mixing. The South Bay, in contrast, is a lagoon-type estuary less directly coupled to the influence of river discharge. Residence time is long (months) in this estuary, turbidity is lower and estimated rates of population growth are high (up to 1-2 doublings d-1), but the rapid production of phytoplankton biomass is presumably balanced by grazing losses to benthic herbivores. Exceptions occur for brief intervals (days to weeks) during spring when the water column stratifies so that algae retained in the surface layer are uncoupled from benthic grazing, and phytoplankton blooms develop. The degree of stratification varies over the neap-spring tidal cycle, so the South Bay represents an estuary where (1) biological processes (growth, grazing) and a physical process (vertical mixing) interact to cause temporal variability of phytoplankton biomass, and (2) temporal variability is highly dynamic because of the short-term variability of tides. Other mechanisms of temporal variability in estuarine phytoplankton include: zooplankton grazing, exchanges of microalgae between the sediment and water column, and horizontal dispersion which transports phytoplankton from regions of high productivity (shallows) to regions of low productivity (deep channels). Multi-year records of phytoplankton biomass show that large deviations from the typical annual cycles observed in 1980 can occur, and that interannual variability is driven by variability of annual precipitation and river discharge. Here, too, the nature of this variability differs among estuary types. Blooms occur only in the northern reach when river discharge falls within a narrow range, and the summer biomass increase was absent during years of extreme drought (1977) or years of exceptionally high discharge (1982). In South Bay, however, there is a direct relationship between phytoplankton biomass and river discharge. As discharge increases so does the buoyancy input required for density stratification, and wet years are characterized by persistent and intense spring blooms. ?? 1985 Dr W. Junk Publishers.

Hydrobiologia↗
USGS2024

Climate change amplifies ongoing declines in sagebrush ecological integrity

Understanding how climate change will contribute to ongoing declines in sagebrush ecological integrity is critical for informing natural resource management, yet complicated by interactions with wildfire and biological invasions. Here, we assessed potential future changes in sagebrush ecological integrity under a range of scenarios using an individual plant-based simulation model, integrated with remotely sensed estimates of current sagebrush ecological integrity. The simulation model allowed us to estimate how climate change, wildfire, and invasive annuals interact to alter the potential abundance of key plant functional types that influence sagebrush ecological integrity: sagebrush, perennial grasses, and annual grasses. Our results suggest that climate driven reductions in sagebrush ecological integrity may occur over broader areas than increases in sagebrush ecological integrity. Declines in sagebrush ecological integrity were most likely in hot and dry regions while increases were more likely in cool and wet regions. Increases in wildfire probability, largely driven by increasing invasive annual grass abundance, resulted in projected declines in sagebrush abundance and sagebrush ecological integrity in some regions, particularly the Great Basin. The most common projected transitions in sagebrush habitat classification were declines from Core Sagebrush Area to Growth Opportunity Area and from Growth Opportunity Area to Other Rangeland Area. Responses varied considerably across projections from different global climate models, highlighting the importance of climate uncertainty. However, our projections tended to be robust in areas that currently have the highest sagebrush ecological integrity. Our results provide a long-term perspective on the vulnerability of sagebrush ecosystems to climate change and may inform geographic prioritization of conservation and restoration investments. These results suggest that ongoing threats, such as the continued invasion by annual grasses and increased wildfire frequency, are likely to be amplified by climate change, and imply that the current imbalance between capacity for conservation to address threats to sagebrush will grow as the climate warms.

Rangeland Ecology and Management↗
USGS2025

Ecological acclimation: A framework to integrate fast and slow responses to climate change

Ecological responses to climate change occur across vastly different time-scales, from minutes for physiological plasticity to decades or centuries for community turnover and evolutionary adaptation. Accurately predicting the range of ecosystem trajectories will require models that incorporate both fast processes that may keep pace with climate change and slower ones likely to lag behind and generate disequilibrium dynamics. However, the knowledge necessary for this integration is currently fragmented across disciplines. We develop ‘ecological acclimation’ as a unifying framework to emphasize the similarity of dynamics driven by processes operating on dramatically different time-scales and levels of biological organization. The framework focuses on ecoclimate sensitivities, measured as the change in an ecological response variable per unit of climate change. Acclimation processes acting at different time-scales cause these sensitivities to shift in magnitude and even direction over time. We highlight shifting ecoclimate sensitivities in case studies from diverse ecosystems, including terrestrial plant communities, coral reefs and soil microbiomes. Models predicting future ecosystem states inevitably make assumptions about acclimation processes; these assumptions must be explicit for users to evaluate whether a model is appropriate for a given forecast horizon. Similarly, decision frameworks that clearly account for multiple acclimation processes and their distinct time-scales will help natural resource managers plan for ecological impacts of climate change from years to many decades into the future. We outline a synthetic research programme focused on the time-scales of ecological acclimation to reduce uncertainty in ecological forecasts.

Functional Ecology↗
USGS2000

Map of Distribution of Bottom Sediments on the Continental Shelf, Gulf of Alaska

Introduction The U.S. Geological Survey has a long history of exploring marine geology in the Gulf of Alaska. As part of a cooperative program with other federal and state agencies, the USGS is investigating the relations between ocean-floor geology and benthic marine biohabitats. This bottom sediment map, compiled from published literature will help marine biologists develop an understanding of sea-floor geology in relation to various biological habitats. The pattern of sea-floor sedimentation and bottom morphology in the Gulf of Alaska reflects a complex interplay of regional tectonism, glacial advances and retreats, oceanic and tidal currents, waves, storms, eustatic change, and gravity-driven processes. This map, based on numerous cruises during the period of 1970-1996, shows distribution of bottom sediments in areas of study on the continental shelf. The samples were collected with piston, box, and gravity corers, and grab samplers. The interpretations of sediment distribution are the products of sediment size analyses combined with interpretations of high-resolution seismic reflection profiles. The sea floor was separated into several areas as follows: Cook Inlet -- Hazards studies in this embayment emphasized sediment distribution, sediment dynamics, bedforms, shallow faults, and seafloor stability. Migrating mega-sandwaves, driven by strong tidal currents, influence seabed habitats and stability of the seafloor, especially near pipelines and drilling platforms. The coarseness of the bottom sediment reinforces the influence of the strong tidal currents on the seafloor habitats. Kodiak Shelf -- Tectonic framework studies demonstrate the development of an accretionary wedge as the Pacific Plate underthrusts the Alaskan landmass. Seismic data across the accretionary wedge reveal anomalies indicative of fluid/gas vent sites in this segment of the continental margin. Geologic hazards research shows that movement along numerous shallow faults poses a risk to sea floor structures. Sea-floor sediment on shallow banks is eroded by seasonal wave-generated currents. The winnowing action of the large storm waves results in concentrations of gravel over broad segments of the Kodiak shelf. Northeastern Gulf of Alaska -- Tectonic framework studies demonstrate that rocks of distant origin (Yakutat terrane) are currently attached to and moving with the Pacific Plate, as it collides with and is subducted beneath southern Alaska. This collision process has led to pronounced structural deformation of the continental margin and adjacent southern Alaska. Consequences include rapidly rising mountains and high fluvial and glacial sedimentation rates on the adjacent margin and ocean floor. The northeastern Gulf of Alaska shelf also has concentrations of winnowed (lag) gravel on Tarr Bank and on the outer shelf southeast of Yakutat Bay. Between Kayak Island and Yakutat Bay the outer shelf consists of pebbly mud (diamict). This diamict is a product of glacial marine sedimentation during the Pleistocene and is present today as a relict sediment. A prograding wedge of Holocene sediment consisting of nearshore sand grading seaward into clayey silt and silty clay covers the relict pebbly mud to mid-shelf and beyond. Shelf and slope channel systems transport glacially derived sediment across the continental margin into Surveyor Channel, an abyssal fan and channel system that reaches over 1,000 km to the Aleutian Trench.

Miscellaneous Field Studies Map↗
USGS2005

Toxic Alexandrium blooms in the western Gulf of Maine: The plume advection hypothesis revisited

The plume advection hypothesis links blooms of the toxic dinoflagellate Alexandrium fundyense in the western Gulf of Maine (GOM) to a buoyant plume derived from river outflows. This hypothesis was examined with cruise and moored-instrument observations in 1993 when levels of paralytic shellfish poisoning (PSP) toxins were high, and in 1994 when toxicity was low. A coupled physical-biological model simulated hydrography and A. fundyense distributions. Initial A. fundyense populations were restricted to low-salinity nearshore waters near Casco Bay, but also occurred in higher salinity waters along the plume boundary. This suggests two sources of cells - those from shallow-water cyst populations and those transported to shore from offshore blooms in the eastern segment of the Maine coastal current (EMCC). Observations confirm the role of the plume in A. fundyense transport and growth. Downwelling-favorable winds in 1993 transported the plume and its cells rapidly alongshore, enhancing toxicity and propagating PSP to the south. In 1994, sustained upwelling moved the plume offshore, resulting in low toxicity in intertidal shellfish. A. fundyense blooms were likely nutrient limited, leading to low growth rates and moderate cell abundances. These observations and mechanisms were reproduced by coupled physical-biological model simulations. The plume advection hypothesis provides a viable explanation for outbreaks of PSP in the western GOM, but should be refined to include two sources for cells that populate the plume and two major pathways for transport: one within the low-salinity plume and another where A. fundyense cells originating in the EMCC are transported along the outer boundary of the plume front with the western segment of the Maine coastal current.

Casco Bay, Gulf of Maine↗
USGS2004

Maps showing estimated sediment yield from coastal landslides and active slope distribution along the Big Sur coast, Monterey and San Luis Obispo Counties, California

The 1982-83 and 1997-98 El Ni?os brought very high precipitation to California?s central coast; this precipitation resulted in raised groundwater levels, coastal flooding, and destabilized slopes throughout the region. Large landslides in the coastal mountains of Big Sur in Monterey and San Luis Obispo Counties blocked sections of California State Route 1, closing the road for months at a time. Large landslides such as these occur frequently in the winter months along the Big Sur coast due to the steep topography and weak bedrock. A large landslide in 1983 resulted in the closure of Highway 1 for over a year to repair the road and stabilize the slope. Resulting work from the 1983 landslide cost over $7 million and generated 30 million cubic yards of debris from landslide removal and excavations to re-establish the highway along the Big Sur coast. Before establishment of the Monterey Bay National Marine Sanctuary (MBNMS) in 1992, typical road opening measures involved disposal of some landslide material and excess material generated from slope stabilization onto the seaward side of the highway. It is likely that some or most of this disposed material, either directly or indirectly through subsequent erosion, was eventually transported downslope into the ocean. In addition to the landslides that initiate above the road, natural slope failures sometimes occur on the steep slopes below the road and thus deliver material to the base of the coastal mountains where it is eroded and dispersed by waves and nearshore currents. Any coastal-slope landslide, generated through natural or anthropogenic processes, can result in sediment entering the nearshore zone. The waters offshore of the Big Sur coast are part of the MBNMS. Since it was established in 1992, landslide-disposal practices came under question for two reasons. The U.S. Code of Federal Regulations, Title 15, Section 922.132 prohibits discharging or depositing, from beyond the boundary of the Sanctuary, any material or other matter that subsequently enters the Sanctuary and injures a Sanctuary resource or quality. The landslide-disposal practices previously used had the potential to alter nearshore zone habitat by converting marine habitats from rocky substrate to soft bottom. In addition, the disposal practices had the potential to increase concentrations of suspended sediment in the nearshore zone, and thereby possibly impact coastal biological communities. On the other hand, natural mass-wasting processes, including coastal cliff erosion coastal and landslides, as well as streams deliver sediment to the coast in unknown quantities and thus provide nutrients as well as source material for beaches. Current road maintenance and repair practices along the Coast Highway 1 corridor that restrict disposal of material within the MBNMS may actually reduce sediment input relative to natural processes.

Scientific Investigations Map↗
USGS1993

Effects of habitat availability on dispersion of a stream cyprinid

We analyzed temporal changes in the dispersion of the rosyside dace, Clinostomus funduloides , (family Cyprinidae) in a headwater stream, to assess the role of habitat availability in promoting fish aggregation. The dace foraged alone and in groups of up to about 25 individuals, and dispersion varied significantly among monthly censuses conducted from May through December. In two of three study pools, dace aggregated during July, October and/or December, but spread out during other months, especially during September when dispersion did not differ significantly from random. Dispersion was not significantly correlated with the total amount of suitable habitat available to foraging dace, but during summer, corresponded to the availability of depositional areas adjacent to rapid currents. Foragers aggregated in eddies or depositional areas during high stream discharge in July, and shifted out of depositional areas when current velocities declined from July to September. During late autumn, however, aggregations formed independently of changes in habitat conditions, and dace dispersion did not vary significantly among months in a third pool. The study suggests that dace dispersion cannot be predicted from the overall availability of suitable habitat as estimated from point measurements of depth and velocity; both the occurrence of a specific habitat feature (i.e., eddies adjacent to high velocity currents) and seasonal differences in behavior more strongly influenced the spatial distribution of foragers.

Environmental Biology of Fishes↗
USGS2013

Distribution of biologic, anthropogenic, and volcanic constituents as a proxy for sediment transport in the San Francisco Bay Coastal System

Although conventional sediment parameters (mean grain size, sorting, and skewness) and provenance have typically been used to infer sediment transport pathways, most freshwater, brackish, and marine environments are also characterized by abundant sediment constituents of biological, and possibly anthropogenic and volcanic, origin that can provide additional insight into local sedimentary processes. The biota will be spatially distributed according to its response to environmental parameters such as water temperature, salinity, dissolved oxygen, organic carbon content, grain size, and intensity of currents and tidal flow, whereas the presence of anthropogenic and volcanic constituents will reflect proximity to source areas and whether they are fluvially- or aerially-transported. Because each of these constituents have a unique environmental signature, they are a more precise proxy for that source area than the conventional sedimentary process indicators. This San Francisco Bay Coastal System study demonstrates that by applying a multi-proxy approach, the primary sites of sediment transport can be identified. Many of these sites are far from where the constituents originated, showing that sediment transport is widespread in the region. Although not often used, identifying and interpreting the distribution of naturally-occurring and allochthonous biologic, anthropogenic, and volcanic sediment constituents is a powerful tool to aid in the investigation of sediment transport pathways in other coastal systems.

California↗
USGS2016

Estuary-ocean connectivity: Fast physics, slow biology

Estuaries are connected to both land and ocean so their physical, chemical, and biological dynamics are influenced by climate patterns over watersheds and ocean basins. We explored climate-driven oceanic variability as a source of estuarine variability by comparing monthly time series of temperature and chlorophyll- a inside San Francisco Bay with those in adjacent shelf waters of the California Current System (CCS) that are strongly responsive to wind-driven upwelling. Monthly temperature fluctuations inside and outside the Bay were synchronous, but their correlations weakened with distance from the ocean. These results illustrate how variability of coastal water temperature (and associated properties such as nitrate and oxygen) propagates into estuaries through fast water exchanges that dissipate along the estuary. Unexpectedly, there was no correlation between monthly chlorophyll- a variability inside and outside the Bay. However, at the annual scale Bay chlorophyll- a was significantly correlated with the Spring Transition Index (STI) that sets biological production supporting fish recruitment in the CCS. Wind forcing of the CCS shifted in the late 1990s when the STI advanced 40 days. This shift was followed, with lags of 1–3 years, by 3- to 19-fold increased abundances of five ocean-produced demersal fish and crustaceans and 2.5-fold increase of summer chlorophyll- a in the Bay. These changes reflect a slow biological process of estuary–ocean connectivity operating through the immigration of fish and crustaceans that prey on bivalves, reduce their grazing pressure, and allow phytoplankton biomass to build. We identified clear signals of climate-mediated oceanic variability in this estuary and discovered that the response patterns vary with the process of connectivity and the timescale of ocean variability. This result has important implications for managing nutrient inputs to estuaries connected to upwelling systems, and for assessing their responses to changing patterns of upwelling timing and intensity as the planet continues to warm.

California↗
USGS2018

Twenty-nine years of population dynamics in a small-bodied montane amphibian

Identifying population declines before they reach crisis proportions is imperative given the current global decline in vertebrate fauna and associated challenges and expense of recovery. Understanding life histories and how the environment influences demography are critical aspects of this challenge, as is determining the biological relevance of covariates that are best supported by the data. We used 29 yr of data on chorus frogs at two sites to estimate demographic parameters, examine life history, assess weather‐related covariates, and determine the magnitude of process variation in target parameters. Average estimates of survival probabilities were 0.51 (Standard Error [SE] = 0.04) and 0.43 (SE = 0.04), and average estimates of recruitment probabilities were 0.64 (SE = 0.07) and 0.44 (SE = 0.04). Process variation accounted for ≥76% of the total temporal variation in both parameters at one pond and in survival probability alone at the other, suggesting that the covariates in our top models were explaining predominantly process rather than sampling variation. Estimates of population growth rates indicated a declining population at one pond (i.e., negative population growth rates in 15 of 18 yr), and comparisons with historical estimates suggested declines in survival probability at the other. The amount of deviance explained was low, providing little support for the influence of covariates on target parameters, despite model selection support. Synthesis and applications: This analysis illustrates the value of disentangling components of variance when assessing demographic drivers and highlights the need for adequate demographic information in assigning conservation labels.

Ecosphere↗
USGS2020

Introduction to life cycles, taxonomy, distribution and basic research techniques

Avian haemosporidian parasites are a closely related group of apicomplexan parasites with important similarities in their life cycles, development, physiology, and reproduction. Current phylogenies based on mitochondrial and nuclear genes reflect more traditional attempts to classify these organisms based on life history characteristics and morphology, but limited sampling from poorly characterized taxa such as the Garniidae from tropical and subtropical regions continues to limit our understanding of their phylogeny and evolution. Recent advances in molecular diagnostics and the ability to barcode these parasites using mitochondrial cytochrome b sequences have revolutionized the field, but traditional methodology based on microscopy of Giemsa-stained blood smears remains essential for diagnostics and understanding life history characteristics and biodiversity of these organisms. The relative strengths and weaknesses of current methods in wildlife haemosporidian research are discussed. We call for a combination of microscopic, PCR-based, and serological diagnostic methodologies for better estimates of true distribution and other aspects of biology of haemosporidians, particularly in studies on virulence, prevalence, and biodiversity.

Book chapter↗
USGS2015

Targeting climate diversity in conservation planning to build resilience to climate change

Climate change is raising challenging concerns for systematic conservation planning. Are methods based on the current spatial patterns of biodiversity effective given long-term climate change? Some conservation scientists argue that planning should focus on protecting the abiotic diversity in the landscape, which drives patterns of biological diversity, rather than focusing on the distribution of focal species, which shift in response to climate change. Climate is one important abiotic driver of biodiversity patterns, as different climates host different biological communities and genetic pools. We propose conservation networks that capture the full range of climatic diversity in a region will improve the resilience of biotic communities to climate change compared to networks that do not. In this study we used historical and future hydro-climate projections from the high resolution Basin Characterization Model to explore the utility of directly targeting climatic diversity in planning. Using the spatial planning tool, Marxan, we designed conservation networks to capture the diversity of climate types, at the regional and sub-regional scale, and compared them to networks we designed to capture the diversity of vegetation types. By focusing on the Conservation Lands Network (CLN) of the San Francisco Bay Area as a real-world case study, we compared the potential resilience of networks by examining two factors: the range of climate space captured, and climatic stability to 18 future climates, reflecting different emission scenarios and global climate models. We found that the climate-based network planned at the sub-regional scale captured a greater range of climate space and showed higher climatic stability than the vegetation and regional based-networks. At the same time, differences among network scenarios are small relative to the variance in climate stability across global climate models. Across different projected futures, topographically heterogeneous areas consistently show greater climate stability than homogenous areas. The analysis suggests that utilizing high-resolution climate and hydrological data in conservation planning improves the likely resilience of biodiversity to climate change. We used these analyses to suggest new conservation priorities for the San Francisco Bay Area.

Ecosphere↗
USGS2022

Biomarkers in the Precambrian: Earth’s ancient sedimentary record of life

The hydrocarbon remnants of biologically diagnostic lipids inform our understanding of Earth’s early ecosystems, particularly where morphological vestiges of biology are absent or ambiguous. Yet both the analysis and interpretation of ancient biomarkers require scrutinous approaches. Here, we describe the status quo of Precambrian biomarker geochemistry with four examples that highlight current challenges and opportunities.

Elements↗
USGS2011

Coastal and lower Elwha River, Washington, prior to dam removal--history, status, and defining characteristics: Chapter 1 in Coastal habitats of the Elwha River, Washington--biological and physical patterns and processes prior to dam removal

Characterizing the physical and biological characteristics of the lower Elwha River, its estuary, and adjacent nearshore habitats prior to dam removal is essential to monitor changes to these areas during and following the historic dam-removal project set to begin in September 2011. Based on the size of the two hydroelectric projects and the amount of sediment that will be released, the Elwha River in Washington State will be home to the largest river restoration through dam removal attempted in the United States. Built in 1912 and 1927, respectively, the Elwha and Glines Canyon Dams have altered key physical and biological characteristics of the Elwha River. Once abundant salmon populations, consisting of all five species of Pacific salmon, are restricted to the lower 7.8 river kilometers downstream of Elwha Dam and are currently in low numbers. Dam removal will reopen access to more than 140 km of mainstem, flood plain, and tributary habitat, most of which is protected within Olympic National Park. The high capture rate of river-borne sediments by the two reservoirs has changed the geomorphology of the riverbed downstream of the dams. Mobilization and downstream transport of these accumulated reservoir sediments during and following dam removal will significantly change downstream river reaches, the estuary complex, and the nearshore environment. To introduce the more detailed studies that follow in this report, we summarize many of the key aspects of the Elwha River ecosystem including a regional and historical context for this unprecedented project.

Washington↗
USGS2026

Bottom trawl assessment of Lake Ontario’s benthic prey fish community, 2025

Since 1978, bottom trawl surveys in Lake Ontario have provided information on the status and trends of the benthic prey fish community related to Fish Community Objectives that include understanding prey fish population dynamics and community diversity. Beginning in 2015, the benthic prey fish survey expanded from only U.S. sites to incorporate Canadian sites, increasing the survey’s spatial coverage to a lake-wide scale. Additionally, sampling in the eastern U.S. embayments (Black River, Chaumont, Guffin, and Henderson Bays), that were historically sampled during a September bottom trawl survey to index Yellow Perch ( Perca flavescens ; 1978-2007), resumed in 2015. The current survey provides abundance indices for sculpins, Round Goby ( Neogobius melanostomus ) and Bloater ( Coregonus hoy i) using techniques, gear, and timing comparable to surveys on Lake Michigan. This alignment provides a necessary biological reference point for evaluating Lake Ontario Bloater reintroduction. In 2025, the benthic prey fish survey completed 100 bottom trawl sites across main lake and embayment habitats at depths from 6 to 168 m. Sampling in US waters was limited in 2025 compared to previous years. In total, the 2025 survey sampled 59,870 fish from 23 species. No Bloater were detected in the 2025 survey. Round Goby was the most common species comprising 46% of the total catch by number, followed by Deepwater Sculpin ( Myoxocephalus thompsonii ), White Perch ( Morone americana ), and Alewife ( Alosa pseudoharengus ) at 23%, 9%, and 9% respectively. Slimy Sculpin ( Cottus cognatus ) lake-wide biomass density continues to be lower than when lakewide sampling began in 2015; zero Slimy Sculpin were detected in US waters, however sampling in the main lake within US waters was limited to the southeastern area of Lake Ontario. Deepwater Sculpin biomass has remained high since population recovery began in 2010. Embayment sampling in 2025 was limited to only Chaumont Bay.

Lake Ontario↗
USGS2011

A habitat overlap analysis derived from maxent for tamarisk and the south-western willow flycatcher

Biologic control of the introduced and invasive, woody plant tamarisk ( Tamarix spp, saltcedar) in south-western states is controversial because it affects habitat of the federally endangered South-western Willow Flycatcher ( Empidonax traillii extimus ). These songbirds sometimes nest in tamarisk where floodplain-level invasion replaces native habitats. Biologic control, with the saltcedar leaf beetle ( Diorhabda elongate ), began along the Virgin River, Utah, in 2006, enhancing the need for comprehensive understanding of the tamarisk-flycatcher relationship. We used maximum entropy (Maxent) modeling to separately quantify the current extent of dense tamarisk habitat (>50% cover) and the potential extent of habitat available for E. traillii extimus within the studied watersheds. We used transformations of 2008 Landsat Thematic Mapper images and a digital elevation model as environmental input variables. Maxent models performed well for the flycatcher and tamarisk with Area Under the ROC Curve (AUC) values of 0.960 and 0.982, respectively. Classification of thresholds and comparison of the two Maxent outputs indicated moderate spatial overlap between predicted suitable habitat for E. traillii extimus and predicted locations with dense tamarisk stands, where flycatcher habitat will potentially change flycatcher habitats. Dense tamarisk habitat comprised 500 km 2 within the study area, of which 11.4% was also modeled as potential habitat for E. traillii extimus . Potential habitat modeled for the flycatcher constituted 190 km 2 , of which 30.7% also contained dense tamarisk habitat. Results showed that both native vegetation and dense tamarisk habitats exist in the study area and that most tamarisk infestations do not contain characteristics that satisfy the habitat requirements of E. traillii extimus . Based on this study, effective biologic control of Tamarix spp. may, in the short term, reduce suitable habitat available to E. traillii extimus , but also has the potential in the long term to increase suitable habitat if appropriate mixes of native woody vegetation replace tamarisk in biocontrol areas.

Frontiers of Earth Science↗