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The scientific referee

In the May 1973 issue of EOS, I criticized tendencies in earth science periodicals to discourage referee anonymity. I stressed that exposing referees to unnecessary personal and subjective influences tended to degrade standards of quality and promoted cliques, fragmentation, superspecialization, and proliferation of scientific literature. Generally speaking, division of opinion on this question, based on letters and personal contacts since 1973, has tended (with notable exceptions) to divide along two lines: the “wise old heads” favor anonymity, whereas many young idealists favor openness. Referees can help keep literature standards high (there is no evidence that they can or do thwart new ideas, determinedly pushed). but they can do little to stop literature proliferation, If individuals do scientific work, they may as well publish of not do it at all. The only real solutions to literature proliferation are fewer scientists or a drastic paper shortage, as experienced in Bulgaria.

IEEE Transactions on Professional Communication

Precipitation history of the Colorado Plateau region, 1900-2000

The Colorado Plateau covers 210,000 km 2 (130,000 mi 2) of Utah, Colorado, New Mexico, and Arizona. Management of this region?s resources requires an understanding of how its climate has varied in the past and may change in the near future. Recent studies by U.S. Geological Survey (USGS) and other scientists suggest that the region may become drier for the next 2 to 3 decades, in a pattern similar to the drought of 1942?1977. The region?s population has increased fourfold since the mid-1950s, creating the possibility of severe consequences if such a drought were repeated.

Fact Sheet

A quarter century of research on the Colorado Plateau: A compilation of the Colorado Plateau Biennial Conference Proceedings for 1993-2015

This Open-File Report is a compilation of the work published in the Colorado Plateau Biennial Conference book series over the span of the past nearly quarter century (conferences held between 1991–2011). The primary focus of the conferences has been to work toward integrating new science findings into management of the region’s natural and cultural resources. This conference and book series has begun a tradition of cooperation and community, bridging cultural, social, and biophysical research interests and addressing the needs of scientists and land managers working in a complex geographic area. We include here the abstracts for each of the 11 books in the series, as well as links to files with comprehensive literature citations and author listings. The goal of this compilation is to encourage further cooperation and communication on research and management issues of the Colorado Plateau among researchers, land managers, Native American tribes, and the public.

Open-File Report

EAARL-B submerged topography: Barnegat Bay, New Jersey, post-Hurricane Sandy, 2012-2013

These remotely sensed, geographically referenced elevation measurements of lidar-derived submerged topography datasets were produced by the U.S. Geological Survey (USGS), St. Petersburg Coastal and Marine Science Center, St. Petersburg, Florida. This project provides highly detailed and accurate datasets for part of Barnegat Bay, New Jersey, acquired post-Hurricane Sandy on November 1, 5, 16, 20, and 30, 2012; December 5, 6, and 21, 2012; and January 10, 2013. The datasets are made available for use as a management tool to research scientists and natural-resource managers. An innovative airborne lidar system, known as the second-generation Experimental Advanced Airborne Research Lidar (EAARL-B), was used during data acquisition. The EAARL-B system is a raster-scanning, waveform-resolving, green-wavelength (532-nm) lidar designed to map nearshore bathymetry, topography, and vegetation structure simultaneously. The EAARL-B sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive lidar, down-looking red-green-blue (RGB) and infrared (IR) digital cameras, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit, which provide for sub-meter georeferencing of each laser sample. The nominal EAARL-B platform is a twin-engine Cessna 310 aircraft, but the instrument may be deployed on a range of light aircraft. A single pilot, a lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL-B system. The resulting data were then processed using the Airborne Lidar Processing System (ALPS), a custom-built processing system developed originally in a NASA-USGS collaboration. The exploration and processing of lidar data in an interactive or batch mode is supported using ALPS. Modules for presurvey flight-line definition, flight-path plotting, lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. The Airborne Lidar Processing System (ALPS) is used routinely to create maps that represent submerged or sub-aerial topography. Specialized filtering algorithms have been implemented to determine the "bare earth" under vegetation from a point cloud of last return elevations. For more information about similar projects, please visit the Lidar for Science and Resource Management Web site .

New Jersey

Digital data for volcano hazards of the Three Sisters region, Oregon

Three Sisters is one of three active volcanic centers that lie close to rapidly growing communities and resort areas in Central Oregon. The major composite volcanoes of this area are clustered near the center of the region and include South Sister, Middle Sister, and Broken Top. Additionally, hundreds of mafic volcanoes are scattered throughout the Three Sisters area. These range from small cinder cones to large shield volcanoes like North Sister and Belknap Crater. Hazardous events include landslides from the steep flanks of large volcanoes and floods, which need not be triggered by eruptions, as well as eruption-triggered events such as fallout of tephra (volcanic ash) and lava flows. A proximal hazard zone roughly 20 kilometers (12 miles) in diameter surrounding the Three Sisters and Broken Top could be affected within minutes of the onset of an eruption or large landslide. Distal hazard zones that follow river valleys downstream from the Three Sisters and Broken Top could be inundated by lahars (rapid flows of water-laden rock and mud) generated either by melting of snow and ice during eruptions or by large landslides. Slow-moving lava flows could issue from new mafic volcanoes almost anywhere within the region. Fallout of tephra from eruption clouds can affect areas hundreds of kilometers (miles) downwind, so eruptions at volcanoes elsewhere in the Cascade Range also contribute to volcano hazards in Central Oregon. Scientists at the Cascades Volcano Observatory created a geographic information system (GIS) data set which depicts proximal and distal lahar hazard zones as well as a regional lava flow hazard zone for Three Sisters (USGS Open-File Report 99-437, Scott and others, 1999). The various distal lahar zones were constructed from LaharZ software using 20, 100, and 500 million cubic meter input flow volumes. Additionally, scientists used the depositional history of past events in the Three Sisters Region as well as experience and judgment derived from the study of volcanoes to help construct the regional hazard zone.

Open-File Report

Impacts of volcanic gases on climate, the environment, and people

Gases from volcanoes give rise to numerous impacts on climate, the environment, and people. U.S. Geological Survey (USGS) scientists are inventorying gas emissions at many of the almost 70 active volcanoes in the United States. This effort helps build a better understanding of the dynamic processes at work on the Earth's surface and is contributing important new information on how volcanic emissions affect global change.

Open-File Report

A call to insect scientists: Challenges and opportunities of managing insect communities under climate change

As climate change moves insect systems into uncharted territory, more knowledge about insect dynamics and the factors that drive them could enable us to better manage and conserve insect communities. Climate change may also require us revisit insect management goals and strategies and lead to a new kind of scientific engagement in management decision-making. Here we make five key points about the role of insect science in aiding and crafting management decisions, and we illustrate those points with the monarch butterfly and the Karner blue butterfly, two species undergoing considerable change and facing new management dilemmas. Insect biology has a strong history of engagement in applied problems, and as the impacts of climate change increase, a reimagined ethic of entomology in service of broader society may emerge. We hope to motivate insect biologists to contribute time and effort toward solving the challenges of climate change.

Current Opinion in Insect Science

Oil and gas development in southwestern Wyoming— Energy data and services for the Wyoming Landscape Conservation Initiative (WLCI)

The purpose of this report is to explore current oil and gas energy development in the area encompassing the Wyoming Landscape Conservation Initiative. The Wyoming Landscape Conservation Initiative is a long-term science-based effort to ensure southwestern Wyoming's wildlife and habitat remain viable in areas facing development pressure. Wyoming encompasses some of the highest quality wildlife habitats in the Intermountain West. At the same time, this region is an important source of natural gas. Using Geographic Information System technology, energy data pertinent to the conservation decision-making process have been assembled to show historical oil and gas exploration and production in southwestern Wyoming. In addition to historical data, estimates of undiscovered oil and gas are included from the 2002 U.S. Geological Survey National Assessment of Oil and Gas in the Southwestern Wyoming Province. This report is meant to facilitate the integration of existing data with new knowledge and technologies to analyze energy resources development and to assist in habitat conservation planning. The well and assessment data can be accessed and shared among many different clients including, but not limited to, an online web-service for scientists and resource managers engaged in the Initiative.

Wyoming

USGS Gulf Coast Science Conference and Florida Integrated Science Center Meeting: Proceedings with abstracts, October 20-23, 2008, Orlando, Florida

Welcome! The USGS is the Nation's premier source of information in support of science-based decision making for resource management. We are excited to have the opportunity to bring together a diverse array of USGS scientists, managers, specialists, and others from science centers around the Gulf working on biologic, geologic, and hydrologic issues related to the Gulf of Mexico and the State of Florida. We've organized the meeting around the major themes outlined in the USGS Circular 1309, Facing Tomorrow's Challenges - U.S. Geological Survey Science in the Decade 2007-2017. USGS senior leadership will provide a panel discussion about the Gulf of Mexico and Integrated Science. Capstone talks will summarize major topics and key issues. Interactive poster sessions each evening will provide the opportunity for you to present your results and talk with your peers. We hope that discussions and interactions at this meeting will help USGS scientists working in Florida and the Gulf Coast region find common interests, forge scientific collaborations and chart a direction for the future. We hope that the meeting environment will encourage interaction, innovation and stimulate ideas among the many scientists working throughout the region. We'd like to create a community of practice across disciplines and specialties that will help us address complex scientific and societal issues. Please take advantage of this opportunity to visit with colleagues, get to know new ones, share ideas and brainstorm about future possibilities. It is our pleasure to provide this opportunity. We are glad you're here.

Open-File Report

Fort Collins Science Center fiscal year 2010 science accomplishments

The scientists and technical professionals at the U.S. Geological Survey (USGS), Fort Collins Science Center (FORT), apply their diverse ecological, socioeconomic, and technological expertise to investigate complicated ecological problems confronting managers of the Nation's biological resources. FORT works closely with U.S. Department of the Interior (DOI) agency scientists, the academic community, other USGS science centers, and many other partners to provide critical information needed to help answer complex natural-resource management questions. In Fiscal Year 2010 (FY10), FORT's scientific and technical professionals conducted ongoing, expanded, and new research vital to the science needs and management goals of DOI, other Federal and State agencies, and nongovernmental organizations in the areas of aquatic systems and fisheries, climate change, data and information integration and management, invasive species, science support, security and technology, status and trends of biological resources (including the socioeconomic aspects), terrestrial and freshwater ecosystems, and wildlife resources, including threatened and endangered species. This report presents selected FORT science accomplishments for FY10 by the specific USGS mission area or science program with which each task is most closely associated, though there is considerable overlap. The report also includes all FORT publications and other products published in FY10, as well as staff accomplishments, appointments, committee assignments, and invited presentations.

Open-File Report

Coldwater fish in wadeable streams

Standardizing sampling methods for fish populations across large regions is important for consistent measurement of large-scale effects of climate or geography. In addition, pooling samples creates larger sample sizes and can facilitate data sharing among scientists and land managers. Sampling freshwater fish has largely not been standardized due to the diversity of fish and habitats. USGS aquatic ecologist Jason Dunham and co-authors contributed a chapter about sampling coldwater fish in wadeable streams to a new book that details common methods, protocols, and guidelines for sampling fish across North America. Topics include three common sampling methods: electrofishing, snorkeling, and nest counts. Each method provides complementary information about different species and life stages. The information will be useful for initiating new or fine-tuning ongoing sampling programs.

Book chapter

Characterizing historic streamflow to support drought planning in the upper Missouri River basin

This project combined tree-ring based paleo and modern climate and hydrologic research aimed at understanding the primary influences on drought risk and water reliability in basins critical for western U.S. water resources. New paleohydrologic datasets and analyses were developed and applied to contextualize future streamflow projections and address specific water management questions. These questions centered around optimizing future water management protocols for numerous objectives ranging from improving agricultural water allocation during drought while maintaining instream flows for aquatic ecosystem health, to the testing of operations across large river systems with complex infrastructure critical for downstream flood control, navigation, and hydropower generation. USGS scientists worked closely with the Bureau of Reclamation to estimate both past and future drought risk at key management locations throughout the Missouri basin, the Milk and St. Mary River system, and across the major managed river systems in the western United States. These efforts provided a roadmap for future water management strategies under changing climate and water supply conditions, which are detailed in Reclamation’s newly completed Missouri Headwaters Basin Study, the 2021 SECURE Water Act Report, and the forthcoming update of the St. Mary and Milk Rivers Basin Study. Among the major scientific findings to emerge was a new understanding of the long-term (1200-year) history of drought variability for the Missouri River, which highlighted the unusual severity of the early 2000s drought across the Rocky Mountain headwaters and adjacent high plains. By combining the extended drought record with extensive modern and paleoclimate records, we document how warming exacerbates severities of naturally occurring droughts, with recent decades defined by “hot” droughts and the 2000s (2001-2010) drought ranking as the most severe event in 1200 years. Increasingly severe drought events such as this strain already over-allocated water resources that multiple sectors of society depend heavily upon.

upper Missouri River basin

USGS Research Helps the County of Los Angeles Address New Arsenic Standards

In January 2006, the U.S. Environmental Protection Agency (USEPA) enacted stringent standards on arsenic in drinking water. The new limitsraised concerns about wells in the Antelope Valley of northern Los Angeles County that had high levels of naturally occurring arsenic. To meet the new standard, Los Angeles County Waterworks District No. 40, part of the Los Angeles County Department of Public Works, considered building arsenic-removal facilities at a cost of nearly $34 million. Instead, the District initiated a well-modification project that was based on the findings of a U.S. Geological Survey (USGS) scientific investigation. Using a well flowmeter and down-hole sampler - invented by USGS scientists ? the study team found that high-arsenic levels were concen-trated in the deepest portions of the wells, 600 feet or more below the land surface. Using this finding, the District implemented a well modification pilot project where the deep portions of five wells were sealed off permanently, while preserving the ability to pump high-quality water from the upper sections. Well screens in the upper sections were first cleaned using an innovative sonic technique to increase the yield of high-quality water. The deeper sections then were sealed using micro-fine cement technology. The District now pumps water that meets the new USEPA standard for arsenic from the affected wells. Arsenic concentrations are lower by an average of 84 percent, while well yield is lower by only 24 percent. The total cost of the modification project for the five wells was $608,580; a one-time net savings of 550 percent over construction of an arsenic-removal facility.

Fact Sheet

Reducing risk where tectonic plates collide—U.S. Geological Survey subduction zone science plan

The U.S. Geological Survey (USGS) serves the Nation by providing reliable scientific information and tools to build resilience in communities exposed to subduction zone earthquakes, tsunamis, landslides, and volcanic eruptions. Improving the application of USGS science to successfully reduce risk from these events relies on whole community efforts, with continuing partnerships among scientists and stakeholders, including researchers from universities, other government labs and private industry, land-use planners, engineers, policy-makers, emergency managers and responders, business owners, insurance providers, the media, and the general public. Motivated by recent technological advances and increased awareness of our growing vulnerability to subduction-zone hazards, the USGS is uniquely positioned to take a major step forward in the science it conducts and products it provides, building on its tradition of using long-term monitoring and research to develop effective products for hazard mitigation. This science plan provides a blueprint both for prioritizing USGS science activities and for delineating USGS interests and potential participation in subduction zone science supported by its partners. The activities in this plan address many USGS stakeholder needs: High-fidelity tools and user-tailored information that facilitate increasingly more targeted, neighborhood-scale decisions to mitigate risks more cost-effectively and ensure post-event operability. Such tools may include maps, tables, and simulated earthquake ground-motion records conveying shaking intensity and frequency. These facilitate the prioritization of retrofitting of vulnerable infrastructure; Information to guide local land-use and response planning to minimize development in likely hazardous zones (for example, databases, maps, and scenario documents to guide evacuation route planning in communities near volcanoes, along coastlines vulnerable to tsunamis, and built on landslide-prone terrain); New tools to assess the potential for cascading hazards, such as landslides, tsunamis, coastal changes, and flooding caused by earthquakes or volcanic eruptions; Geospatial models of permanent, widespread land- and sea-level changes that may occur in the immediate aftermath of great ( M ≥8.0) subduction zone earthquakes; Strong partnerships between scientists and public safety providers for effective decision making during periods of elevated hazard and risk; Accurate forecasts of far-reaching hazards (for example, ash clouds, tsunamis) to avert catastrophes and unnecessary disruptions in air and sea transportation; Aftershock forecasts to guide decisions about when and where to re-enter, repair, or rebuild buildings and infrastructure, for all types of subduction zone earthquakes.

Circular

The atlantic salmon: Genetics, conservation and management

Atlantic Salmon is a cultural icon throughout its North Atlantic range; it is the focus of probably the World’s highest profile recreational fishery and is the basis for one of the World’s largest aquaculture industries. Despite this, many wild stocks of salmon are in decline and underpinning this is a dearth of information on the nature and extent of population structuring and adaptive population differentiation, and its implications for species conservation. This important new book will go a long way to rectify this situation by providing a thorough review of the genetics of Atlantic salmon. Sponsored by the European Union and the Atlantic Salmon Trust, this book comprises the work of an international team of scientists, carefully integrated and edited to provide a landmark book of vital interest to all those working with Atlantic salmon.

Book

The Chesapeake Bay program modeling system: Overview and recommendations for future development

The Chesapeake Bay is the largest, most productive, and most biologically diverse estuary in the continental United States providing crucial habitat and natural resources for culturally and economically important species. Pressures from human population growth and associated development and agricultural intensification have led to excessive nutrient and sediment inputs entering the Bay, negatively affecting the health of the Bay ecosystem and the economic services it provides. The Chesapeake Bay Program (CBP) is a unique program formally created in 1983 as a multi-stakeholder partnership to guide and foster restoration of the Chesapeake Bay and its watershed. Since its inception, the CBP Partnership has been developing, updating, and applying a complex linked modeling system of watershed, airshed, and estuary models as a planning tool to inform strategic management decisions and Bay restoration efforts. This paper provides a description of the 2017 CBP Modeling System and the higher trophic level models developed by the NOAA Chesapeake Bay Office, along with specific recommendations that emerged from a 2018 workshop designed to inform future model development. Recommendations highlight the need for simulation of watershed inputs, conditions, processes, and practices at higher resolution to provide improved information to guide local nutrient and sediment management plans. More explicit and extensive modeling of connectivity between watershed landforms and estuary sub-areas, estuarine hydrodynamics, watershed and estuarine water quality, the estuarine-watershed socioecological system, and living resources will be important to broaden and improve characterization of responses to targeted nutrient and sediment load reductions. Finally, the value and importance of maintaining effective collaborations among jurisdictional managers, scientists, modelers, support staff, and stakeholder communities is emphasized. An open collaborative and transparent process has been a key element of successes to date and is vitally important as the CBP Partnership moves forward with modeling system improvements that help stakeholders evolve new knowledge, improve management strategies, and better communicate outcomes.

Chesapeake Bay estuary and watershed

Marsh sediment in translation: A review of sediment transport across a natural tidal salt marsh in northern San Francisco Bay

Deposition of inorganic sediment is essential for the sustainability of tidal salt marshes. Understanding variability in sediment sources and the processes of sediment delivery to salt marshes are high priorities for decision-makers responsible for managing sediment and conserving and restoring marshes. Research on sediment transport to marshes is published in technical journals, but these scientific findings must be translated and communicated to inform critical decisions related to managing sediment in estuaries. We convened a diverse group of collaborators—including natural-resource managers, regulators, scientists, and restoration planners and practitioners—to review and interpret the results of previously published field investigations on and around the salt marsh at China Camp State Park in Marin County, California. We discussed and translated key results of those studies using new graphics and more accessible language. Here, we present a general introduction to the topic of sediment delivery to salt marshes, background descriptions of the China Camp marsh and the physical processes that we characterized there, key scientific conclusions, and proposed management implications. Key conclusions include (1) bay shallows are an important but variable source of marsh sediment, (2) flood tides and waves move sediment across the bay–marsh edge, (3) tidal creeks may not always import sediment to the marsh platform, and (4) protective effects of marsh vegetation depend on species and season. China Camp marsh is one of the last remaining pre-colonial salt marshes in the San Francisco Estuary and is unique in being relatively unmodified by humans and in retaining an unimpeded transition into natural uplands. Additional studies in a variety of marshes with different attributes and sediment regimes will broaden understanding of how best to conserve, manage, and restore tidal marshes that provide numerous ecosystem services to for humans and wildlife.

California

Understanding Metal Pathways in Mineralized Ecosystems

Successful management of ecosystems containing historical mine wastes requires understanding of processes that are responsible for the distribution, concentration, and bioavailability of potentially toxic elements. U.S. Geological Survey (USGS) scientists recently completed several investigations at historical mine sites in the western United States. These investigations have improved our understanding of how metals are mobilized from mineralized sources, are transported through the environment, and become available to humans and other biota. The new information is being used by Federal, State, and local agencies that manage and remediate abandoned mine lands.

Circular