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Important geographies for migrating and wintering waterfowl

This chapter identifies and describes the most important geographic regions for migrating and wintering waterfowl across North America. Although breeding habitats have historically been the focus of waterfowl conservation, this chapter emphasizes that the non-breeding period plays a critical role in shaping population dynamics. The authors use expert judgment, survey data, and conservation planning frameworks to designate regions that support large numbers of waterfowl or provide essential habitat functions. Organized primarily by flyway, these regions are described in terms of their physiography, climate, habitat resources, species assemblages, and conservation concerns. Particular attention is given to habitat loss, hydrological alteration, development pressure, and climate change, all of which pose ongoing threats to waterfowl populations. While limitations in data are acknowledged, this chapter represents one of the most comprehensive reviews of non-breeding waterfowl geographies to date and underscores the need for coordinated, annual cycle conservation strategies to sustain healthy waterfowl populations across the continent.

Book chapter↗

Adaptive management of rangeland systems

Adaptive management is an approach to natural resource management that uses structured learning to reduce uncertainties for the improvement of management over time. The origins of adaptive management are linked to ideas of resilience theory and complex systems. Rangeland management is particularly well suited for the application of adaptive management, having sufficient controllability and reducible uncertainties. Adaptive management applies the tools of structured decision making and requires monitoring, evaluation, and adjustment of management. Adaptive governance, involving sharing of power and knowledge among relevant stakeholders, is often required to address conflict situations. Natural resource laws and regulations can present a barrier to adaptive management when requirements for legal certainty are met with environmental uncertainty. However, adaptive management is possible, as illustrated by two cases presented in this chapter. Despite challenges and limitations, when applied appropriately adaptive management leads to improved management through structured learning, and rangeland management is an area in which adaptive management shows promise and should be further explored.

Book chapter↗

Simulating future uncertainty to guide the selection of survey designs for long-term monitoring

A goal of environmental monitoring is to provide sound information on the status and trends of natural resources (Messer et al. 1991, Theobald et al. 2007, Fancy et al. 2009). When monitoring observations are acquired by measuring a subset of the population of interest, probability sampling as part of a well-constructed survey design provides the most reliable and legally defensible approach to achieve this goal (Cochran 1977, Olsen et al. 1999, Schreuder et al. 2004; see Chapters 2, 5, 6, 7). Previous works have described the fundamentals of sample surveys (e.g. Hansen et al. 1953, Kish 1965). Interest in survey designs and monitoring over the past 15 years has led to extensive evaluations and new developments of sample selection methods (Stevens and Olsen 2004), of strategies for allocating sample units in space and time (Urquhart et al. 1993, Overton and Stehman 1996, Urquhart and Kincaid 1999), and of estimation (Lesser and Overton 1994, Overton and Stehman 1995) and variance properties (Larsen et al. 1995, Stevens and Olsen 2003) of survey designs. Carefully planned, “scientific” (Chapter 5) survey designs have become a standard in contemporary monitoring of natural resources. Based on our experience with the long-term monitoring program of the US National Park Service (NPS; Fancy et al. 2009; Chapters 16, 22), operational survey designs tend to be selected using the following procedures. For a monitoring indicator (i.e. variable or response), a minimum detectable trend requirement is specified, based on the minimum level of change that would result in meaningful change (e.g. degradation). A probability of detecting this trend (statistical power) and an acceptable level of uncertainty (Type I error; see Chapter 2) within a specified time frame (e.g. 10 years) are specified to ensure timely detection. Explicit statements of the minimum detectable trend, the time frame for detecting the minimum trend, power, and acceptable probability of Type I error (α) collectively form the quantitative sampling objective.

Book chapter↗

Genetic processes facilitating pathogen emergence

The goal of biosecurity is to minimize the risk of introduction and transmission of infectious diseases to people, animals, and plants. This is achieved by accurately identifying pathogens and instituting appropriate methods to prevent their introduction, reemergence, and/or spread. However, disease is dynamic, and biosecurity needs to continually change to keep pace as pathogens evolve. As described in this chapter, a basic understanding of evolution is central in considering how genetic changes and their associated phenotypes can alter the disease presentation of pathogens. In addition, evolution leaves a trail of genetic information that can be leveraged to inform biosecurity because the spatiotemporal patterns of these past changes provide clues as to how the pathogen might be spreading. This chapter aims to provide insights into how various genetic alterations occur, the background on how these are informative for biosecurity, and illustrations of applications to real-world examples. Evolution underlies the abilities of pathogens to adapt, emerge, and to cause epidemics.

Book chapter↗

Hot spots and hot moments in the Critical Zone: Identification of and incorporation into reactive transport models

Biogeochemical processes are often spatially discrete (hot spots) and temporally isolated (hot moments) due to variability in controlling factors like hydrologic fluxes, lithological characteristics, bio-geomorphic features, and external forcing. Although these hot spots and hot moments (HSHMs) account for a high percentage of carbon, nitrogen and nutrient cycling within the Critical Zone, the ability to identify and incorporate them into reactive transport models remains a significant challenge. This chapter provides an overview of the hot spots hot moments (HSHMs) concepts, where past work has largely focused on carbon and nitrogen dynamics within riverine systems. This work is summarized in the context of process-based and data-driven modeling approaches, including a brief description of recent research that casts a wider net to incorporate Hg, Fe and other Critical Zone elements, and focuses on interdisciplinary approaches and concepts. The broader goal of this chapter is to provide an overview of the gaps in our current understanding of HSHMs, and the opportunities therein, while specifically focusing on the underlying parameters and processes leading to their prognostic and diagnostic representation in reactive transport models.

Book chapter↗

Reproduction and reproductive strategies relevant to management of Whooping Cranes ex situ

Due to the small population size (∼400 birds) and continuing threats to wild Whooping Cranes ( Grus americana ), an ex situ (captive) population is maintained to contribute to the recovery of the species. The goals of the captive breeding program are to provide opportunity for research and birds for reintroduction. However, reproduction among captive birds is far from optimal. Specifically, whooping cranes maintained ex situ experience delayed onset of reproduction as well as low rates of egg production and egg fertility when compared to wild populations. To improve the contribution of the captive population to Whooping Crane recovery, there is a need to (1) advance the understanding about the mechanisms regulating ovarian function and egg production, especially the influence of males (their presence and behavior) on endocrine and reproductive behavior in females, as well as (2) identify the underlying cause(s) of poor reproduction in Whooping Cranes housed ex situ. In this chapter, we summarize current knowledge of Whooping Crane reproduction with a focus on egg production and fertility. We also discuss management strategies, such as environmental management, and reproductive technologies, including artificial insemination and sperm cryopreservation that may benefit captive reproduction, and finish with a discussion of future research priorities.

Book chapter↗

Rivers of the Lower Mississippi Basin

Discussed in this chapter are seven significant tributaries of the Lower Mississippi River and its major distributary. As a group, these eight rivers and their basins encompass substantial variation in physical form, hydrology, biota, ecology, and human impacts. The Current River, Ouachita River, and Saline River, flow to the Mississippi out of the U.S. Interior Highlands. The Cache River basin, centered in Arkansas, contains a vast expanse of bottomland hardwood forest and is famous for wintering waterfowl. The Hatchie River, flowing west out of Tennessee, is the longest free-flowing tributary of the Lower Mississippi River and famous for its rich diversity of mussels and fishes. The Wolf River of Tennessee supports a magnificent bald cypress-tupelo swamp and is notable as a protected urban river that flows through Memphis. The Big Sunflower River begins and ends in the alluvial floodplain of the Mississippi River and flows through a basin of intense agriculture and historical human conflict. The Atchafalaya River, the primary distributary of the Mississippi River, supports the nation's largest expanse of bottomland hardwood forest and swamp wetlands. In this chapter, we review the physiography, geomorphology, hydrology, water chemistry, land use, biological diversity, ecological processes, human impacts, and areas of need for research and management of each of these eight rivers and their basins.

Lower Mississippi River basin↗

Riparian restoration in the context of Tamarix control in the western United States: Chapter 23

This chapter focuses on the restoration of riparian systems in the context of Tamarix control—that is, Tamarix -dominated sites are converted to a replacement vegetation type that achieves specific management goals and helps return parts of the system to a desired and more natural state or dynamic. It reviews research related to restoring native riparian vegetation following tamarix control or removal. The chapter begins with an overview of objective setting and the planning of tamarix control and proceeds by emphasizing the importance of considering site-specific factors and of context in selecting and prioritizing sites for restoration. In particular, it considers valley and bottomland geomorphology, along with river flow regime and associated fluvial disturbance, surface water and groundwater availability, and soil salinity and texture. The chapter concludes with a discussion of costs and benefits associated with active, passive, and combined ecological restoration approaches, as well as the key issues to consider in carrying out restoration projects at a range of scales.

Book chapter↗

Preserving reptiles for research

What are voucher specimens and why do we collect them? Voucher specimens are animals and/or their parts that are deposited in a research museum to document the occurrence of a taxon at a specific location in space and time (Pleijel et al., 2008; Reynolds and McDiarmid, 2012). For field biologists, vouchers are the repeatable element of a field study as they allow other biologists, now and in the future, to confirm the identity of species that were studied. The scientific importance of a voucher specimen or series of specimens is that other people are afforded the opportunity to examine the entire animal and confirm or correct identifications. A photographic record is somewhat useful for recording the occurrence of a species, but such records can be insufficient for reliable confirmation of specific identity. Even if a photo shows diagnostic characters of currently recognized taxa, it may not show characters that separate taxa that may be described in the future. Substantial cryptic biodiversity is being found in even relatively well-known herpetofaunas (Crawford et al., 2010), and specimens allow researchers to retroactively evaluate the true diversity in a study as understanding of taxonomy evolves. They enable biologists to study the systematic relationships of populations by quantifying variation in different traits. Specimens are also a source of biological data such as behaviour, ecology, epidemiology, and reproduction through examination of their anatomy, reproductive and digestive tracts, and parasites (Suarez and Tsutsui, 2004). Preserving reptiles as vouchers is not difficult, although doing it properly requires care, effort, and time. Poorly preserved vouchers can invalidate the results and conclusions of your study because of the inability to confirm the identity of your study animals. Good science requires repeatability of observations, and the absence of vouchers or poorly preserved ones prevents such confirmation. Due to space restrictions, we are unable to go into as much detail as we would like in this chapter. A number of publications give more details on some topics discussed in this chapter, such as Pisani (1973), Pisani and Villa (1974), Etheridge (1996), Karns (1986), McDiarmid (1994), Cortez et al. (2006), Foster (2012) (and subchapters therein), Reynolds and McDiarmid (2012), and Simmons (2015). Although some of these works focus on amphibians, they also apply to reptiles in many aspects.

Book chapter↗

Observing and monitoring land use and land cover change

This chapter contains sections titled: Detecting Change at Multiple Spatial and Temporal Scales Defining Observation and Monitoring Tools for Change Observation and Monitoring Monitoring Change in Land Cover The Characteristics of Change Integrated Analysis of Change: Case Examples and Studies Challenges Advancing the State-of-the-Science in Change Observation and Monitoring

Book chapter↗

Evaluation of methods and uncertainties in the water budget

Water budget studies of Mirror Lake aim to measure hydrologic components interacting with the lake as accurately as possible. However, measurements of water budget components are subject to some degree of uncertainty. This chapter describes the methods used to quantify water budget components of Mirror Lake in detail. It examines uncertainties in precipitation values, monthly evaporation, water flows, and exchange with groundwater. It shows how those values were derived, including the assumptions that went into the calculations and the uncertainties inherent in the values.

New Hampshire↗

Modeling the long-term fate of agricultural nitrate in groundwater in the San Joaquin Valley, California

Nitrate contamination of groundwater systems used for human water supplies is a major environmental problem in many parts of the world. Fertilizers containing a variety of reduced nitrogen compounds are commonly added to soils to increase agricultural yields. But the amount of nitrogen added during fertilization typically exceeds the amount of nitrogen taken up by crops. Oxidation of reduced nitrogen compounds present in residual fertilizers can produce substantial amounts of nitrate which can be transported to the underlying water table. Because nitrate concentrations exceeding 10 mg/L in drinking water can have a variety of deleterious effects for humans, agriculturally derived nitrate contamination of groundwater can be a serious public health issue. The Central Valley aquifer of California accounts for 13 percent of all the groundwater withdrawals in the United States. The Central Valley, which includes the San Joaquin Valley, is one of the most productive agricultural areas in the world and much of this groundwater is used for crop irrigation. However, rapid urbanization has led to increasing groundwater withdrawals for municipal public water supplies. That, in turn, has led to concern about how contaminants associated with agricultural practices will affect the chemical quality of groundwater in the San Joaquin Valley. Crop fertilization with various forms of nitrogen-containing compounds can greatly increase agricultural yields. However, leaching of nitrate from soils due to irrigation has led to substantial nitrate contamination of shallow groundwater. That shallow nitrate-contaminated groundwater has been moving deeper into the Central Valley aquifer since the 1960s. Denitrification can be an important process limiting the mobility of nitrate in groundwater systems. However, substantial denitrification requires adequate sources of electron donors in order to drive the process. In many cases, dissolved organic carbon (DOC) and particulate organic carbon (POC) are the primary electron donors driving active denitrification in groundwater. The purpose of this chapter is to use a numerical mass balance modeling approach to quantitatively compare sources of electron donors (DOC, POC) and electron acceptors (dissolved oxygen, nitrate, and ferric iron) in order to assess the potential for denitrification to attenuate nitrate migration in the Central Valley aquifer.

California↗

Understanding natural capital

This chapter serves to introduce the geophysics of Neotropical steeplands. Topics are covered in a general manner with hyperlinks to active research and monitoring sites (such as the National Hurricane Center and US Geological Survey publication). Topics covered include ‘tropical climate and weather,’ ‘climate variations and trends,’ Neotropical ‘geology, and soils,’ ‘hillslopes and erosion,’ ‘lakes and reservoirs,’ and ‘effects of land cover on water quality and quantity.’ Obviously, this is a lot of information to cover in a short chapter, hence the use of hyperlinks. The last theme ‘effects of land cover on water quality and quantity’ is covered by case studies, in all of which I have been centrally involved. These studies were chosen because they are among the few studies with sufficient data of high enough quality to reach definitive conclusions.

Book chapter↗

Fire-related plant traits

As illustrated in Fig. 2.1 there are four environmental parameters that are necessary to determine the distribution of fire-prone ecosystems. However, they are insufficient to predict ecosystem responses to fire without a detailed understanding of the fire regime (see Fig. 2.7). Different fire regimes have very different potentials for recovery and place very different premiums on specific plant traits. For example, those traits contributing to the persistence of species in crown fire regimes will often be very different from those in surface fire regimes. In short, organisms are not adapted to fire per se , but rather to a particular fire regime. Plant traits that are adaptive in fire-prone environments are discussed here. The evolution of such traits and the extent to which they represent adaptations to fire are considered in Chapter 9. Plant populations exhibit four modes of recovery following fire: endogenous regeneration from resprouts or fire-triggered seedling recruitment, delayed seedling recruitment from postfire resprout seed production, delayed seedling recruitment from in situ surviving parent plants, or colonization from unburned metapopulations.

Book chapter↗

Interspecific interactions in trematode communities

This chapter reviews the behavioural ecology of trematodes, focusing on intramolluscular stages. Interspecific competitive interactions, their frequency, dominance hierarchies and resolutions are discussed. Strategies employed by larval trematode species to adapt to a hostile, competitive environment, how these adaptations shape larval trematode communities, and how altered trematode communities can affect ecosystems and human health are reviewed.

Book chapter↗

Dissimilatory reduction of selenate and arsenate in nature

This chapter discusses the biogeochemical reduction of selenate (Se(VI)) and arsenate (As(V)) when they enter anoxic environments and are used as electron acceptors for the oxidation of organic matter. These reductions are of a dissimilative nature and support the anaerobic growth of selected bacteria which conserve energy from this process. The chapter summarizes what is known about the bacteria's taxonomy, physiology, and biochemistry. Reduction to the solid, relatively unreactive Se(0) represents a mechanism for the removal of toxic Se(VI) and Se(IV) from natural waters. The environmental ramifications of these issues are also discussed in the chapter. The number of bacterial species known to respire selenate and arsenate continues to increase. The biological reduction of selenate and arsenate occurs for a number of reasons. In general, these are assimilation, regulation of reducing equivalents, detoxification, and dissimilation. Each is discussed in detail in the chapter. The realization that arsenate and selenate are indeed suitable electron acceptors and are readily available in both natural and contaminated environments suggests that even more unrelated species will be discovered. The initial biochemical studies also suggest that there may be different pathways for selenate and arsenate reduction, with specific terminal reductases and cytochromes.

Book chapter↗

Emerging contaminants in groundwater, karst, and the Edwards Aquifer

Karst aquifers have hydrogeologic characteristics that render them uniquely vulnerable to contamination from emerging contaminants (ECs). ECs comprise numerous chemical groups, including pharmaceuticals, personal-care products, flame retardants, perfluorinated and polyfluorinated compounds, nanoparticles and microplastics. Many ECs have sources, transport pathways, and chemical characteristics that facilitate their infiltration into groundwater, either indirectly from surface water or directly from sources such as landfill leachate and septic systems. What little is known about the occurrence, fate, and transport of ECs in the Edwards aquifer indicates that the aquifer might be increasingly vulnerable to this type of contamination. The natural physical characteristics of this karst aquifer and anthropogenic sources of ECs associated with increased urbanization in central Texas contribute to this vulnerability. In this chapter, we review groups of ECs and their sources, occurrence of ECs in groundwater and karst, and what is known about occurrence of ECs in the Edwards aquifer. We conclude by discussing specific factors, such as rapid flow and contaminant sources, that contribute to the vulnerability of the Edwards aquifer to contamination by ECs.

Texas↗