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USGS2023

Evaluating and mitigating the impact of systematic geolocation error on canopy height measurement performance of GEDI

NASA's Global Ecosystem Dynamics Investigation (GEDI) is designed to provide high-resolution measurements of forest structure and topography between 52° N and S. However, current geolocation accuracy may limit further science applications of footprint-level products as early adopters have found it difficult to align with in-situ forestry inventory data and high-resolution imagery for calibration and validation purpose. Here we developed a new means to rapidly evaluate and mitigate the impact of systematic geolocation error on the performance of GEDI's forest height estimates in the US. By integrating nationwide high-resolution airborne lidar data collected through the 3D Elevation Program of the USGS, we provided optimal geolocation adjustments of GEDI at per beam level and tracked their performances over the first 18-mo. Our results suggest that the first release of GEDI product (R01) can have large systematic geolocation errors at beam level (i.e., 50.5% of beams with an error > 20 m). Its impact on canopy height measurement could drastically vary in space and time, which in turn also offers a separate indirect method to evaluate and track geolocation performance. The second release of GEDI data (R02) has achieved a much-improved systematic geolocation accuracy which is shown to meet the mission requirement (0.2% beams >20 m and 80.8% beams <10 m) and should be able to meet requirements from many practical science applications tolerant to moderate geolocation errors. In sum, our approach has provided a short-term solution for an enhanced Cal/Val strategy for GEDI. While further improvements will certainly be made in future releases, it can potentially create an alternative pathway to generate and validate biomass products by linking GEDI footprint samples directly with in-situ data collections.

Remote Sensing of Environment↗

USGS2000

Atmospheric nitrogen in the Mississippi River Basin: Amissions, deposition and transport

Atmospheric deposition of nitrogen has been cited as a major factor in the nitrogen saturation of forests in the north-eastern United States and as a contributor to the eutrophication of coastal waters, including the Gulf of Mexico near the mouth of the Mississippi River. Sources of nitrogen emissions and the resulting spatial patterns of nitrogen deposition within the Mississippi River Basin, however, have not been fully documented. An assessment of atmospheric nitrogen in the Mississippi River Basin was therefore conducted in 1998-1999 to: (1) evaluate the forms in which nitrogen is deposited from the atmosphere; (2) quantify the spatial distribution of atmospheric nitrogen deposition throughout the basin; and (3) relate locations of emission sources to spatial deposition patterns to evaluate atmospheric transport. Deposition data collected through the NADP/NTN (National Atmospheric Deposition Program/National Trends Network) and CASTNet (Clean Air Status and Trends Network) were used for this analysis. NO(x) Tier 1 emission data by county was obtained for 1992 from the US Environmental Protection Agency (Emissions Trends Viewer CD, 1985-1995, version 1.0, September 1996) and NH3 emissions data was derived from the 1992 Census of Agriculture (US Department of Commerce. Census of Agriculture, US Summary and County Level Data, US Department of Commerce, Bureau of the Census. Geographic Area series, 1995:1b) or the National Agricultural Statistics Service (US Department of Agriculture. National Agricultural Statistics Service Historical Data. Accessed 7/98 at URL, 1998. http://www.usda.gov/nass/pubs/hisdata.htm). The highest rates of wet deposition of NO3- were in the north-eastern part of the basin, downwind of electric utility plants and urban areas, whereas the highest rates of wet deposition of NH4+ were in Iowa, near the center of intensive agricultural activities in the Midwest. The lowest rates of atmospheric nitrogen deposition were on the western (windward) side of the basin, which suggests that most of the nitrogen deposited within the basin is derived from internal sources. Atmospheric transport eastward across the basin boundary is greater for NO3- than NH4+, but a significant amount of NH4+ is likely to be transported out of the basin through the formation of (NH4)2SO4 and NH4NO3 particles - a process that greatly increases the atmospheric residence time of NH4+. This process is also a likely factor in the atmospheric transport of nitrogen from the Midwest to upland forest regions in the North-East, such as the western Adirondack region of New York, where NH4+ constitutes 38% of the total wet deposition of N.

Science of Total Environment↗

USGS2001

A new global 1-km dataset of percentage tree cover derived from remote sensing

Accurate assessment of the spatial extent of forest cover is a crucial requirement for quantifying the sources and sinks of carbon from the terrestrial biosphere. In the more immediate context of the United Nations Framework Convention on Climate Change, implementation of the Kyoto Protocol calls for estimates of carbon stocks for a baseline year as well as for subsequent years. Data sources from country level statistics and other ground-based information are based on varying definitions of 'forest' and are consequently problematic for obtaining spatially and temporally consistent carbon stock estimates. By combining two datasets previously derived from the Advanced Very High Resolution Radiometer (AVHRR) at 1 km spatial resolution, we have generated a prototype global map depicting percentage tree cover and associated proportions of trees with different leaf longevity (evergreen and deciduous) and leaf type (broadleaf and needleleaf). The product is intended for use in terrestrial carbon cycle models, in conjunction with other spatial datasets such as climate and soil type, to obtain more consistent and reliable estimates of carbon stocks. The percentage tree cover dataset is available through the Global Land Cover Facility at the University of Maryland at http://glcf.umiacs.umd.edu.

Global Change Biology↗

USGS2018

Avian response to shade‐layer restoration in coffee plantations in Puerto Rico

Documenting the evolving processes associated with habitat restoration and how long it takes to detect avian demographic responses is crucial to evaluate the success of restoration initiatives and to identify ways to improve their effectiveness. The importance of this endeavor prompted the U.S. Fish and Wildlife Service and the USDA Natural Resources Conservation Service to evaluate their sun‐to‐shade coffee restoration program in Puerto Rico initiated in 2003. We quantified the responses of 12 resident avian species using estimates of local occupancy and extinction probabilities based on surveys conducted in 2015–2017 at 65 restored farms grouped according to time‐since‐initial‐restoration (TSIR): new (2011–2014), intermediate (2007–2010), and old (2003–2006). We also surveyed 40 forest sites, which served as reference sites. Vegetation complexity increased with TSIR, ranging between 35 and 40% forest cover in farms 6–9 years TSIR. Forest specialists (e.g. Loxigilla portoricencis ) exhibited highest average occupancy in farms initially classified as intermediate (6–9 years) and old (>10 years), paralleling occupancy in secondary forests. Occupancy of open‐habitat specialists (e.g. Tiaris olivaceus ) was more variable, but higher in recently restored farms. Restoring the shade layer has the potential to heighten ecological services derived from forest specialists (e.g. frugivores) without losing the services of many open‐habitat specialists (e.g. insectivores). Annual local extinction probability for forest specialists decreased with increasing habitat complexity, strengthening the potential value of shade restoration as a tool to enhance habitat for avifauna that evolved in forested landscapes.

Restoration Ecology↗

USGS1998

Level II scour analysis for Bridge 46 (LINCTH00060046) on Town Highway 6, crossing the New Haven River, Lincoln, Vermont

This report provides the results of a detailed Level II analysis of scour potential at structure LINCTH00060046 on Town Highway 6 crossing the New Haven River, Lincoln, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (FHWA, 1993). Results of a Level I scour investigation also are included in appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in appendix D. The site is in the Green Mountain section of the New England physiographic province in west-central Vermont. The 45.9-mi 2 drainage area is in a predominantly suburban and forested basin. In the vicinity of the study site, the surface cover is forest upstream of the bridge. The downstream right overbank near the bridge is suburban with buildings, homes, lawns, and pavement (less than fifty percent). The downstream left overbank is brushland while the immediate banks have dense woody vegetation. In the study area, the New Haven River has an incised, sinuous channel with a slope of approximately 0.01 ft/ft, an average channel top width of 95 ft and an average bank height of 7 ft. The channel bed material ranges from sand to bedrock with a median grain size (D 50 ) of 120.7 mm (0.396 ft). The geomorphic assessment at the time of the Level I and Level II site visit on June 13, 1996, indicated that the reach was stable. The Town Highway 34 crossing of the New Haven River is a 85-ft-long, two-lane bridge consisting of an 80-foot steel arch truss (Vermont Agency of Transportation, written communication, December 14, 1995). The opening length of the structure parallel to the bridge face is 69 feet. The bridge is supported by vertical, concrete abutments with wingwalls. The channel is skewed approximately 25 degrees to the opening while the opening-skew-to-roadway is 5 degrees. A scour hole 2.0 ft deeper than the mean thalweg depth was observed in the downstream channel during the Level I assessment. Protection measures at the site include type-1 stone fill (less than 12 inches diameter) at the upstream left wingwall, type-2 stone fill (less than 36 inches diameter) at the downstream end of the downstream left wingwall, and type-3 stone fill (less than 48 inches diameter) at the upstream right wingwall and the downstream end of the downstream right wingwall. Additional details describing conditions at the site are included in the Level II Summary and appendices D and E. Scour depths and recommended rock rip-rap sizes were computed using the general guidelines described in Hydraulic Engineering Circular 18 (Richardson and Davis, 1995). Total scour at a highway crossing is comprised of three components: 1) long-term streambed degradation; 2) contraction scour (due to accelerated flow caused by a reduction in flow area at a bridge) and; 3) local scour (caused by accelerated flow around piers and abutments). Total scour is the sum of the three components. Equations are available to compute depths for contraction and local scour and a summary of the results of these computations follows. Contraction scour for all modelled flows ranged from 0.0 to 1.7 ft. The worst-case contraction scour occurred at the incipient roadway-overtopping discharge. Left abutment scour ranged from 12.9 to 17.8 ft. Right abutment scour ranged from 5.9 to 11.9 ft. The worst-case abutment scour occurred at the incipient roadway-overtopping discharge. Additional information on scour depths and depths to armoring are included in the section titled “Scour Results”. Scoured-streambed elevations, based on the calculated scour depths, are presented in tables 1 and 2. A cross-section of the scour computed at the bridge is presented in figure 8. Scour depths were calculated assuming an infinite depth of erosive material and a homogeneous particle-size distribution. It is generally accepted that the Froehlich equation (abutment scour) gives “excessively conservative estimates of scour depths” (Richardson and Davis, 1995, p. 47). Usually, computed scour depths are evaluated in combination with other information including (but not limited to) historical performance during flood events, the geomorphic stability assessment, existing scour protection measures, and the results of the hydraulic analyses. Therefore, scour depths adopted by VTAOT may differ from the computed values documented herein.

Vermont↗

USGS2024

Abiotic and demographic drivers of flea parasitism on deer mice in a recovering mixed-conifer forest a decade postfire

With the intensity and frequency of wildfires increasing rapidly, the need to study the ecological effects of these wildfires is also growing. An understudied aspect of fire ecology is the effect fires have on parasite–host interactions, including ectoparasites that might be pathogen vectors. Although some studies have examined the impacts of fire on ticks, studies on other ectoparasites, including pathogen vectors, are rare. To help address this knowledge gap, we examined the abiotic and biotic factors that predict the likelihood and extent of parasitism of deer mice ( Peromyscus maniculatus ) by fleas within a landscape of unburned and recovering burned (>9 yr postfire) mixed conifer forests. We sampled 227 individual deer mice across 27 sites within the Jemez Mountains of northern New Mexico in 2022 and quantified measures of parasitism by fleas (primarily Aetheca wagneri ). These sites were distributed in both unburned areas (n = 15) and recovering burned areas (n = 12), with the latter derived from 2 large fires, the Las Conchas fire (2011) and the Thompson Ridge fire (2013). Using these data, we tested for differences in prevalence, mean abundance, and mean intensity of fleas on deer mice, focusing on the predictive importance of host sex and fire history. We also created generalized linear mixed-effects models to investigate the best host and environmental predictors of parasitism by fleas. Approximately a decade postfire, we found minimal evidence to suggest that fire history influenced either the presence or intensity of fleas on deer mice. Rather, at the current forest-regeneration stage, the extent of parasitism by fleas was best predicted by measures of host sex, body condition, and the trapline's ability to accumulate water, as measured through topography. As host body condition increased, the probability of males being parasitized increased, whereas the opposite pattern was seen for females. Male mice also had significantly greater flea loads. Among potential abiotic predictors, the topographic wetness index or compound topographic index (a proxy for soil moisture) was positively related to flea intensity, suggesting larger flea populations in burrows with higher relative humidity. In summary, although fire may potentially have short-term impacts on the likelihood and extent of host parasitism by fleas, in this recovering study system, host characteristics and topographic wetness index are the primary predictors of parasitism by fleas.

New Mexico↗

USGS2019

The long-term effects of Hurricanes Wilma and Irma on soil elevation change in Everglades mangrove forests

Mangrove forests in the Florida Everglades (USA) are frequently affected by hurricanes that produce high-velocity winds, storm surge, and extreme rainfall, but also provide sediment subsidies that help mangroves adjust to sea-level rise. The long-term influence of hurricane sediment inputs on soil elevation dynamics in mangrove forests are not well understood. Here, we assessed the effects of sediment deposition during Hurricanes Wilma (2005) and Irma (2017) on soil elevation change at two mangrove forests located along the Shark and Lostmans Rivers in Everglades National Park. We used surface elevation change data from a sixteen-year period (2002-2018), measured with the surface elevation table-marker horizon (SET-MH) approach. At the Shark River mangrove forest, we used marker horizons and a combination of deep, shallow, and original SETs to quantify the contributions of four soil zones to net soil elevation change. Rates of elevation change were greatly influenced by storm sediments. Abrupt increases in elevation due to sediment inputs and subsurface expansion during Hurricane Wilma were followed by: (1) an initial post-hurricane period of elevation loss due to erosion of hurricane sediments and subsurface contraction; (2) a secondary period of elevation gain due primarily to accretion; and (3) an abrupt elevation gain due to new sediment inputs during Hurricane Irma. Our findings suggest that elevation change in hurricane-affected mangrove forests can be cyclical or include disjunct phases, which is critical information for advancing the understanding of wetland responses to accelerated sea-level rise given the expectation of increasing storm intensity due to climate change.

Florida↗

USGS2021

Joint effects of climate, tree size, and year on annual tree growth derived using tree-ring records of ten globally distributed forests

Tree rings provide an invaluable long-term record for understanding how climate and other drivers shape tree growth and forest productivity. However, conventional tree-ring analysis methods were not designed to simultaneously account for the effects of climate, tree size, and other drivers on individual growth, which has limited the potential to use tree rings to understand forest productivity, its climate sensitivity, and its global change responses. Here, we develop and apply a new method to simultaneously model non-linear effects of primary climate drivers, reconstructed tree diameter (DBH), and year in generalized least squares models that account for the temporal autocorrelation inherent to each individual tree’s growth. We analyze data from 3811 trees representing 40 species at 10 globally distributed sites, showing that precipitation, temperature, DBH, and calendar year have additively, and often interactively, influenced annual growth over the past 120 years. Growth responses were predominantly positive to precipitation (usually over ≥ 3-month seasonal windows) and negative to temperature (usually over ≤ 3-month seasonal windows), with both included in 78% of top models, and with non-linear responses prevalent (63% of relationships). Climate sensitivity commonly varied with DBH (44% of cases tested). Trends in ring width at small DBH were linked to the light environment under which trees established, but basal area or biomass increments consistently peaked at intermediate DBH and declined thereafter. Accounting for climate and DBH, growth rate declined over time for 92% of species in secondary or disturbed stands, whereas growth trends were mixed in older forests. These trends were largely attributable to stand dynamics as cohorts and stands age, which remain challenging to disentangle from global change drivers. By providing a parsimonious approach for characterizing multiple interacting drivers of tree growth, our method reveals a more complete picture of the factors influencing growth than has previously been possible.

Indiana, Massachusetts, New Mexico, Nebraska, Utah↗

USGS1997

Evaluation of the potential for debris and hyperconcentrated flows in Capulin Canyon as a result of the 1996 Dome fire, Bandelier National Monument, New Mexico

The Dome fire of April 1996 burned 6684 ha in Bandelier National Monument and the adjacent Sante Fe National Forest. The potential for significant debris- and hyperconcentrated-flow activity in Capulin Canyon is evaluated through 1) a systematic consideration of geologic and geomorphic factors that characterize the condition of the hillslope materials and channels following the fire, 2) examination of sedimentologic evidence for past debris-flow activity in the canyon, and 3) evaluation of the response of the watershed through the 1996 summer monsoon season. The lack of accumulations of dry-ravel material on the hillslopes or in channels, the absence of a continuous hydrophobic layer, the relatively intact condition of the riparian vegetation and of the fibrous root mat on the hillslopes, and the lack of evidence of widespread past debris- and hyperconcentrated-flow activity, even with evidence of past fires, indicate a low potential for debris-flow activity in Capulin Canyon. In addition, thunderstorms during the summer monsoon of 1996 resulted in abundant surface overland flow on the hillslopes which transported low-density pumice, charcoal, ash and some mineral soil downslope as small-scale and non-erosive debris flows. In some places cobble- and boulder-sized material was moved short distances. A moderate potential for debris- and hyperconcentrated-flow activity is identified for the two major tributary canyons to Capulin Canyon based on evidence of both summer of 1996 and possible historic significant debris-flow activity.

Open-File Report↗

USGS1996

Nymphal survival and habitat distribution of Ixodes scapularis and Amblyomma americanum ticks (Acari:Ixodidae) on Fire Island, New York

The distribution and survival of Ixodes scapularis and Amblyomma americanum were studied in deciduous and coniferous wooded habitats and in open habitats on Fire Island, New York, USA. The survival of nymphal I. scapularis in field enclosures was greater in forests than in open habitats, suggesting that greater survival contributes to the higher tick population in the woods. The nymphs of each species were more common in deciduous thickets (predominantly Aronia arbutifolia and Vaccinium corynbosum) than in coniferous woods (mostly Pinus rigida) in most but not all years. Larval I. scapularis were more common in coniferous sites in 1994, while the same ticks, as nymphs, were more common in deciduous sites in 1995. The survival of the nymphs was not consistently greater in either the deciduous or coniferous woods. Therefore, factors other than nymphal survival (e.g. larval overwintering survival and tick movement on hosts) probably influenced the relative nymph abundance in different forest types. Overall, the survival of A. americanum was far higher than that of I. scapularis.

Experimental and Applied Acarology↗

USGS2005

Increased salinization of fresh water in the Northeastern United States

Chloride concentrations are increasing at a rate that threatens the availability of fresh water in the northeastern United States. Increases in roadways and deicer use are now salinizing fresh waters, degrading habitat for aquatic organisms, and impacting large supplies of drinking water for humans throughout the region. We observed chloride concentrations of up to 25% of the concentration of seawater in streams of Maryland, New York, and New Hampshire during winters, and chloride concentrations remaining up to 100 times greater than unimpacted forest streams during summers. Mean annual chloride concentration increased as a function of impervious surface and exceeded tolerance for freshwater life in suburban and urban watersheds. Our analysis shows that if salinity were to continue to increase at its present rate due to changes in impervious surface coverage and current management practices, many surface waters in the northeastern United States would not be potable for human consumption and would become toxic to freshwater life within the next century. ?? 2005 by The National Academy of Sciences of the USA.

Proceedings of the National Academy of Sciences of↗

USGS2006

Trend analysis of time-series phenology of North America derived from satellite data

Remote sensing information has been used in studies of the seasonal dynamics (phenology) of the land surface since the 1980s. While our understanding of remote sensing phenology is still in development, it is regarded as a key to understanding land-surface processes over large areas. Phenologic metrics, including start of season, end of season, duration of season, and seasonally integrated greenness, were derived from 8 km advanced very high resolution radiometer (AVHRR) data over North America spanning the years 1982-2003. Trend analysis was performed on annual summaries of the metrics to determine areas with increasing or decreasing growing season trends for the time period under study. Results show a trend toward earlier starts of season in limited areas of the mixed boreal forest, and a trend toward later end of season in well-defined areas of New England and southeastern Canada. Results in Saskatchewan, Canada, include a trend toward longer duration of season over a well-defined area, principally as a result of regional changes in land use practices. Changing seasonality appears to be an integrated response to a complex of factors, including climate change, but also, in many places, changes in land use practices. Copyright ?? 2006 by V. H. Winston & Son, Inc. All rights reserved.

GIScience and Remote Sensing↗

USGS2015

Critical loads of atmospheric deposition to Adirondack lake watersheds: A guide for policymakers

Acid deposition is sometimes referred to as “acid rain,” although part of the acid load reaches the surface by means other than rainfall. In the eastern U.S., acid deposition consists of several forms of sulfur and nitrogen that largely originate as emissions to the atmosphere from sources such as electricity-generating facilities (coal, oil, and natural gas), diesel- and gasoline-burning vehicles, some agricultural activities, and smokestack industries. Acid deposition is known to cause deleterious effects to sensitive ecosystems of which the Adirondack region of New York State provides several well-known and well-studied examples. This largely forested region includes abundant lakes, streams, and wetlands and possesses several landscape features that result in high ecosystem sensitivity to acid deposition. These features include bedrock that weathers slowly, steep slopes, and thin, naturally acidic soils. An ecosystem is described as sensitive to, or affected by, acid deposition if prolonged exposure to acid deposition has resulted in detrimental ecosystem effects. Soils, streams, and lakes that are less sensitive are better able to buffer acid deposition. A principal reason that acidification is a concern for resource managers is because of the changes induced in native biota and their habitat on land and in water. As the chemistry of soils and surface waters in sensitive landscapes changes in response to prolonged exposure to acid deposition, organisms that cannot tolerate high acidity, such as sugar maple trees and many species of fish and aquatic insects, may be gradually eliminated from the ecosystem. Other biota such as red spruce may experience increased stress and reduced growth rates as a result of acidification, exposing these species to increased susceptibility to disease and other natural stressors and perhaps increased mortality. The ecological effects of acid deposition have been documented by extensive research that began in the U.S. in the 1970s and continues today. This report does not provide a detailed discussion of these ecological effects, but interested readers can refer to four publications that provide good summaries of current scientific knowledge of these effects, including extensive reference to previous research in the Adirondacks (Driscoll et al. 2001, Jenkins et al. 2007, Burns et al. 2011, Sullivan 2015).

New York↗

USGS2013

Effects of acidic deposition and soil acidification on sugar maple trees in the Adirondack Mountains, New York

This study documents the effects of acidic deposition and soil acid-base chemistry on the growth, regeneration, and canopy condition of sugar maple (SM) trees in the Adirondack Mountains of New York. Sugar maple is the dominant canopy species throughout much of the northern hardwood forest in the State. A field study was conducted in 2009 in which 50 study plots within 20 small Adirondack watersheds were sampled and evaluated for soil acid-base chemistry and SM growth, canopy condition, and regeneration. Atmospheric sulfur (S) and nitrogen (N) deposition were estimated for each plot. Trees growing on soils with poor acid-base chemistry (low exchangeable calcium and % base saturation) that receive relatively high levels of atmospheric S and N deposition exhibited little to no SM seedling regeneration, decreased canopy condition, and short-to long-term growth declines compared with study plots having better soil condition and lower levels of atmospheric deposition. These results suggest that the ecosystem services provided by SM in the western and central Adirondack Mountain region, including aesthetic, cultural, and monetary values, are at risk from ongoing soil acidification caused in large part by acidic deposition.

New York↗

USGS1996

Geologic Map of the Cascade Head Area, Northwestern Oregon Coast Range (Neskiwin, Nestucca Bay, Hebo, and Dolph 7.5 minute Quadrangles)

The geology of the Cascade Head area bridges the geology in the Tillamook Highlands to the north (Wells and others, 1994; 1995) with that of the Newport Embayment on the south (Snavely and others, 1976 a,b,c). The four 7.5-minute quadrangles (Neskowin, Nestucca Bay, Hebo, and Dolph) which comprise the Cascade Head area include significant stratigraphic, structural, and igneous data that are essential in unraveling the geology of the northern and central part of the Oregon Coast Range and of the adjacent continental shelf Earlier studies (Snavely and Vokes, 1949) were of a broad reconnaissance nature because of limited access in this rugged, densely forested part of the Siuslaw National Forest. Also, numerous thick sills of late middle Eocene diabase and middle Miocene basalt mask the Eocene stratigraphic relationships. Previous mapping was hampered by a lack of precise biostratigraphic data. However, recent advances in biostratigraphy and radiometric age dating and geochemistry have provided the necessary tools to decipher stratigraphic and structural relationships in the Eocene sedimentary and volcanic rock sequences (W.W. Rau, personal communication, 1978 to 1988; Bukry and Snavely, 1988). Many important stratigraphic and igneous relationships are displayed within the Casacde Head area: (1) turbidite sandstone of the middle Eocene Tyee Formation, which is widespread in the central and southern part of the Oregon Coast Range (Snavely and others, 1964), was not deposited in the western part of the Cascade Head, and is of limited extent north of the map area (Wells and others, 1994); (2) the late middle Eocene Yamhill Formation, which crops out along the west and east flank of the Oregon Coast Range, overlaps older strata and overlies an erosional unconformity on the lower Eocene Siletz River Volcanics (Snavely and others, 1990; 1991); (3) thick sills of late middle Eocene diabase (43 Ma) are widespread in the Cascade Head area and also form much of the eastern flank of the Tillamook Highlands (Wells and others, 1994), but are rare south of the map area; (4) Cascade Head is the northernmost eruptive center of late Eocene alkalic basalts--85 km north of the eruptive center of correlative alkalic flows of the Yachats Basalt in the Newport Embayment (Snavely and Vokes, 1949; Snavely and others, 1990; Barnes and Barnes, 1992; Davis and others, 1995); (5) early Oligocene (33 Ma) sills and dikes of nepheline syenite and camptonite present in the Newport Embayment (Snavely and Wagner, 1961) are not found in the Cascade Head area; (6) extensive middle Oligocene (30 Ma) granophyric gabbro sills that are widespread in the central part of the Oregon Coast Range (Snavely and Wagner, 1961; MacLeod, 1969) are not present in the Cascade Head area. The Cascade Head area is the last segment of the Oregon Coast to receive detailed geologic mapping. Increased logging operations in the 1970's and 1980's created numerous new roadcut exposures and access to exposures in stream beds. More importantly, microfossil biostratigraphic control, available since 1970, based upon foraminifer determinations by W.W. Rau and nannofossil determinations by David Bukry provided critical information on stratigraphic succession as well as on depositional environments of the deep water (bathyal) siltstone units present in much of the Cascade Head area. These paleontologic data also permitted correlations with other sedimentary sequences mapped in the Newport Embayment and in the Tillamook Highlands as well as in western Washington. New 7.5-minute topographic maps and aerial photographs which became available in the late 1980's provided detailed topography which can be related to the distribution of thick sills and broad landslide areas, as well as a precise geographic relationship of geologic observations in this densely forested and brush-covered terrain. New geographic information systems (GIS) technology has produced a digitized color map of the Cascade Head area that combines the four 7.5-minute quadrangles that previously were open-filed as separate black and white 7.5-minute quadrangles (Snavely and others, 1990; 1990a; 1991; 1993). The tectonic framework and stratigraphic architecture presented on the map of the Cascade Head area was obtained by classic geologic field methods. This information could have been obtained only through detailed observation and sampling along stream beds, road cuts, and outcrops. Remote sensing techniques were of minor help in unraveling the geology in this poorly exposed and complex terrain, a terrain that characterizes much of the Oregon and Washington Coast Ranges.

Oregon↗

USGS2019

The response of kelp forest organisms to spatial and temporal variation in wave energy in the California Channel Islands

This report describes the spatial and temporal variation in wave height for the study system in the broader context of the Southern California Bight. A new, low-cost pressure sensor was engineered for measuring wave height and period. These sensors were placed for several months at 32 sites around the Channel Islands where long-term kelp forest monitoring occurs. Matching sensor data with CDIP wave hindcasts made it possible to correct the CDIP model hindcast to make it applicable to nearshore sites in this region. With these corrections, annual wave energy was estimated for 88 sites where long term biotic monitoring had been conducted in the study region. These data were analyzed to assess the extent that wave energy affects species abundances and, in particular, how a reduction in wave height would affect various species.

California↗

USGS2013

Genetic structuring of northern myotis (Myotis septentrionalis) at multiple spatial scales

Although groups of bats may be genetically distinguishable at large spatial scales, the effects of forest disturbances, particularly permanent land use conversions on fine-scale population structure and gene flow of summer aggregations of philopatric bat species are less clear. We genotyped and analyzed variation at 10 nuclear DNA microsatellite markers in 182 individuals of the forest-dwelling northern myotis ( Myotis septentrionalis ) at multiple spatial scales, from within first-order watersheds scaling up to larger regional areas in West Virginia and New York. Our results indicate that groups of northern myotis were genetically indistinguishable at any spatial scale we considered, and the collective population maintained high genetic diversity. It is likely that the ability to migrate, exploit small forest patches, and use networks of mating sites located throughout the Appalachian Mountains, Interior Highlands, and elsewhere in the hibernation range have allowed northern myotis to maintain high genetic diversity and gene flow regardless of forest disturbances at local and regional spatial scales. A consequence of maintaining high gene flow might be the potential to minimize genetic founder effects following population declines caused currently by the enzootic White-nose Syndrome.

Acta Theriologica↗

USGS2010

A summary of information on the rust Puccinia psidii Winter (guava rust) with emphasis on means to prevent introduction of additional strains to Hawaii

The neotropical rust fungus Puccinia psidii ( P. psidii ) was originally described from the host common guava in its native Brazil but has been found since on hosts throughout the myrtle family (Myrtaceae), including a dramatic host jump to nonnative Eucalyptus plantations. Most rust fungi are able to live only on a very narrow range of host species. P. psidii is unusual both for having a broad host range and for the intensity of its damage to susceptible young growth. This rust first got a foothold in the United States in Florida more than three decades ago. The U.S. Department of Agriculture (USDA) has since considered it a nonactionable, nonreportable pest. Hawaii and Florida are the only two states with native species in the myrtle family. Over a period of 30 years, this rust has done little damage to any of the scattered native Myrtaceae in Florida, although the host range of the rust has gradually grown to about 30 mostly nonnative species in the family, apparently because of increasing genetic variety of the rust by repeated introductions. However, Florida’s native Myrtaceae are among the roughly 1,100 neotropical species that are largely resistant to P. psidii . The 3,000 species of non-neotropical Myrtaceae of the Pacific, Australia, Asia, and Africa are expected to prove much more vulnerable to P. psidii . Little is known about the genetics or genetic strains of P. psidii , although existing literature shows that there are numerous strains that have differential ability to infect suites of host plants. The rust was first recorded in the state of Hawaii on Oahu in April 2005 and quickly spread throughout the Hawaiian Islands. The main concern in Hawaii became the potential threat to ohia, Metrosideros polymorpha (Myrtaceae), the endemic forest tree species overwhelmingly important in Hawaii’s nature and culture. The potential ecological consequences of a virulent strain of rust on ohia forests are immense, due to its role as a foundation tree species and the diversity of niches it fills in Hawaii. A single genetic strain of the rust is established in Hawaii, apparently composed of a single genotype lacking sexual reproduction. P. psidii has been found statewide in Hawaii attacking Myrtaceae from near sea level to about 1,200 m elevation in areas with rainfall ranging from 750–5,000 mm. Five of eight native Myrtaceae and at least 15 nonnative species have been observed as hosts of P. psidii in Hawaii. The federally endangered Eugenia koolauensis (nioi) and the nonendangered indigenous species Eugenia reinwardtiana are severely damaged. The introduced (an Asian species) and invasive rose apple, Syzygium jambos , is severely affected at a landscape scale, with widespread crown dieback and many instances of complete tree death. In spite of billions of wind-dispersed rust spores produced from rose apple infestations during 2006 to 2008, adjacent ohia have been little affected to date by the rust strain in Hawaii. Within the elevation range of the rust, P. psidii is found on less than 5 percent of the ohia trees in the wild; on those ohia trees on which the rust is found, it is normally found on less than 5 percent of the leaves. The strain in Hawaii has not attacked many of the species known to be infected by the rust elsewhere, including common guava. On the basis of the very substantial genetic diversity of the much-studied, crop-damaging species of the genus Puccinia , there is good reason to believe that there are at minimum dozens and likely hundreds or thousands of genotypes of P. psidii , likely concentrated in the core range in Brazil but with potential for dispersal by globalization. Multiple genotypes are believed already present in the United States and certain to spread freely in the absence of restrictions. The U.S. Forest Service has initiated a major collaborative project in Brazil to investigate the genetics of susceptibility of Hawaii’s ohia to P. psidii , but initial results will likely not be available for several years. If just one more strain reaches Hawaii, the consequences could be dire for ohia, with each new genotype arriving having an unknown likelihood of increasing damage to ohia; possibilities for mutation and (or) genetic mixing, even with asexual strains, are apparently substantial, based on what is known about other Puccinia species. Investigations are needed to clarify rust-nioi relationships. However, it is likely that keeping out new strains of P. psidii may be important for long-term survival of nioi as well as for the health of ohia forest. The source of Hawaii’s initial invasion by P. psidii is uncertain but is strongly suspected to have been decorative foliage of species in the myrtle family from the mainland United States, most likely California, where there had been outbreaks of this rust on cultivated myrtle in 2005. In 2006–7, Maui’s Hawaii Department of Agriculture (HDOA) inspectors intercepted several P. psidii infected shipments of foliage myrtle, shipped from several California counties. Recognizing the huge threat of the rust to Hawaii’s one million acres of ohia forests, and consequently to Hawaii’s watersheds and biodiversity, Hawaii’s Board of Agriculture unanimously approved an interim rule in August 2007 banning importation of plants in the myrtle family from “infested areas,” specified as South America, Florida, and California. However, the interim rule has not been made permanent by HDOA, and the department has stated that it needs further information to formulate a long-term rule that imposes appropriate measures. Rust spores can survive for 2 to 3 months, and the pathogen can be transported to Hawaii on Myrtaceae from anywhere in the world through the United States mainland. There is much geographic reshuffling of flowers and foliage among the far-flung firms in the trade, especially for bouquet making. Because P. psidii is a nonactionable and nonreportable pest in the United States, foliage and flowers of the myrtle family can move freely into the country (usually but not necessarily always through the ports of Miami or Los Angeles), and from state to state. Currently, the State of Hawaii regulates incoming plant material in the family Myrtaceae by visual inspection. Inspection capacity and latent (asymptomatic) infections limit the ability to detect the rust. New molecular tests could improve detection efficiency, but the cost and the time required to process samples currently precludes their routine use in ports of entry. Interdiction, which has effectively kept coffee rust ( Hemileia vastatrix ) out of Hawaii for 120 years, offers the strongest protection for Hawaii’s native ecosystems from P. psidii . Interdiction of Myrtaceae from the continental United States could have the important supplementary benefit of preventing establishment in Hawaii of other very significant pests of multiple species of Myrtaceae that are already in the country, including: the Eugenia psyllid Trioza eugeniae (Hemiptera: Psyllidae); Chrysophtharta m-fuscum , the Eucalyptus tortoise beetle (Coleoptera: Chrysomelidae); Leptocybe invasa , the blue gum chalcid wasp (Hymenoptera: Chalcidae); and the fungal pathogens Mycosphaerella molleriana (Ascomycota: Mycosphaerelliaceae, crinkle leaf disease of Eucalyptus spp.) and Neofusicoccum parvum (Ascomycota: Botryosphaeriaceae), currently causing serious damage to Syzygium paniculatum in south Florida nurseries. Each of these pests would be likely to cause very significant damage to native and (or) cultivated Myrtaceae in Hawaii. Each of these pests is a prime candidate for transport by the foliage and (or) nursery stock pathways from Florida and California into Hawaii. Hawaii Department of Agriculture has a clear mandate to protect Hawaii’s natural environment, forestry and cultivated Myrtaceae. Principles of the World Trade Organization’s Treaty on Sanitary and Phytosanitary Measures and the International Plant Protection Convention are consistent with the right of Hawaii to take action. The current threat of P. psidii and the other five serious threats to Myrtaceae are primarily posed by the importation of infected plants from the continental United States; however, that may change in the future. If Hawaii were to decide to take a stand (through State regulation) to protect its native and introduced Myrtaceae, there is a possibility that USDA would consider Federal regulation of Myrtaceae from foreign countries.

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