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Developing enterprise tools and capacities for large-scale natural resource monitoring: A visioning workshop

In October 2016, the U.S. Geological Survey (USGS), in collaboration with the Pacific Northwest Aquatic Monitoring Partnership (PNAMP, www.pnamp.org), convened a 30-person workshop, https://www.pnamp.org/event/5509, to identify and prioritize development of enterprise systems for programs that monitor the status and trends of species populations and their terrestrial, aquatic, and marine habitats. Participants included representatives from federal natural resource research and land management organizations and nongovernmental organizations that manage natural resource monitoring programs. Objectives of the workshop were: 1) identify resources that support natural resource monitoring programs working across the data life cycle; 2) prioritize desired capacities and tools to facilitate monitoring design and implementation; 3) identify standards and best practices that improve discovery, accessibility, and interoperability of data across programs and jurisdictions; and 4) contribute to an emerging community of practice focused on natural resource monitoring.

Report

Oxygen isotopes of dissolved sulfate as a tool to distinguish natural and mining-related dissolved constituents

Natural and mining-related dissolved-constituent concentrations need to be distinguished in a watershed affected by abandoned mines to prioritize subbasins for remediation and to assist with the establishment of water-quality standards. The oxygen isotopes of dissolved sulfate can be used to distinguish between natural and mining-related sources of dissolved constituents. Several methods employing the oxygen isotopes of dissolved sulfate can be used to determine the relative amounts of natural and mining related dissolved constituents in water: (1) the isotope-dilution equation for simple mixing zones (two sources and one receiving stream); (2) the isotope mass-balance equation for streams receiving dissolved sulfate from multiple geologic sources; and (3) graphical relations and the mathematical solution of simultaneous equations in a watershed approach. Using the different methods for data collected during low flow, about 71 to 75 percent of the dissolved-constituent concentrations are from natural sources in selected subbasins of the upper Animas watershed.

Open File Report

Survival and growth of bottomland hardwood seedlings and natural woody invaders near forest edges

Several oak species are frequently planted for reforestation projects in the Lower Mississippi Alluvial Valley (LMAV), but the success of these plantings has been variable. The survival and growth of planted seed or seedlings are affected by a variety of factors, including competition, herbivory, site preparation, precipitation, planting stock quality, and planting techniques. We surveyed reforested fields in the LMAV to examine survival and growth of planted oaks and the occurrence of natural invaders that became established in these fields. Oak ( Quercus spp.) densities averaged 413 stems per ha within 150 m of forest edges, as compared with 484 stems per ha between 150 to 300 m from the forest edge. Also there were higher densities of natural woody invaders near forest edges (4,234 stems per ha at 0 - 150 m compared with 2,193 stems per ha at 150-300 m). These data show that seed and seedlings proximity to a nearby forest edge has an effect on survival and growth. Since planted trees in the 0 – 150 m forest edge zone encounter high densities of natural invaders, it may be prudent to reduce the number of planted trees. Naturally occurring invaders enhance diversity and also augment depleted oak plantings near the forest edge with no added expense or effort.

Arkansas, Louisiana, Mississippi

Decision analysis for managing public natural resources

Examples like the Grand Canyon story are becoming more common—agencies and stakeholders are increasingly using decision tools to help navigate complex decisions regarding natural resources. Several books and many papers have made the case for the use of decision analysis in natural resource management settings and have described the tools available (Conroy and Peterson 2013; Gregory et al. 2012; Williams et al. 2002), but only a few applications have been described. Thus, many agencies understand why decision analysis is valuable, but wonder how to implement it. The primary purpose of this book is to show what decision analysis looks like in practice for natural resource management, as a means to guide decision makers in adopting these practices to improve the achievement of their objectives. To this end, the collected case studies in this book, all real natural resource management decisions, were chosen with three objectives in mind: (1) to demonstrate how structuring decisions can render them more tractable; (2) to illustrate the diversity of decision analysis tools useful at various stages of the structuring process; and (3) to provide guidance on how decision analysis processes can be carried out in public environmental institutions.

Book chapter

Categorizing natural disaster damage assessment using satellite-based geospatial techniques

Remote sensing of a natural disaster's damage offers an exciting backup and/or alternative to traditional means of on-site damage assessment. Although necessary for complete assessment of damage areas, ground-based damage surveys conducted in the aftermath of natural hazard passage can sometimes be potentially complicated due to on-site difficulties (e.g., interaction with various authorities and emergency services) and hazards (e.g., downed power lines, gas lines, etc.), the need for rapid mobilization (particularly for remote locations), and the increasing cost of rapid physical transportation of manpower and equipment. Satellite image analysis, because of its global ubiquity, its ability for repeated independent analysis, and, as we demonstrate here, its ability to verify on-site damage assessment provides an interesting new perspective and investigative aide to researchers. Using one of the strongest tornado events in US history, the 3 May 1999 Oklahoma City Tornado, as a case example, we digitized the tornado damage path and co-registered the damage path using pre- and post-Landsat Thematic Mapper image data to perform a damage assessment. We employed several geospatial approaches, specifically the Getis index, Geary's C , and two lacunarity approaches to categorize damage characteristics according to the original Fujita tornado damage scale (F-scale). Our results indicate strong relationships between spatial indices computed within a local window and tornado F-scale damage categories identified through the ground survey. Consequently, linear regression models, even incorporating just a single band, appear effective in identifying F-scale damage categories using satellite imagery. This study demonstrates that satellite-based geospatial techniques can effectively add spatial perspectives to natural disaster damages, and in particular for this case study, tornado damages.

Natural Hazards and Earth System Sciences

Natural and unnatural oil slicks in the Gulf of Mexico

When wind speeds are 2 &ndash; 10 m s &minus;1 , reflective contrasts in the ocean surface make oil slicks visible to synthetic aperture radar (SAR) under all sky conditions. Neural network analysis of satellite SAR images quantified the magnitude and distribution of surface oil in the Gulf of Mexico from persistent, natural seeps and from the Deepwater Horizon (DWH) discharge. This analysis identified 914 natural oil seep zones across the entire Gulf of Mexico in pre-2010 data. Their &sim;0.1 &micro;m slicks covered an aggregated average of 775 km 2 . Assuming an average volume of 77.5 m 3 over an 8 &ndash; 24 h lifespan per oil slick, the floating oil indicates a surface flux of 2.5 &ndash; 9.4 &times; 10 4 m 3 y &minus;1 . Oil from natural slicks was regionally concentrated: 68%, 25%, 7%, and <1% of the total was observed in the NW, SW, NE and SE Gulf, respectively. This reflects differences in basin history and hydrocarbon generation. SAR images from 2010 showed that the 87-day DWH discharge produced a surface-oil footprint fundamentally different from background seepage, with an average ocean area of 11,200 km 2 (SD 5,028) and a volume of 22,600 m 3 (SD 5,411). Peak magnitudes of oil were detected during equivalent, &sim;14-day intervals around 23 May and 18 June, when wind speeds remained <5 m s &minus;1 . Over this interval, aggregated volume of floating oil decreased by 21%; area covered increased by 49% ( p &thinsp;<&thinsp;.1), potentially altering its ecological impact. The most likely causes were increased applications of dispersant and surface burning operations.

Journal of Geophysical Research C: Oceans

Writing SMART objectives for natural resource and environmental management

In natural resource and environmental management, well-written objectives are critical for effective decision-making and the achievement of desired outcomes. This article aims to improve practitioners' ability to identify and write SMART ( S pecific, M easurable, A chievable, R elevant, T ime-bound) objectives for natural resource and environmental management. We differentiate between research and management objectives, define each SMART criterion, and introduce a template to help write management objectives. We demonstrate the use of the SMART management objectives template with a hypothetical example and two recent applications. The template simplifies the process of writing SMART management objectives. It is applicable to popular management frameworks like management by objectives and structured decision making. The implementation of SMART criteria and the provided template can lead to better outcomes in natural resource and environmental management, benefiting current and future generations.

Ecological Solutions and Evidence

Sharing land via keystone structure: Retaining naturally regenerated trees may efficiently benefit birds in plantations

Meeting food/wood demands with increasing human population and per-capita consumption is a pressing conservation issue, and is often framed as a choice between land sparing and land sharing. Although most empirical studies comparing the efficacy of land sparing and sharing supported land sparing, land sharing may be more efficient if its performance is tested by rigorous experimental design and habitat structures providing crucial resources for various species––keystone structures––are clearly involved. We launched a manipulative experiment to retain naturally regenerated broad-leaved trees when harvesting conifer plantations in central Hokkaido, northern Japan. We surveyed birds in harvested treatments, unharvested plantation controls and natural forest references one-year before the harvest and for three consecutive post-harvest years. We developed a hierarchical community model separating abundance and space-use (territorial proportion overlapping treatment plots) subject to imperfect detection to assess population consequences of retention harvesting. Application of the model to our data showed that retaining some broad-leaved trees increased total abundance of forest birds over the harvest rotation cycle. Specifically, pre-harvest survey showed that the amount of broad-leaved trees increased forest bird abundance in a concave manner (i.e., in a form of diminishing-return). After harvesting, a small amount of retained broad-leaved trees mitigated negative harvesting impacts on abundance though retention harvesting reduced the space-use. Nevertheless, positive retention effects on the post-harvest bird density as the product of abundance and space-use exhibited a concave form. Thus, small profit reductions were shown to yield large increases in forest bird abundance. The difference in bird abundance between clear-cutting and low amounts of broad-leaved tree retention increased slightly from the first to second post-harvesting years. We conclude that retaining a small amount of broad-leaved trees may be a cost-effective on-site conservation approach for the management of conifer plantations. Retention of 20-30 broad-leaved trees per ha may be sufficient to maintain higher forest bird abundance than clear-cutting over the rotation cycle. Retention approaches can be incorporated into management systems using certification schemes and best management practices. Developing an awareness of the roles and values of naturally regenerated trees is needed to diversify plantations.

Ecological Applications

Native fish need a natural flow regime

Water development has threatened the ecological integrity of riverine ecosystems. Increasing water demand, persistent drought, and climate change exacerbate the effects of habitat degradation and loss in altered systems such as the Colorado River basin. Today, biologists are challenged to identify management actions that benefit native fishes while not hindering water development or management. Herein, we discuss the importance of the natural flow regime for functioning riverine ecosystems and provide examples from four tributaries to the Green River, a major headwater branch of the Colorado River. These tributaries represent a gradient of impacts ranging from water abstraction to the point of complete seasonal desiccation to a relatively natural flow regime, and consequently have maintained different levels of instream habitat complexity and native fish persistence. Despite decades of management, endangered species lack self-sustaining populations and other native species have been extirpated from over half their ranges, which begs the question: can water development and fish conservation be balanced under current water laws and climate change-driven declines in runoff? Given the continued decline in freshwater biodiversity and abundance occurring across the globe, we contend that immediate designation of rivers with natural flow regimes as freshwater conservation areas will enhance native species recovery.

Arizona, Colorado, Utah, Wyoming

Application of the technology readiness levels framework to natural resource management tools

Technology advancements in fisheries science can provide useful tools to support natural resource management and conservation. However, new technologies may also present challenges for decision makers due to the lack of a standardized process to assess technologies for consideration within management plans. Future technology development in fishery and water resources could benefit from a framework that assigns an appropriate technology development stage and defines the readiness for implementation. Technology Readiness Levels (TRL) are one established research and development scale used throughout engineering and related disciplines that could be applied to natural resource management tools. The TRL assess the maturity of a technology from nascent idea through a fully developed technology. Steps within this scale could provide a general framework for researchers to follow when planning and conducting studies, while similarly providing a standard scale for resource managers to assess readiness for technology transfer and implementation. The goal of this paper is to describe TRL in the context of natural resource management tools and offer this existing framework as one option to facilitate communication between researchers and managers.

Fisheries

Natural climate variability and teleconnections to precipitation over the Pacific-North American region in CMIP3 and CMIP5 models

Natural climate variability will continue to be an important aspect of future regional climate even in the midst of long-term secular changes. Consequently, the ability of climate models to simulate major natural modes of variability and their teleconnections provides important context for the interpretation and use of climate change projections. Comparisons reported here indicate that the CMIP5 generation of global climate models shows significant improvements in simulations of key Pacific climate mode and their teleconnections to North America compared to earlier CMIP3 simulations. The performance of 14 models with simulations in both the CMIP3 and CMIP5 archives are assessed using singular value decomposition analysis of simulated and observed winter Pacific sea surface temperatures (SSTs) and concurrent precipitation over the contiguous United States and northwestern Mexico. Most of the models reproduce basic features of the key natural mode and their teleconnections, albeit with notable regional deviations from observations in both SST and precipitation. Increasing horizontal resolution in the CMIP5 simulations is an important, but not a necessary, factor in the improvement from CMIP3 to CMIP5.

Geophysical Research Letters

Climate change, uncertainty, and natural resource management

Climate change and its associated uncertainties are of concern to natural resource managers. Although aspects of climate change may be novel (e.g., system change and nonstationarity), natural resource managers have long dealt with uncertainties and have developed corresponding approaches to decision-making. Adaptive resource management is an application of structured decision-making for recurrent decision problems with uncertainty, focusing on management objectives, and the reduction of uncertainty over time. We identified 4 types of uncertainty that characterize problems in natural resource management. We examined ways in which climate change is expected to exacerbate these uncertainties, as well as potential approaches to dealing with them. As a case study, we examined North American waterfowl harvest management and considered problems anticipated to result from climate change and potential solutions. Despite challenges expected to accompany the use of adaptive resource management to address problems associated with climate change, we conclude that adaptive resource management approaches will be the methods of choice for managers trying to deal with the uncertainties of climate change. ?? 2010 The Wildlife Society.

Journal of Wildlife Management

Responses of hatchery‐ and natural‐origin adult spring Chinook Salmon to a trap‐and‐haul reintroduction program

The construction of impassable dams severely affected many Pacific salmon Oncorhynchus spp. populations, resulting in reintroduction efforts that are now focused on returning anadromous fish to areas located upstream of these dams. A primary strategy for moving adult salmon and steelhead O. mykiss around a dam or multiple dams involves trapping fish downstream and transporting them to upstream areas (“trap and haul”) for spawning. We conducted a 4‐year radiotelemetry study to evaluate behavior and movement patterns of hatchery‐ and natural‐origin adult spring Chinook Salmon O. tshawytscha after a trap‐and‐haul program was implemented around three dams on the Cowlitz River, Washington. A multistate model was used to describe how factors such as origin, sex, release site location, and discharge affected transition rates to riverine areas where spawning habitat was located. Natural‐origin Chinook Salmon moved upstream from a reservoir release site and entered one of two rivers more quickly and in greater proportions than hatchery‐origin fish. Results from the multistate model indicated that transition rates from the reservoir to the Cowlitz River were 2.2 times higher for natural‐origin Chinook Salmon than for hatchery‐origin fish. About one‐half (49.6%) of the reservoir‐released hatchery‐origin Chinook Salmon moved upstream into the Cowlitz River or the Cispus River during the spawning period. The release of hatchery‐origin Chinook Salmon directly into these rivers increased the percentage of fish with river fates during the spawning period to 72.3–75.4%. Results from the multistate model showed that factors such as release site location, origin, day of year, and discharge were important predictors of transition intensities between specific locations in the study area. These findings illustrate the need to evaluate how salmon and steelhead respond to trap‐and‐haul methods, allowing for better management of reintroduction efforts in the future.

Washington

Estimates of adult Lake Trout mortality from coded wire tags in a population with developing natural reproduction in southern Lake Michigan

Objective Overfishing and Sea Lamprey Petromyzon marinus predation led to extirpation of Lake Trout Salvelinus namaycush from Lake Michigan in the 1950s. Large populations of hatchery‐reared fish were developed by the 1970s, but natural reproduction was limited until the early 2000s when it began to increase in the southern main basin. Hypothesizing that the relatively low mortality of spawning‐aged fish contributed to this reproductive success, we estimated the total annual mortality rate for this population. Methods We used catch curves to estimate the total instantaneous mortality rate Z using coded wire tags, which provided definitive ages. We made separate estimates from fish collected in three on‐going surveys: a spring gill‐net survey, a fall gill‐net spawning survey, and a sport fishery survey. Result Our estimates of Z ± SE were 0.297 ± 0.019, 0.239 ± 0.009, and 0.205 ± 0.007 for the spring, spawning, and sport fishery surveys, respectively. We suggest that the mean Z ± SE of all survey estimates of 0.247 ± 0.027 would be a reasonable estimate for this population, which equates to a total annual mortality of 22 ± 3%. This estimate is in the low range of rates reported for the species and is in the same range as other populations in the Great Lakes with well‐established natural reproduction. Conclusion We concluded that these low total mortality rates contributed to the reproductive success in southern Lake Michigan through increasing spawning stock density and age structure and that previous estimates of another important population parameter, the instantaneous natural mortality rate M , were too high. Estimates of M ranged from 0.210 to 0.240 and were based on the Pauly equation, a growth‐ and temperature‐based estimator. We suggest maximum‐age‐based estimators of M are more appropriate for Lake Trout. Several alternative maximum‐age‐based estimators produced estimates for M of 0.132–0.058, all of which are more compatible with our estimate of Z .

Lake Michigan

The catastrophic decline of tortoises at a fenced natural area

Agassiz’s desert tortoise ( Gopherus agassizii ), a threatened species of the southwestern United States, has severely declined to the point where 76% of populations in critical habitat (Tortoise Conservation Areas) are below viability. The potential for rapid recovery of wild populations is low because females require 12–20 years to reach reproductive maturity and produce few eggs annually. We report on a 34‐year mark‐recapture study of tortoises initiated in 1979 at the Desert Tortoise Research Natural Area in the western Mojave Desert, California, USA, and provide substantive data on challenges faced by the species. In 1980, the United States Congress designated the Research Natural Area and protected the land from recreational vehicles, livestock grazing, and mining with a wildlife‐permeable fence. The 7.77‐km 2 study area, centered on interpretive facilities, included land both within the Natural Area and outside the fence. We expected greater benefits to accrue to the tortoises and habitat inside compared to outside. Our objectives were to conduct a demographic study, analyze and model changes in the tortoise population and habitat, and compare the effectiveness of fencing to protect populations and habitat inside the fence versus outside, where populations and habitat were unprotected. We conducted surveys in spring in each of 7 survey years from 1979, when the fence was under construction, through 2012. We compared populations inside to those outside the fence by survey year for changes in distribution, structure by size and relative age, sex ratios, death rates of adults, and causes of death for all sizes of tortoises. We used a Bayesian implementation of a Jolly Seber model for mark‐recapture data. We modeled detection, density, growth and transition of tortoises to larger size‐age classes, movements from inside the protective fence to outside and vice versa, and survival. After the second and subsequent survey years, we added surveys to monitor vegetation and habitat changes, conduct health assessments, and collect data on counts of predators and predator sign. At the beginning of the study, counts and densities for all sizes of tortoises were high, but densities were approximately 24% higher inside the fence than outside. By 2002, the low point in densities, densities had declined 90% inside the fence and 95% outside. Between 2002 and 2012, the population inside the fence showed signs of improving with a 54% increase in density. Outside the fence, densities remained low. At the end of the study, when we considered the initial differences in location, densities inside the fence were roughly 2.5 times higher than outside. The pattern of densities was similar for male and female adults. When evaluating survival by blocks of years, survivorship was higher in 1979–1989 than in 1989–2002 (the low point) and highest from 2002 to 2012. Recruitment and survival of adult females into the population was important for growing the population, but survival of all sizes, including juveniles, was also critical.

California

Value of information and natural resources decision-making

Though the potential for information to measurably improve management has been highlighted for several decades, in recent years the &ldquo;value of information&rdquo; has surfaced with increasing frequency in natural resources. However, the use of this phrase belies the fact that many in natural resources have only a limited understanding about what it actually means, how to measure it, and what to do with it. We introduce and describe several forms of the value of information in a context of the management of renewable natural resources. The value of information is discussed in terms of a potential gain in value with the addition of new information, as well as a loss in value associated with the absence of information. Value metrics are developed for uncertainty about resource status as well as resource processes and responses to management. We provide a common notation for the metrics of value, and discuss linkages of the value of information to strategic approaches such as adaptive resources management and partially observable decision processes.

Wildlife Society Bulletin

Threshold concepts: implications for the management of natural resources

Threshold concepts can have broad relevance in natural resource management. However, the concept of ecological thresholds has not been widely incorporated or adopted in management goals. This largely stems from the uncertainty revolving around threshold levels and the post hoc analyses that have generally been used to identify them. Natural resource managers have a need for new tools and approaches that will help them assess the existence and detection of conditions that demand management actions. Recognition of additional threshold concepts include: utility thresholds (which are based on human values about ecological systems) and decision thresholds (which reflect management objectives and values and include ecological knowledge about a system) as well as ecological thresholds. All of these concepts provide a framework for considering the use of threshold concepts in natural resource decision making.

Book chapter

Using natural range of variation to set decision thresholds: a case study for great plains grasslands

Natural range of variation (NRV) may be used to establish decision thresholds or action assessment points when ecological thresholds are either unknown or do not exist for attributes of interest in a managed ecosystem. The process for estimating NRV involves identifying spatial and temporal scales that adequately capture the heterogeneity of the ecosystem; compiling data for the attributes of interest via study of historic records, analysis and interpretation of proxy records, modeling, space-for-time substitutions, or analysis of long-term monitoring data; and quantifying the NRV from those data. At least 19 National Park Service (NPS) units in North America’s Great Plains are monitoring plant species richness and evenness as indicators of vegetation integrity in native grasslands, but little information on natural, temporal variability of these indicators is available. In this case study, we use six long-term vegetation monitoring datasets to quantify the temporal variability of these attributes in reference conditions for a variety of Great Plains grassland types, and then illustrate the implications of using different NRVs based on these quantities for setting management decision thresholds. Temporal variability of richness (as measured by the coefficient of variation, CV) is fairly consistent across the wide variety of conditions occurring in Colorado shortgrass prairie to Minnesota tallgrass sand savanna (CV 0.20–0.45) and generally less than that of production at the same sites. Temporal variability of evenness spans a greater range of CV than richness, and it is greater than that of production in some sites but less in other sites. This natural temporal variability may mask undesirable changes in Great Plains grasslands vegetation. Consequently, we suggest that managers consider using a relatively narrow NRV (interquartile range of all richness or evenness values observed in reference conditions) for designating a surveillance threshold, at which greater attention to the situation would be paid, and a broader NRV for designating management thresholds, at which action would be instigated.

Book chapter