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Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

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At least 307 records · Page 17Linked to original sources
USGS2003

Effect of analytical conditions in wavelength dispersive electron microprobe analysis on the measurement of strontium-to-calcium (Sr/Ca) ratios in otoliths of anadromous salmonids

The use of strontium-to-calcium (Sr/Ca) ratios in otoliths is becoming a standard method to describe life history type and the chronology of migrations between freshwater and seawater habitats in teleosts (e.g. Kalish, 1990; Radtke et al., 1990; Secor, 1992; Rieman et al., 1994; Radtke, 1995; Limburg, 1995; Tzeng et al. 1997; Volk et al., 2000; Zimmerman, 2000; Zimmerman and Reeves, 2000, 2002). This method provides critical information concerning the relationship and ecology of species exhibiting phenotypic variation in migratory behavior (Kalish, 1990; Secor, 1999). Methods and procedures, however, vary among laboratories because a standard method or protocol for measurement of Sr in otoliths does not exist. In this note, we examine the variations in analytical conditions in an effort to increase precision of Sr/Ca measurements. From these findings we argue that precision can be maximized with higher beam current (although there is specimen damage) than previously recommended by Gunn et al. (1992).

Fishery Bulletin↗
USGS2012

Understanding the influence of predation on introduced fishes on juvenile salmonids in the Columbia River Basin: Closing some knowledge gaps. Late summer and fall diet and condition of smallmouth bass, walleye, and channel catfish in the middle Columbia River, USA. Interim Report of Research 2011.

American shad Alosa sapidissima in the middle Columbia River (MCR)&mdash;a high energy food available in the summer and fall&mdash;may be contributing to the increased growth and enhanced condition of nonnative piscivores. To test this hypothesis we quantified the late summer and autumn diets of smallmouth bass Micropterus dolomieu , walleye Sander vitreus , and channel catfish Ictalurus punctatus in the three lowermost reservoirs on the Columbia River (Bonneville [BON], The Dalles [TDA], and John Day [JDA]). The diet of smallmouth bass (SMB) was fairly similar among reservoirs, with crustaceans (52&ndash;82%) and fish (13&ndash;38%) being the dominant prey groups by percent mass. Cottidae were usually the dominant fish prey in the diet of SMB at all areas and the contribution of juvenile shad ranged from 0&ndash;8.2%. Fish (mostly Cyprinidae and Cottidae ) were always the dominant prey item for walleye (WAL) at all areas and at all times, ranging from 70&ndash;100% of their diet by mass. Juvenile American shad composed from 10&ndash;27% (by mass) of the diet of walleye, depending on area and month. For channel catfish (CHC), the most common prey items consumed were crustaceans (20%&ndash;80% by mass) and unidentified items (30%&ndash;80%). Fish represented a relatively small component (< 4%) of their diet. We also evaluated the condition of SMB and WAL by determining relative weights ( W r ) and hepatosomatic indices (HSI). Mean W r for SMB greater than 300 mm ranged from 0.89 to 0.94 depending on area and month and showed a significant increase from August to September for fish in BON only. Overall, mean W r of WAL was similar at all areas, ranging from 0.89&ndash;0.91, and increased significantly from September to mid-October and November for fish in TDA only. Overall, mean HSI of SMB ranged from 1.18 to 1.48, did not differ between fish in different reservoirs, and increased significantly from September to mid-October and November for fish from the lower JDA only. Mean HSI of WAL was significantly higher in October and November (0.95&plusmn;0.24) than in August (0.73&plusmn;0.22). Collectively, our results are the first to describe the diets of SMB, WAL, and CHC over a large spatial area in the MCR during late summer and fall. Only SMB and WAL consumed relevant amounts (up to 27% by mass for walleye) of American shad, however the influence of this diet item on their condition was not discernible because these fish showed only slight increases in condition indices that did not always correspond to a dietary shift that included an increase in shad consumption, and we could not discount the importance of other prey items. Our results should be useful for future discussions regarding predation and shad management in the Columbia River.

Oregon, Washington↗
USGS2012

Salmonid intranuclear microsporidosis

Nucleospora salmonis is an intra-nuclear microsporidian parasite in the family Enterocytozoonidae (Docker et al. 1997). Prespore stages of the parasite were first observed among adult and then juvenile Chinook salmon ( Oncorhynchus tshawytscha ) by Elston et al. (1987) and Morrison et al. (1990), respectively in Washington, U.S.A. The microsporidian nature of the parasite was subsequently confirmed by the observation of spores in lymphoblasts of juvenile Chinook salmon from California (Hedrick et al. 1991). The principal target cell for N. salmonis are hematopoietic cells which, upon infection, undergo proliferative changes leading to a leukemia-like condition with an accompanying anemia (Wongtavatchai et al. 1995).

Book chapter↗
USGS2012

Alternative barging strategies to improve survival of salmonids transported from Lower Granite Dam: Final report from the 2006-2008 spring/summer Chinook salmon and Steelhead juvenile migrations

In 2011, the final year class of adult salmon Oncorhynchus spp. returned from smolt groups released for a multi-year study to evaluate an alternate release site for transported fish. Smolts were collected and tagged at Lower Granite Dam, transported, and released at the alternate site near Astoria, Oregon (river kilometer 10) or at the traditional release site near Skamania Landing (rkm 225) just downstream of Bonneville Dam. Study fish were juvenile steelhead O. mykiss and yearling spring/summer Chinook salmon O. tshawytscha , and our evaluation was based on comparisons of smolt-to-adult return rates (SARs) between replicate paired groups. Our hypothesis was that moving the traditional barge-release site 215 km downstream could increase adult returns by decreasing smolt mortality due to predation by piscivorous fish and birds. Paired groups were released weekly over 6 weeks during the migration seasons of 2006, 2007, and 2008. The last adult steelhead from these releases returned in May 2011 (2-ocean), and the last adult Chinook salmon in August 2011 (3-ocean). We found no evidence of a consistent difference in SARs for fish released at the two barge-release locations. Data were not sufficient to evaluate the effects of fish pathogens on avian predation. There was clear evidence that fish of both species released at Astoria were less vulnerable to avian predators than those released at the customary site at Skamania Landing. Unfortunately, this survival benefit did not translate to higher SARs, as it was offset by higher rates of straying by fish released from Astoria. This was likely a result of greater impairment to homing ability for fish released at Astoria.

Oregon, Washington↗
USGS2011

Host specificity and ecology of infectious hematopoietic necrosis virus (IHNV) in Pacific salmonids

Some circumstances IHNV infection can cause acute disease with mortality ranging from 5-90% in host populations. Genetic typing of IHNV field isolates has shown that three major genetic groups of the virus occur in North America. These groups are designated the U, M, and L virus genogroups because they occur in the upper, middle, and lower portions of the geographic range of IHNV in western North America. Among field isolates there is some indication of host specificity: most IHNV isolated from sockeye salmon ( Oncorhynchus nerka ) is in the U genogroup, and most IHNV isolated from rainbow and steelhead trout ( Oncorhynchus mykiss ) is in the M genogroup. Experimental challenges confirm that U isolates are highly virulent for sockeye salmon, but not rainbow trout. In contrast, M isolates are virulent in rainbow trout but not in sockeye salmon. Studies comparing U and M virus infections show that virulence is associated with more rapid virus replication in the first few days after infection. In addition, high virulence isolates persist at higher viral loads in the host, while low virulence isolates do not persist. These host-specific aspects of the different IHNV genogroups are important for understanding the ecology of IHNV emergence events in the field. The recent emergence of U IHNV in Russian sockeye salmon of the Kamchatka Peninsula, and the emergence of M IHNV in steelhead trout on the Olympic Peninsula in the U.S.A, serve as examples of the relevance of IHNV host specificity.

Conference Paper↗
USGS2012

Spawning salmon and the fitness of stream-dwelling fishes: Marine-derived nutrients show saturating effects on growth and energy storage in juvenile salmonids

We examined how marine-derived nutrients (MDN), in the form of spawning Pacific salmon, influenced the nutritional status and d15N of stream-dwelling fishes. We sampled juvenile coho salmon (Oncorhynchus kisutch) and Dolly Varden (Salvelinus malma) during spring and fall from 11 south-central Alaskan streams that ranged widely in spawning salmon biomass (0.1&ndash;4.7 kg&bull;m&ndash;2). Growth rate (as indexed by RNA&ndash;DNA ratios), energy density, and d15N enrichment in spring-sampled fishes increased with spawner biomass, indicating the persistence of spawner effects more than 6 months after salmon spawning. Point estimates suggest that spawner effects on nutrition were substantially greater for coho salmon than Dolly Varden (268% and 175% greater for growth and energy, respectively), indicating that both species benefitted physiologically, but that juvenile coho salmon accrued more benefits than Dolly Varden. Although the data were less conclusive for fall- than spring-sampled fish, they do suggest spawner effects were also generally positive during fall, soon after salmon spawned. In a follow-up analysis where growth rate and energy density were modeled as a function of d15N enrichment, results suggested that both increased with MDN assimilation, especially in juvenile coho salmon. Our results support the importance of salmon runs to the nutritional ecology of stream-dwelling fishes.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2014

Quantifying the effectiveness of conservation measures to control the spread of anthropogenic hybridization in stream salmonids: A climate adaptation case study

Quantifying the effectiveness of management actions to mitigate the effects of changing climatic conditions (i.e., climate adaptation) can be difficult, yet critical for conservation. We used population genetic data from 1984 to 2011 to assess the degree to which ambient climatic conditions and targeted suppression of sources of nonnative Rainbow Trout Oncorhynchus mykiss have influenced the spread of introgressive hybridization in native populations of Westslope Cutthroat Trout O. clarkii lewisi . We found rapid expansion in the spatial distribution and proportion of nonnative genetic admixture in hybridized populations from 1984 to 2004, but minimal change since 2004. The spread of hybridization was negatively correlated with the number of streamflow events in May that exceeded the 75th percentile of historic flows ( r = −0.98) and positively correlated with August stream temperatures ( r = 0.89). Concomitantly, suppression data showed a 60% decline in catch per unit effort for fish with a high proportion of Rainbow Trout admixture, rendering some uncertainty as to the relative strength of factors controlling the spread of hybridization. Our results illustrate the importance of initiating management actions to mitigate the potential effects of climate change, even where data describing the effectiveness of such actions are initially limited but the risks are severe.

Montana↗
USGS2012

Use of acoustic telemetry to evaluate survival and behavior of juvenile salmonids at hydroelectric dams: A case study from Rocky Reach Dam, Columbia River, USA: Chapter 8.1

Telemetry provides a powerful and flexible tool for studying fish and other aquatic animals, and its use has become increasingly commonplace. However, telemetry is gear intensive and typically requires more specialized knowledge and training than many other field techniques. As with other scientific methods, collecting good data is dependent on an understanding of the underlying principles behind the approach, knowing how to use the equipment and techniques properly, and recognizing what to do with the data collected. This book provides a road map for using telemetry to study aquatic animals, and provides the basic information needed to plan, implement, and conduct a telemetry study under field conditions. Topics include acoustic or radio telemetry study design, tag implantation techniques, radio and acoustic telemetry principles and case studies, and data management and analysis. Chapters are written by biologists, technicians, and engineers from the private, academic, and government sectors, with decades of experience using these technologies.

Washington↗
USGS1989

Response of salmonid fish to artificial infection with chum salmon virus

In the fall of 1978, a reovirus was isolated from normal-appearing adult chum salmon (Oncorhynchus keta ) returning to the Tokushibetsu Hatchery in Hokkaido, Japan (Winton et al 1981). The chum salmon virus (CSW) was recovered in the chinook salmon ( Oncorhynchus tshawytscha ) embryo cell line (CHSE-214) where it replicated at 15-20 C, producing foci of syncytia in the monolayer. Electron microscopy revealed icosahedral particles, 75 nm in diameter, with a double capsid. The virus was not inactivated by chloroform or inhibited by fluorodeoxyuridine. It was unstable at 56 C, did not hemagglutinate human type 0 erythrocytes, and had a density of 1.33 g/ml in CsCl . The virus was not neutralized by antiserum against infectious pancreatic necrosis virus or mammalian reovirus serotypes 1, 2 or 3 (Winton 1981). Electrophoretic analysis showed the genome was composed of three large, three medium, and five small segments of double stranded RNA (dsRNA) that ranged from 0.37-2.5 x 10% molecular weight. The virions contained five major structural proteins and several minor proteins (Winton et al 1983).

Book chapter↗