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USGS1981

The partitioning of copper among selected phases of geologic media of two porphyry copper districts, Puerto Rico

In experiments designed to determine the manner in which copper is partitioned among selected phases that constitute geologic media, we have applied the five-step sequential extraction procedure of Chao and Theobald to the analysis of drill core, soils, and stream sediments of the Rio Vivi and Rio Tanama porphyry copper districts of Puerto Rico. The extraction procedure affords a convenient means of determining the trace-metal content of the following fractions: (1) Mn oxides and “reactive” Fe oxides; (2) “amorphous” Fe oxides; (3) “crystalline” Fe oxides; (4) sulfides and magnetite; and (5) silicates. An additional extraction between steps (1) and (2) was performed to determine organic-related copper in stream sediments. The experimental results indicate that apportionment of copper among phases constituting geologic media is a function of geochemical environment. Distinctive partitioning patterns were derived from the analysis of drill core from each of three geochemical zones: (a) the supergene zone of oxidation; (b) the supergene zone of enrichment; and (c) the hypogene zone; and similarly, from the analysis of; (d) soils on a weakly leached capping; (e) soils on a strongly leached capping; and (f) active stream sediment. The experimental results also show that geochemical contrasts (anomaly-to-background ratios) vary widely among the five fractions of each sampling medium investigated, and that at least one fraction of each medium provides substantially stronger contrast than does the bulk medium. Fraction (1) provides optimal contrast for stream sediments of the district; fraction (2) provides optimal contrast for soils on a weakly leached capping; fraction (3) provides optimal contrast for soils on a strongly leached capping. Selective extraction procedures appear to have important applications to the orientation and interpretive stages of geochemical exploration. Further investigation and testing of a similar nature are recommended.

Puerto Rico↗

USGS2021

Geoelectric survey of the Granite Gravel aquifer, Llano Uplift, Central Texas, to determine locations for water wells

An electrical geophysical survey was completed within a small area of the Llano Uplift of central Texas to determine locations to install two water wells in the Granite Gravel aquifer (GGA). Electrical resistivity tomography (ERT) was performed along two 188-m long profiles that intersected at the approximate center of a 100-m by 100-m self-potential (SP) map. The ERT survey was completed to map two-dimensional (2D) electric resistivity distributions in the GGA and the underlying Precambrian Town Mountain Granite (TMG) bedrock, whereas SP mapping was performed to delineate apparent streaming potential anomalies at the land surface that appeared correlated to the subsurface resistivity distributions, which exhibited strong lateral heterogeneity in the upper 35 m of the weathered layer that comprises the GGA. The depth to TMG bedrock, as shown by the resistivity distributions, varied substantially over relatively small profile distances and surface areas; however, the general electrical structure showed resistivity increasing with depth, beginning with a thin electrically conductive layer at the surface characterized by resistivity in the range of about 30–100 Ω-m, followed by a resistivity increase to 300–500 Ω-m at a depth that coincided with the water-table depth observed in the installed water wells. Resistivity of the TMG bedrock was generally greater than 500 Ω-m and exceeded 1000 Ω-m in some locations of the tomograms. Electrical structure beneath the survey area, as shown by the 2D resistivity distributions beneath the ERT profiles, delineated a relatively thick weathered section of GGA that spatially aligned with a conspicuous negative anomaly observed in the SP map after electrode-drift and terrain corrections were made. The combination of ERT and SP mapping guided selection of locations for two productive water wells within the small survey area despite substantial heterogeneity in the weathering profile of the GGA beneath the survey area.

Texas↗

USGS2013

Sampling efficiency of the Moore egg collector

Quantitative studies focusing on the collection of semibuoyant fish eggs, which are associated with a pelagic broadcast-spawning reproductive strategy, are often conducted to evaluate reproductive success. Many of the fishes in this reproductive guild have suffered significant reductions in range and abundance. However, the efficiency of the sampling gear used to evaluate reproduction is often unknown and renders interpretation of the data from these studies difficult. Our objective was to assess the efficiency of a modified Moore egg collector (MEC) using field and laboratory trials. Gear efficiency was assessed by releasing a known quantity of gellan beads with a specific gravity similar to that of eggs from representatives of this reproductive guild (e.g., the Arkansas River Shiner Notropis girardi) into an outdoor flume and recording recaptures. We also used field trials to determine how discharge and release location influenced gear efficiency given current methodological approaches. The flume trials indicated that gear efficiency ranged between 0.0% and 9.5% (n = 57) in a simple 1.83-m-wide channel and was positively related to discharge. Efficiency in the field trials was lower, ranging between 0.0% and 3.6%, and was negatively related to bead release distance from the MEC and discharge. The flume trials indicated that the gellan beads were not distributed uniformly across the channel, although aggregation was reduced at higher discharges. This clustering of passively drifting particles should be considered when selecting placement sites for an MEC; further, the use of multiple devices may be warranted in channels with multiple areas of concentrated flow.

North American Journal of Fisheries Management↗

USGS1995

Estimating number of species and relative abundances in stream-fish communities: effects of sampling effort and discontinuous spatial distributions

We sampled fishes and measured microhabitat in series of contiguous habitat units (riffles, runs, pools) in three Virginia streams. We used Monte Carlo simulations to construct hypothetical series of habitat units, then examined how number of species, similarity in relative abundances, and number of microhabitats accumulated with increasing number of habitat units (i.e., sampling effort). Proportions of all species and microhabitats represented were relatively low and variable at low sampling effort, but increased asymptotically and became less variable with greater sampling effort. To facilitate comparisons among streams, we fitted simulation results to negative exponential curves. The curves indicated that 90% of the species present were usually found by sampling 5 to 14 habitat units (stream length of 22–67 stream widths). Estimates of species relative abundances required less sampling effort for a given accuracy than estimates of number of species. Rates of species accumulation (with effort) varied among streams and reflected discontinuity in species distributions among habitat units. Most discontinuity seemed to be due to low population density rather than to habitat selectivity. Results from an Illinois stream corroborated our findings from Virginia, and suggested that greater sampling effort is needed to characterize fish community structure in more homogeneous stream reaches.

Virginia↗

USGS2019

The glycoprotein, non-virion protein, and polymerase of viral hemorrhagic septicemia virus are not determinants of host-specific virulence in rainbow trout

Viral hemorrhagic septicemia virus (VHSV), a fish rhabdovirus belonging to the Novirhabdovirus genus, causes severe disease and mortality in many marine and freshwater fish species worldwide. VHSV isolates are classified into four genotypes and each group is endemic to specific geographic regions in the north Atlantic and Pacific Oceans. Most viruses in the European VHSV genotype Ia are highly virulent for rainbow trout (Oncorhynchus mykiss), whereas, VHSV genotype IVb viruses from the Great Lakes region in the United States, which caused high mortality in wild freshwater fish species, are avirulent for trout. This study describes molecular characterization and construction of an infectious clone of the virulent VHSV-Ia strain DK-3592B from Denmark, and application of the clone in reverse genetics to investigate the role of selected VHSV protein(s) in host-specific virulence in rainbow trout (referred to as trout-virulence).

Virology Journal↗

USGS1999

Controlling for varying effort in count surveys: An analysis of Christmas Bird Count data

The Christmas Bird Count (CBC) is a valuable source of information about midwinter populations of birds in the continental U.S. and Canada. Analysis of CBC data is complicated by substantial variation among sites and years in effort expended in counting; this feature of the CBC is common to many other wildlife surveys. Specification of a method for adjusting counts for effort is a matter of some controversy. Here, we present models for longitudinal count surveys with varying effort; these describe the effect of effort as proportional to exp(B effortp), where B and p are parameters. For any fixed p, our models are loglinear in the transformed explanatory variable (effort)p and other covariables. Hence, we fit a collection of loglinear models corresponding to a range of values of p and select the best effort adjustment from among these on the basis of fit statistics. We apply this procedure to data for six bird species in five regions, for the period 1959-1988.

Journal of Agricultural, Biological, and Environme↗

USGS1994

Herbivory on shoalgrass by wintering redheads in Texas

An estimated 80% of redheads ( Aythya americana ) winter on the Laguna Madre of south Texas and Mexico and feed almost exclusively on shoalgrass ( Halodule wrightii ) rhizomes. Shoalgrass abundance has decreased by 60% over the past 30 years, and because the effects of shoalgrass loss on wintering redheads are unknown, we initiated a study to define habitat selection criteria and document the effect of wintering redheads on shoalgrass in the lower Laguna Madre, Texas. Redheads consumed an average of 75% of shoalgrass rhizome biomass at collection sites each winter. When rhizome biomass was grazed to a mean biomass of ltoreq 0.18 g dry mass/core (approximately 10 g dry mass/ml), shoalgrass did not recover to its previous level the following growing season. Thirty-three percent of the sites (10) were grazed below 0.18 g dry mass/core during both years of the study, while 64% (19) were grazed below 0.18 g during 1 or the other of the 2 winters. Ramet number was positively correlated ( P < 0.001, r 2 = 0.54) with rhizome biomass; however, this relationship was influenced by grazing intensity. Heavy grazing reduced the amount of rhizome attached to each ramet compared with ungrazed ramets. Grazing had no effect on root biomass ( P = 0.388), rhizome moisture content ( P = 0.553), or soil magnesium, phosphorous, and potassium ( P = 0.102, 0.499, 0.162, respectively). Redhead presence increased ( P = 0.042) soil nitrogen levels. Foraging areas selected by redheads within the lower Laguna Madre had lower ( P = 0.026) salinities (24 ppt) than areas not selected (35 ppt). Redheads did not select foraging areas in relation to crude protein levels in rhizomes. Shoalgrass habitat in the Laguna Madre should be protected from further losses and enhanced where possible.

Texas↗

USGS2003

Bibliography on the Distribution, Properties, and Uses of Zeolites from Sedimentary Deposits, 1998-2002

This bibliography is an alphabetical listing by author of about 1,500 publications and formal releases, including patents and selected abstracts, from the world literature on the distribution, properties, and uses of zeolites from sedimentary deposits for the period 1998-2002. The bibliography is available on a 3.5-inch floppy diskette, which was prepared on a MacintoshTM computer using EndNoteTM software. Computer searches of the bibliography can be made by author, year, title, journal, publisher, and keywords.

Open-File Report↗

USGS2025

Daily survival rate and nest-site selection of Zone-tailed Hawks (Buteo albonotatus) in the Chihuahuan Desert ecoregion of Texas

The Zone-tailed Hawk ( Buteo albonotatus ) is one of the least studied raptors in North America and lacks contemporary literature allowing informed management decisions for this species. Zone-tailed Hawks occupy rugged areas in the southwestern region of the United States and are listed as state threatened in Texas. Our objectives were to assess habitat, productivity, and daily survival rate (DSR) of Zone-tailed Hawk nests in riparian zones of the Chihuahuan Desert Ecoregion of Texas. We surveyed for Zone-tailed Hawk nests along ∼30 km of 12 riparian corridors in Brewster, Jeff Davis, and Presidio Counties, Texas. We monitored 11 and 15 Zone-tailed Hawk nests in 2018 and 2019, respectively, and conducted vegetation surveys at the nest tree, nest site (11.3-m radius), and paired random locations. We used nest survival modeling to evaluate the effects of eight habitat variables (nest tree diameter at breast height [DBH], nest tree height, nest height, nest distance to main stem, nest to tree height ratio, mean stand height, number of trees within nest site, and mean nest site DBH) on nest DSR. DSR was positively correlated with nest to tree height ratio and nest tree DBH. Zone-tailed Hawk nests had an estimated 0.991 (standard error [SE] = 0.004, 95% CI = 0.980–0.996) constant DSR and ultimately a 51.4% chance of nest success (SE = 0.0943) across the nesting season. Our results suggest that by selecting larger trees for nesting as well as placing nests higher within the tree, Zone-tailed Hawks may increase their chances of successfully fledging young.

Texas↗

USGS2008

Effectiveness of piscicides for controlling round gobies (Neogobius melanostomus)

Round gobies (Neogobius melanostomus) were introduced to the Great Lakes presumably as a result of ballast water releases from seagoing freighters returning from European water bodies. These unwelcome fish have become established in the Great Lakes region and are expanding their range to suitable portions of other interior drainage basins including the Mississippi River traversing the central United States and the Trent-Severn waterway spanning south-central Ontario. If the invasion continues, use of chemical toxicants as a control measure may be necessary. Toxicity tests of the currently registered piscicides antimycin, rotenone, 3-trifluoromethyl-4-nitrophenol (TFM), and Bayluscide?? were conducted with three fish species native to the Great Lakes and round gobies collected from the Illinois Waterway. Tests indicated that round gobies are sensitive to all of the piscicides, however, the level of sensitivity is similar to that of the native fish species tested. Therefore, currently registered piscicides have limited potential to selectively remove round gobies. Bottom-release formulations of Bayluscide?? and antimycin were also evaluated as control agents for the normally bottom-dwelling round goby. Avoidance behavior tests demonstrated that the round goby did not react to the presence of either chemical. Therefore, the bottom-release formulations may have some application for the selective removal of round gobies, and may be one of the few tools presently available to fishery managers to help limit the range expansion of this invasive fish.

Journal of Great Lakes Research↗

USGS2016

Active season microhabitat and vegetation selection by giant gartersnakes associated with a restored marsh in California

Studies of habitat selection can reveal important patterns to guide habitat restoration and management for species of conservation concern. Giant gartersnakes Thamnophis gigas are endemic to the Central Valley of California, where >90% of their historical wetland habitat has been converted to agricultural and other uses. Information about the selection of habitats by individual giant gartersnakes would guide habitat restoration by indicating which habitat features and vegetation types are likely to be selected by these rare snakes. We examined activity patterns and selection of microhabitats and vegetation types by adult female giant gartersnakes with radiotelemetry at a site composed of rice agriculture and restored wetlands using a paired case-control study design. Adult female giant gartersnakes were 14.7 (95% credible interval [CRI] = 9.4–23.7) times more likely to be active (foraging, mating, or moving) when located in aquatic habitats than when located in terrestrial habitats. Microhabitats associated with cover—particularly emergent vegetation, terrestrial vegetation, and litter—were positively selected by giant gartersnakes. Individual giant gartersnakes varied greatly in their selection of rice and rock habitats, but varied little in their selection of open water. Tules Schoenoplectus acutus were the most strongly selected vegetation type, and duckweed Lemna spp., water-primrose Ludwigia spp., forbs, and grasses also were positively selected at the levels of availability observed at our study site. Management practices that promote the interface of water with emergent aquatic and herbaceous terrestrial vegetation will likely benefit giant gartersnakes. Given their strong selection of tules, restoration of native tule marshes will likely provide the greatest benefit to these threatened aquatic snakes.

California↗

USGS1985

Digital to Analog Conversion and Visual Evaluation of Thematic Mapper Data

As a part of the National Aeronautics and Space Administration Landsat D Image Data Quality Analysis Program, the Earth Resources Observation Systems Data Center (EDC) developed procedures to optimize the visual information content of Thematic Mapper data and evaluate the resulting photographic products by visual interpretation. A digital-to-analog transfer function was developed which would properly place the digital values on the most useable portion of a film response curve. Individual black-and-white transparencies generated using the resulting look-up tables were utilized in the production of color-composite images with varying band combinations. Four experienced photointerpreters ranked 2-cm-diameter (0. 75 inch) chips of selected image features of each band combination for ease of interpretability. A nonparametric rank-order test determined the significance of interpreter preference for the band combinations.

Journal of Imaging Technology↗

USGS1985

Digital to analog conversion and visual evaluation of Thematic Mapper data

Journal of Imaging Technology↗

USGS2022

Microhabitat use of larval fish in a South Carolina Piedmont stream

Understanding habitat use and nursery areas of larval fish is a key component to managing and conserving riverine fishes. Yet, freshwater researchers often focus only on adult fishes, resulting in a limited understanding of the habitat requirements for the early life stages of freshwater fishes. The goal of this study was to quantify the larval fish microhabitat use of three fish families in Twelvemile Creek, a fifth-order tributary of Lake Hartwell (Savannah River basin) in the Piedmont ecoregion of South Carolina, USA. We used handheld dipnets to sample larval fishes along 20 equidistant transects spaced 10 m apart weekly from May to July 2021 along a 200 m stream reach. We also collected microhabitat data at each larval fish capture location. Most captured individuals were in the metalarval stage and were identified to the family level. A partial distance-based redundancy analysis indicated that water velocity contributed to changes in larval fish assemblage structure. Larval fishes occupied a subset of the available habitat that was characterized by low water velocity, non- Podostemum substrate, and shallow habitats close to the shore or bed rock structure. We also detected temporal patterns in larval fish counts, with peak Percidae and Leuciscidae counts in late July and the highest Catostomidae counts in late May–early June. Our results suggest that larval fishes select habitats with low water velocity and shallow habitats close to shore microhabitat characteristics, and that riffle-pool sequences may serve as a nursery habitat for Percidae, Catostomidae and Leuciscidae metalarvae.

South Carolina↗

USGS2019

Elevated heterozygosity in adults relative to juveniles provides evidence of viability selection on eagles and falcons

Viability selection yields adult populations that are more genetically variable than those of juveniles, producing a positive correlation between heterozygosity and survival. Viability selection could be the result of decreased heterozygosity across many loci in inbred individuals and a subsequent decrease in survivorship resulting from the expression of the deleterious alleles. Alternatively, locus-specific differences in genetic variability between adults and juveniles may be driven by forms of balancing selection, including heterozygote advantage, frequency-dependent selection, or selection across temporal and spatial scales. We use a pooled-sequencing approach to compare genome-wide and locus-specific genetic variability between 74 golden eagle ( Aquila chrysaetos ), 62 imperial eagle ( Aquila heliaca ), and 69 prairie falcon ( Falco mexicanus ) juveniles and adults. Although genome-wide genetic variability is comparable between juvenile and adult golden eagles and prairie falcons, imperial eagle adults are significantly more heterozygous than juveniles. This evidence of viability selection may stem from a relatively smaller imperial eagle effective population size and potentially greater genetic load. We additionally identify ~2000 single-nucleotide polymorphisms across the 3 species with extreme differences in heterozygosity between juveniles and adults. Many of these markers are associated with genes implicated in immune function or olfaction. These loci represent potential targets for studies of how heterozygote advantage, frequency-dependent selection, and selection over spatial and temporal scales influence survivorship in avian species. Overall, our genome-wide data extend previous studies that used allozyme or microsatellite markers and indicate that viability selection may be a more common evolutionary phenomenon than often appreciated.

Journal of Heredity↗

USGS1999

Surface water-ground water interaction: Herbicide transport into municipal collector wells

During spring runoff events, herbicides in the Platte River are transported through an alluvial aquifer into collector wells located on an island in the river in 6 to 7 d. During two spring runoff events in 1995 and 1996, atrazine [2-chloro-4-ethylamino-6-isopropylamino- s -triazine] concentrations in water from these wells reached approximately 7 µg/L, 70 times more than the background concentration in ground water. Concentrations of herbicides and metabolites in the collector wells generally were one-half to one-fifth the concentrations of herbicides in the river for atrazine, alachlor [2-chloro-2′-6′-diethyl- N -(methoxymethyl)-acetanilide], alachlor ethane-sulfonic acid (ESA) [2-((2,6-diethylphenyl) (methoxymethyl)amino)-2-oxoethane-sulfonic acid], metolachlor [2-chloro- N -(2-ethyl-6-methylphenyl)- N -(2-methoxy-1-methylethyl)acetamide], cyanazine [2-((4-chloro-6-(ethylamino)-1,3,5 triazin-2-yl)-amino)-2-methylpropionitrile], and acetochlor [2-chloro- N -(ethoxymethyl)- N -(2-ethyl-6methyl-phenyl) acetamide], suggesting that 20 to 50% river water could be present in the water from the collector wells, assuming no degradation. The effect of the river on the quality of water from the collector wells can be reduced through selective management of horizontal laterals of the collector wells. The quality of the water from the collector wells is dependent on the (i) selection of the collector well used, (ii) number and selection of laterals used, (iii) chemical characteristics of the contaminant, and (iv) relative mixing of the Platte River and a major upstream tributary.

Journal of Environmental Quality↗

USGS2003

The challenge of archiving and preserving remotely sensed data

Few would question the need to archive the scientific and technical (S&T) data generated by researchers. At a minimum, the data are needed for change analysis. Likewise, most people would value efforts to ensure the preservation of the archived S&T data. Future generations will use analysis techniques not even considered today. Until recently, archiving and preserving these data were usually accomplished within existing infrastructures and budgets. As the volume of archived data increases, however, organizations charged with archiving S&T data will be increasingly challenged (U.S. General Accounting Office, 2002). The U.S. Geological Survey has had experience in this area and has developed strategies to deal with the mountain of land remote sensing data currently being managed and the tidal wave of expected new data. The Agency has dealt with archiving issues, such as selection criteria, purging, advisory panels, and data access, and has met with preservation challenges involving photographic and digital media. That experience has allowed the USGS to develop management approaches, which this paper outlines.

Data Science Journal↗

USGS1998

A comparison of small-mammal communities in a desert riparian floodplain

We compared small-mammal communities between inactive floodplain and actively flooded terraces of riparian habitat in the Verde Valley of central Arizona. We used species diversity, abundance, weight of adult males, number of juveniles, number of reproductively active individuals, longevity, residency status, and patterns of microhabitat use to compare the two communities. Although abundances of small mammals tended to be higher in the active floodplain, species diversity was greater in the inactive floodplain. Results were inconsistent with our initial prediction that actively flooded riparian habitat acts as a species source, whereas inactive floodplain acts as a sink or dispersal site for small mammals. Within each habitat type, we found evidence of significant microhabitat separation among the three most abundant small-mammal species (Peromyscus boylii, P. eremicus, and Neotoma albigula). Percent cover by annual and perennial grasses and shrubs, substrate, and frequency of shrubs, trees, and debris were significant determinants of small-mammal distribution within a habitat type. We found that the three most abundant species selected a nonrandom subset of available habitat. Nonrandom use of habitat and microhabitat separation were the two most important mechanisms structuring small-mammal communities in riparian habitat of central Arizona.

Journal of Mammalogy↗