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USGS1980

Conflict resolution in railroad right-of-way disputes; Columbia, Missouri, and Douglas County, Nebraska

The environmental mediation process has been used to avoid potential disputes and to resolve conflicts once an impasse has been reached. One successful case of dispute avoidance was in the conversion of an abandoned railroad right-of-way to a linear park in Columbia, Missouri. The potential disputes in this case were twofold: the first centered on the question of ownership of the right-of-way where the railroad holds easements; the second was the issue of how the right-of-way would be developed. This second issue was addressed through the use of third party assistance. A member of the American Arbitration Association and a member of the Heritage Conservation and Recreation Service acted as an outside third party to facilitate negotiations between the city and adjacent landowners. The result of these negotiations is that the proposal to convert the right-of-way to a linear park has met with acceptance and the project to acquire the land is progressing. In a similar case in Douglas County, Nebraska, third party assistance was not employed and an impasse resulted. Plans to convert the railroad right-of-way have been terminated.

Missouri, Nebraska↗

USGS2011

Hormesis associated with a low dose of methylmercury injected into mallard eggs

We injected mallard ( Anas platyrhynchos ) eggs with methylmercury chloride at doses of 0, 0.05, 0.1, 0.2, 0.4, 0.8, 1.6, 3.2, and 6.4 μg mercury/g egg contents on a wet-weight basis. A case of hormesis seemed to occur because hatching success of eggs injected with 0.05 μg/g mercury (the lowest dose) was significantly greater (93.3%) than that of controls (72.6%), whereas hatching success decreased at progressively greater doses of mercury. Our finding of hormesis when a low dose of methylmercury was injected into eggs agrees with a similar observation in a study in which a group of female mallards was fed a low dietary concentration of methylmercury and hatching of their eggs was significantly better than that of controls. If methylmercury has a hormetic effect at low concentrations in avian eggs, these low concentrations may be important in a regulatory sense in that they may represent a no-observed adverse effect level (NOAEL).

Archives of Environmental Contamination and Toxico↗

USGS2009

Ultraviolet absorbance as a proxy for total dissolved mercury in streams

Stream water samples were collected over a range of hydrologic and seasonal conditions at three forested watersheds in the northeastern USA. Samples were analyzed for dissolved total mercury (THg d ), DOC concentration and DOC composition, and UV 254 absorbance across the three sites over different seasons and flow conditions. Pooling data from all sites, we found a strong positive correlation of THg d to DOC (r 2 = 0.87), but progressively stronger correlations of THg d with the hydrophobic acid fraction (HPOA) of DOC (r 2 = 0.91) and with UV 254 absorbance (r 2 = 0.92). The strength of the UV 254 absorbance-THg d relationship suggests that optical properties associated with dissolved organic matter may be excellent proxies for THg d concentration in these streams. Ease of sample collection and analysis, the potential application of in-situ optical sensors, and the possibility for intensive monitoring over the hydrograph make this an effective, inexpensive approach to estimate THg d flux in drainage waters.

Environmental Pollution↗

USGS2019

Contemporary environmental assessment using a viability analysis in a large river system to inform restoration and adaptive management decisions

As large-scale restoration plans for degraded aquatic habitats evolve, it is essential that multiorganizational collaborations have a common vision to achieve consensus on restoration goals. Development of restoration targets and postrestoration monitoring strategies can be focused using a viability analysis framework that supports an adaptive management process. Viability analysis is a robust and accommodating framework, adaptable to any restoration monitoring program and, through the determination of common desired endpoints, can aid consensus building and collaboration across jurisdictional boundaries. In the St. Clair-Detroit River System, which is the Great Lakes connecting channel between southern Lake Huron and western Lake Erie, a viability analysis framework was used to evaluate environmental parameters associated with fisheries and aquatic restoration efforts and to gauge the overall health of the aquatic environment. Steps to derive the viability analysis were as follows: (1) establishing meaningful baseline metrics, (2) identifying information deficiencies, and (3) placing the context of current conditions into a usable format for managers and practitioners. Most geographic segments were designated in overall fair condition, and the conservation targets were designated in either good or fair condition, based on available assessed indicators. Many indicators were unable to be assessed or assigned condition status, which identified research and monitoring data gaps. Metrics associated with native migratory fishes, Lake St. Clair, and islands are generally in better condition than metrics associated with the coastal terrestrial systems, aerial migrants, and coastal wetlands. These results were not unexpected given the highly urbanized landscape of the St. Clair-Detroit River System. Resource managers in the corridor can use these results to identify knowledge gaps, research and restoration priorities, and to assess progress towards meeting restoration goals.

Michigan, Ontario↗

USGS2001

Guidelines for the field evaluation of desert tortoise health and disease

Field evaluation of free-ranging wildlife requires the systematic documentation of a variety of environmental conditions and individual parameters of health and disease, particularly in the case of rare or endangered species. In addition, defined criteria are needed for the humane salvage of ill or dying animals. The purpose of this paper is to describe, in detail, the preparation, procedures, and protocols we developed and tested for the field evaluation of wild desert tortoises ( Gopherus agassizii ). These guidelines describe: preparations for the field, including developing familiarity with tortoise behavior and ecology, and preparation of standardized data sheets; journal notes to document background data on weather conditions, temperature, rainfall, locality, and historic and recent human activities; procedures to prevent the spread of disease and parasites; data sheets for live tortoises to record tortoise identification, location, sex, body measurements and activity; health profile forms for documenting and grading physical abnormalities of tortoise posture and movements, general condition (e.g., lethargy, cachexia), external parasites, and clinical abnormalities associated with shell and upper respiratory diseases; permanent photographic records for the retrospective analysis of progression and regression of upper respiratory and eye diseases, analysis of shell lesions and evaluation of growth and age; and indications and methods for salvaging ill or dying tortoises for necropsy evaluation. These guidelines, tested on 5,000 to 20,000 tortoises over a 10 to 27 yr period, were designed to maximize acquisition of data for demographic, ecological, health and disease research projects; to reduce handling and stress of individual animals; to avoid spread of infectious disease; to promote high quality and consistent data sets; and to reduce the duration and number of field trips. The field methods are adapted for desert tortoise life cycle, behavior, anatomy, physiology, and pertinent disease; however the model is applicable to other species of reptiles. Comprehensive databases of clinical signs of disease and health are crucial to research endeavors and essential to decisions on captive release, epidemiology of disease, translocation of wild tortoises, breeding programs, and euthanasia.

Journal of Wildlife Diseases↗

USGS1977

Surficial and applied surficial geology of the Belchertown Quadrangle, Massachusetts

Till and stratified drift overlie maturely dissected topography in the Belchertown quadrangle, an area that straddles the New England Upland and Connecticut Valley Lowland in central Massachusetts. Lower Paleozoic, massive quartzo-feldspathic gneiss, quartzite and schist of the Pelham dome and Devonian granodiorite and quartz diorite of the Belchertown intrusive complex are in contact with Triassic arkosic fanglomerate and basalt along a lengthy normal fault separating the New England Upland from the Connecticut Valley Lowland. The orientation of striae, roches moutonnees, and streamline ridges indicate that the last Wisconsinian glacier advanced generally south 12? east. This glacier removed several meters of rock from the upland and an unknown larger quantity from the preglacial valley of the Connecticut River. Till is thin in the uplands, but several tens of feet of drift overlie bedrock in the lowland. Three lithic facies of sandy, clast-rich, non-compact, subarkosic till derived from the three major source rocks rest on bedrock or on highly weathered, compact, clast-poor, fissile probably older till. The mean for all upper till is 69.6% sand, 21.7% silt, and 8.8% clay; lower till consists of 48% sand, 23% silt and 29% clay. Mud-rich, compact, sparsely stony till in drumlins in and along the flank of the Connecticut Valley Lowland is composed of 51.5% sand, 28% silt, and 20.5% clay. Upper tills are facies equivalent deposits of the youngest Wisconsinian drift. Lower till is compact deeply weathered, jointed and stained suggesting it is correlative with other lower till in New England deposited by an earlier Wisconsinian glacier. Drumlin till may be a facies equivalent of a lower till or a mud-rich upper till derived from earlier glaciolacustrine deposits. Upper and lower till of the Belchertown quadrangle is texturally similar to other New England upper and lower tills to which they are equivalent. Both tills are interpreted as lodgment till derived from similar bedrock terrane by two different glaciers. The older glacier incorporated mud-rich saprolite producing a fine grained till, while the younger glacier eroded fresh bedrock or a thin regolith produced by mechanical weathering. During stagnation zone retreat of the last glacier, stratified drift was deposited by melt water in, on, alongside or down valley from stagnant ice. The absence of stratified drift along upland divides indicates that stagnation did not begin till large nunataks were emergent. Kame terraces, kame deltas, and ice channel fillings indicate that melt water flowed along stagnant ice and emptied into temporary proglacial lakes. As downwasting progressed, water was able to drain at lower elevation into expanding lakes, the last of which merged with northward-expanding proglacial Lake Hitchcock in the Connecticut Valley. Initial melt water drainage to the southeast was followed by drainage to the southwest to the ancestral Chicopee River. With the opening of the Narrows, Lake Hitchcock expanded northward and eastward to form the Amherst embayment into which melt water from the eastern uplands drained. Sand and gravel overlying varves in the Amherst embayment was deposited in late-glacial Lake Lawrence, which coalesced with equivalent Lake Hadley through cols between drumlins in the Connecticut Valley Lowland. Deglaciation of the Belchertown quadrangle probably occurred in a span of about 100 years in the interval 12,000 to 12,500 years B.P. Unconsolidated sediments of the Belchertown quadrangle are summarized as to their geologic and geotechnical properties for land use planning. Drift as it influences groundwater flow, yield, and quality and as a construction material is assessed. Some environmental degradation has occurred from the indiscriminant disposal of liquid and solid waste as well as injudicious use of road salt.

Open-File Report↗

USGS2017

Human infectious disease burdens decrease with urbanization but not with biodiversity

nfectious disease burdens vary from country to country and year to year due to ecological and economic drivers. Recently, Murray et al. (Murray CJ et al . 2012 Lancet 380 , 2197–2223. ( doi:10.1016/S0140-6736(12)61689-4 )) estimated country-level morbidity and mortality associated with a variety of factors, including infectious diseases, for the years 1990 and 2010. Unlike other databases that report disease prevalence or count outbreaks per country, Murray et al. report health impacts in per-person disability-adjusted life years (DALYs), allowing comparison across diseases with lethal and sublethal health effects. We investigated the spatial and temporal relationships between DALYs lost to infectious disease and potential demographic, economic, environmental and biotic drivers, for the 60 intermediate-sized countries where data were available and comparable. Most drivers had unique associations with each disease. For example, temperature was positively associated with some diseases and negatively associated with others, perhaps due to differences in disease agent thermal optima, transmission modes and host species identities. Biodiverse countries tended to have high disease burdens, consistent with the expectation that high diversity of potential hosts should support high disease transmission. Contrary to the dilution effect hypothesis, increases in biodiversity over time were not correlated with improvements in human health, and increases in forestation over time were actually associated with increased disease burden. Urbanization and wealth were associated with lower burdens for many diseases, a pattern that could arise from increased access to sanitation and healthcare in cities and increased investment in healthcare. The importance of urbanization and wealth helps to explain why most infectious diseases have become less burdensome over the past three decades, and points to possible levers for further progress in improving global public health.

Philosophical Transactions of the Royal Society B:↗

USGS2006

Modeling habitat distribution from organism occurrences and environmental data: Case study using anemonefishes and their sea anemone hosts

We demonstrate the KGSMapper (Kansas Geological Survey Mapper), a straightforward, web-based biogeographic tool that uses environmental conditions of places where members of a taxon are known to occur to find other places containing suitable habitat for them. Using occurrence data for anemonefishes or their host sea anemones, and data for environmental parameters, we generated maps of suitable habitat for the organisms. The fact that the fishes are obligate symbionts of the anemones allowed us to validate the KGSMapper output: we were able to compare the inferred occurrence of the organism to that of the actual occurrence of its symbiont. Characterizing suitable habitat for these organisms in the Indo-West Pacific, the region where they naturally occur, can be used to guide conservation efforts, field work, etc.; defining suitable habitat for them in the Atlantic and eastern Pacific is relevant to identifying areas vulnerable to biological invasions. We advocate distinguishing between these 2 sorts of model output, terming the former maps of realized habitat and the latter maps of potential habitat. Creation of a niche model requires adding biotic data to the environmental data used for habitat maps: we included data on fish occurrences to infer anemone distribution and vice versa. Altering the selection of environmental variables allowed us to investigate which variables may exert the most influence on organism distribution. Adding variables does not necessarily improve precision of the model output. KGSMapper output distinguishes areas that fall within 1 standard deviation (SD) of the mean environmental variable values for places where members of the taxon occur, within 2 SD, and within the entire range of values; eliminating outliers or data known to be imprecise or inaccurate improved output precision mainly in the 2 SD range and beyond. Thus, KGSMapper is robust in the face of questionable data, offering the user a way to recognize and clean such data. It also functions well with sparse datasets. These features make it useful for biogeographic meta-analyses with the diverse, distributed datasets that are typical for marine organisms lacking direct commercial value. ?? Inter-Research 2006.

Marine Ecology Progress Series↗

USGS2018

Science support for evaluating natural recovery of polychlorinated biphenyl concentrations in fish from Crab Orchard Lake, Crab Orchard National Wildlife Refuge, Illinois

Introduction Crab Orchard Lake in southern Illinois is one of the largest and most popular recreational lakes in the state. Construction of the nearly 7,000-acre reservoir in the late 1930s created employment opportunities through the Works Progress Administration, and the lake itself was intended to supply water, control flooding, and provide recreational opportunities for local communities (Stall, 1954). In 1942, the Department of War appropriated or purchased more than 20,000 acres of land around Crab Orchard Lake and constructed the Illinois Ordnance Plant, which manufactured bombs and anti-tank mines during World War II. After the war, an Act of Congress transferred the property to the U.S. Department of the Interior. Crab Orchard National Wildlife Refuge was established on August 5, 1947, for the joint purposes of wildlife conservation, agriculture, recreation, and industry. Production of explosives continued, but new industries also moved onsite. More than 200 tenants have held leases with Crab Orchard National Wildlife Refuge and have operated a variety of manufacturing plants (electrical components, plated metal parts, ink, machined parts, painted products, and boats) on-site. Soils, water, and sediments in several areas of the refuge were contaminated with hazardous substances from handling and disposal methods that are no longer acceptable environmental practice (for example, direct discharge to surface water, use of unlined landfills). Polychlorinated biphenyl (PCB) contamination at the refuge was identified in the 1970s, and a PCB-based fish-consumption advisory has been in effect since 1988 for Crab Orchard Lake. The present advisory covers common carp ( Cyprinus carpio ) and channel catfish ( Ictalurus punctatus ); see Illinois Department of Public Health (2017). Some of the most contaminated areas of the refuge were actively remediated, and natural ecosystem recovery processes are expected to further reduce residual PCB concentrations in the lake. The U.S. Fish and Wildlife Service sought technical support to understand environmental drivers of current (2017) PCB residues in fish tissue and patterns in PCB residues through time to inform the fish-consumption advisory for Crab Orchard Lake. This project is planned in two phases (Tasks 1 and 2); the first phase is included in this report. Task 1, reported here, includes a review of existing literature and a brief overview focused on environmental and biochemical/physiological processes that drive PCB residues in fish tissue. This review specifically targets processes that are relevant for freshwater lacustrine environments such as those at Crab Orchard Lake. In addition to discussions of environmental fate, metabolism, and accumulation of PCBs, this review includes a brief scientifically based explanation of approaches used to establish fish-consumption advisories. A planned second task (Task 2) will include a compilation and summary of existing data on PCB residues in fish tissue samples from Crab Orchard Lake. This summary will also place Crab Orchard Lake data in a broader geographic context through a comparison with fish data from other Midwestern lakes. When Task 1 and Task 2 are complete, resource managers will have (a) a synthesis of existing literature that characterizes the processes influencing the fate of residual PCBs remaining in systems such as Crab Orchard Lake, (b) a summary of natural PCB attenuation processes for use in risk communication with the public, and (c) a summary of existing data on PCBs in fish tissues from Crab Orchard Lake, including exploratory plots of tissue residues through time. Overall, this project will provide data to help resource managers better understand the ecological and public health consequences of residual PCBs in Crab Orchard Lake.

Illinois↗

USGS2000

Toxicity of manganese to Ceriodaphnia dubia and Hyalella azteca

Manganese is a toxic element frequently overlooked when assessing toxicity of effluents, sediments, and pore waters. Manganese can be present at toxic levels in anoxic solutions due to increased solubility under chemically reducing conditions, and it can remain at those levels for days in aerated test waters due to slow precipitation kinetics. Ceriodaphnia dubia and Hyalella azteca are freshwater organisms often used for toxicity testing and recommended for assessments of effluents and pore waters. Lethal and reproductive-inhibition concentrations of Mn were determined for C. dubia in acute 48-h tests and chronic three-brood tests using animals <24 h old and between 24 and 48 h old. Sensitivity of H. azteca to Mn was determined with 7-day-old animals in acute 96-h tests. Tests were run at three levels of water hardness to assess the amelioratory effect, which was often significant. Manganese concentrations were measured analytically at test initiation and after 96 h for calculation of toxicity and determination of Mn precipitation during the tests. Minimal amounts of Mn (≤3%) precipitated within 96 h. LC 50 s determined for H. azteca progressively increased from 3.0 to 8.6 to 13.7 mg Mn/L in soft, moderately hard, and hard waters, respectively. The tolerance of C. dubia to Mn was not significantly different between moderately hard and hard waters, but was significantly lower in soft water. Manganese sensitivity of C. dubia was not significantly different between the ages tested. Acute LC 50 values for C. dubia averaged 6.2, 14.5 and 15.2 mg Mn/L and chronic IC 50 values averaged 3.9, 8.5 and 11.5 mg Mn/L for soft, moderately-hard and hard waters, respectively. Manganese toxicity should be considered when assessing solutions with concentrations approaching these levels.

Archives of Environmental Contamination and Toxico↗

USGS2018

A surrogate regression approach for computing continuous loads for the tributary nutrient and sediment monitoring program on the Great Lakes

Water quality (WQ) in many Great Lake tributaries has been degraded (increased nutrient and sediment concentrations) due to changes in their watersheds, resulting in downstream eutrophication. As part of the Great Lakes Water Quality Agreement, specific goals were established for loading of specific constituents (e.g., phosphorus). In 2010, the Great Lakes Restoration Initiative was launched to identify problem areas, accelerate restoration efforts, and track their progress. In 2011, the U.S. Geological Survey established a monitoring program on 30 tributaries to the lakes, representing ~ 46% of the U.S. draining area and the spectrum of land uses. Discrete measurements of nutrients and suspended sediment, and continuous measurements of flow and WQ surrogates (turbidity, temperature, specific conductance, pH, and dissolved oxygen) are being collected in these tributaries to document their WQ and estimate continuous (5-min) loading. To estimate loadings, two regression models were developed for each constituent for each site: one using continuous flow and a seasonality factor; and one using flow, seasonality, and continuous surrogates. Variables included in the final models for each constituent were chosen from the explanatory variables that worked “best” for all sites. In computing loads, when continuous surrogate data were unavailable for short periods, loads were computed using the flow and seasonality models. Prediction intervals for all loads were calculated using results from both models. These results provide a better understanding of short-term variability and long-term changes in loading affecting the environmental health of the Great Lakes than traditional regression techniques that employ only flow and seasonality parameters.

Great Lake↗

USGS2004

Comparison of fluorescence microscopy and solid-phase cytometry methods for counting bacteria in water

Total direct counts of bacterial abundance are central in assessing the biomass and bacteriological quality of water in ecological and industrial applications. Several factors have been identified that contribute to the variability in bacterial abundance counts when using fluorescent microscopy, the most significant of which is retaining an adequate number of cells per filter to ensure an acceptable level of statistical confidence in the resulting data. Previous studies that have assessed the components of total-direct-count methods that contribute to this variance have attempted to maintain a bacterial cell abundance value per filter of approximately 10 6 cells filter -1 . In this study we have established the lower limit for the number of bacterial cells per filter at which the statistical reliability of the abundance estimate is no longer acceptable. Our results indicate that when the numbers of bacterial cells per filter were progressively reduced below 10 5 , the microscopic methods increasingly overestimated the true bacterial abundance (range, 15.0 to 99.3%). The solid-phase cytometer only slightly overestimated the true bacterial abundances and was more consistent over the same range of bacterial abundances per filter (range, 8.9 to 12.5%). The solid-phase cytometer method for conducting total direct counts of bacteria was less biased and performed significantly better than any of the microscope methods. It was also found that microscopic count data from counting 5 fields on three separate filters were statistically equivalent to data from counting 20 fields on a single filter.

Applied and Environmental Microbiology↗

USGS1996

Potential role of vegetation feedback in the climate sensitivity of high-latitude regions: A case study at 6000 years B.P.

Previous climate model simulations have shown that the configuration of the Earth's orbit during the early to mid-Holocene (approximately 10–5 kyr) can account for the generally warmer-than-present conditions experienced by the high latitudes of the northern hemisphere. New simulations for 6 kyr with two atmospheric/mixed-layer ocean models (Community Climate Model, version 1, CCMl, and Global ENvironmental and Ecological Simulation of Interactive Systems, version 2, GENESIS 2) are presented here and compared with results from two previous simulations with GENESIS 1 that were obtained with and without the albedo feedback due to climate-induced poleward expansion of the boreal forest. The climate model results are summarized in the form of potential vegetation maps obtained with the global BIOME model, which facilitates visual comparisons both among models and with pollen and plant macrofossil data recording shifts of the forest-tundra boundary. A preliminary synthesis shows that the forest limit was shifted 100–200 km north in most sectors. Both CCMl and GENESIS 2 produced a shift of this magnitude. GENESIS 1 however produced too small a shift, except when the boreal forest albedo feedback was included. The feedback in this case was estimated to have amplified forest expansion by approximately 50%. The forest limit changes also show meridional patterns (greatest expansion in central Siberia and little or none in Alaska and Labrador) which have yet to be reproduced by models. Further progress in understanding of the processes involved in the response of climate and vegetation to orbital forcing will require both the deployment of coupled atmosphere-biosphere-ocean models and the development of more comprehensive observational data sets.

Global Biogeochemical Cycles↗

USGS2012

Synchronous cycling of Ichthyophoniasis with Chinook salmon density revealed during the annual Yukon River spawning migration

Populations of Chinook salmon Oncorhynchus tshawytscha in the Yukon River declined by more than 57% between 2003 and 2010, probably the result of a combination of anthropogenic and environmental factors. One possible contributor to this decline is Ichthyophonus , a mesomycetozoan parasite that has previously been implicated in significant losses of fish, including Chinook salmon. A multiyear epidemiological study of ichthyophoniasis in the Yukon River revealed that disease prevalence and Chinook salmon population abundance increased and decreased simultaneously (i.e., were concordant) from 1999 to 2010. The two values rose and fell synchronously 91% of the time for female Chinook salmon and 82% of the time for males; however, there was no significant correlation between Ichthyophonus prevalence and population abundance. This synchronicity might be explained by a single factor, such as a prey item that is critical to Chinook salmon survival as well as a source of Ichthyophonus infection. The host–parasite relationship between Ichthyophonus and migrating Chinook salmon from 2004 to 2010 was similar to that reported for the previous 5 years. During 2004–2010, overall disease prevalence was significantly higher among females (21%) than among males (8%), increased linearly with fish length for both males and females, and increased in both sexes as the fish progressed upriver. These regularly occurring features of host–parasite dynamics confirm a stable base of transmission for Ichthyophonus . However, from 2003 to 2010, disease prevalence decreased from 30% to just 8% in males and from 45% to 9% in females, paralleling a similar decline in Chinook salmon abundance during the same period. These findings may help clarify questions regarding the complex host–parasite dynamics that occur in marine species such as herrings Clupea spp., which have less well-defined population structures.

Alaska↗

USGS2014

To understand coral disease, look at coral cells

Diseases threaten corals globally, but 40 years on their causes remain mostly unknown. We hypothesize that inconsistent application of a complete diagnostic approach to coral disease has contributed to this slow progress. We quantified methods used to investigate coral disease in 492 papers published between 1965 and 2013. Field surveys were used in 65% of the papers, followed by biodetection (43%), laboratory trials (20%), microscopic pathology (21%), and field trials (9%). Of the microscopic pathology efforts, 57% involved standard histopathology at the light microscopic level (12% of the total investigations), with the remainder dedicated to electron or fluorescence microscopy. Most (74%) biodetection efforts focused on culture or molecular characterization of bacteria or fungi from corals. Molecular and immunological tools have been used to incriminate infectious agents (mainly bacteria) as the cause of coral diseases without relating the agent to specific changes in cell and tissue pathology. Of 19 papers that declared an infectious agent as a cause of disease in corals, only one (5%) used microscopic pathology, and none fulfilled all of the criteria required to satisfy Koch’s postulates as applied to animal diseases currently. Vertebrate diseases of skin and mucosal surfaces present challenges similar to corals when trying to identify a pathogen from a vast array of environmental microbes, and diagnostic approaches regularly used in these cases might provide a model for investigating coral diseases. We hope this review will encourage specialists of disease in domestic animals, wildlife, fish, shellfish, and humans to contribute to the emerging field of coral disease.

EcoHealth↗

USGS2017

Multinomial N-mixture models improve the applicability of electrofishing for developing population estimates of stream-dwelling Smallmouth Bass

Failure to account for variable detection across survey conditions constrains progressive stream ecology and can lead to erroneous stream fish management and conservation decisions. In addition to variable detection’s confounding long-term stream fish population trends, reliable abundance estimates across a wide range of survey conditions are fundamental to establishing species–environment relationships. Despite major advancements in accounting for variable detection when surveying animal populations, these approaches remain largely ignored by stream fish scientists, and CPUE remains the most common metric used by researchers and managers. One notable advancement for addressing the challenges of variable detection is the multinomial N -mixture model. Multinomial N -mixture models use a flexible hierarchical framework to model the detection process across sites as a function of covariates; they also accommodate common fisheries survey methods, such as removal and capture–recapture. Effective monitoring of stream-dwelling Smallmouth Bass Micropterus dolomieu populations has long been challenging; therefore, our objective was to examine the use of multinomial N -mixture models to improve the applicability of electrofishing for estimating absolute abundance. We sampled Smallmouth Bass populations by using tow-barge electrofishing across a range of environmental conditions in streams of the Ozark Highlands ecoregion. Using an information-theoretic approach, we identified effort, water clarity, wetted channel width, and water depth as covariates that were related to variable Smallmouth Bass electrofishing detection. Smallmouth Bass abundance estimates derived from our top model consistently agreed with baseline estimates obtained via snorkel surveys. Additionally, confidence intervals from the multinomial N -mixture models were consistently more precise than those of unbiased Petersen capture–recapture estimates due to the dependency among data sets in the hierarchical framework. We demonstrate the application of this contemporary population estimation method to address a longstanding stream fish management issue. We also detail the advantages and trade-offs of hierarchical population estimation methods relative to CPUE and estimation methods that model each site separately.

Missouri, Oklahoma↗

USGS2008

Sea-floor character and sedimentary processes in the vicinity of Woods Hole, Massachusetts

Continuous-coverage multibeam bathymetric models and sidescan-sonar imagery have been verified with high-resolution seismic-reflection profiles, sediment sampling, and bottom photography. Together these data layers provide detailed base maps that yield topographic, compositional, and environmental perspectives of the sea floor in the vicinity of Woods Hole, an important harbor and major passage between the Elizabeth Islands and Cape Cod, Massachusetts. Tidally dominated high-energy environments within Woods Hole have prevented deposition of Holocene marine sediments, exposed underlying glacial drift of the Buzzards Bay moraine, and winnowed finer grained sediments, leaving lag deposits of boulders and gravel. These conditions have also enlarged and preserved depressions in the moraine surface that were originally kettle holes and formed ebb-tidal deltas at the entrances to passages. Fields of transverse and barchanoid sand waves dominate across the southern part of the study area in Vineyard Sound, where benthic environments are characterized by processes associated with coarse-bedload transport. Transverse sand waves dominate near shoals where sediment supply is greater and have asymmetries that indicate that the shoals are shaped and maintained by clockwise gyres of net sediment transport. Barchanoid sand waves, which are most common where Holocene sediments are thinner, commonly align into elongate fields that have smaller isolated waves concentrated at the eastern ends and that progressively widen and have waveforms that increase in amplitude, wavelength, and complexity westward. The northern, protected parts of the Little and Inner Harbors are characterized by muddy sediment and processes associated with deposition. A pockmark field in Little Harbor and the muddy, organic-rich sediments that form a scarp along the edge of Parker Flat are evidence for the presence of submerged marsh deposits formed during the Holocene rise in sea level.

Massachusetts↗

USGS2021

Enhancing the application of Earth observations for improved environmental decision-making using the Early Warning eXplorer (EWX)

The mitigation of losses due to extreme climate events and long-term climate adaptation requires climate informed decision-making. In the past few decades, several remote sensing and modeled-based Earth observations (EOs) have been developed to provide an unprecedented global overview and routine monitoring of climate and its impacts on vegetation and hydrologic conditions, with the goal of supporting informed decision-making. However, their usage in decision-making is particularly limited in climate-risk vulnerable and in situ data-scarce regions such as sub-Saharan Africa, due to lack of access to EOs. Here, we describe the Early Warning eXplorer (EWX), which was developed to address this crucial limitation and facilitate the application of EOs in decision-making, particularly in the food and water-insecure regions of the world. First, the EWX's core framework, which includes (i) the Viewer, (ii) GeoEngine, and (iii) Support Applications, is described. Then, a comprehensive overview of the Viewer, which is a web-based interface used to access EOs, is provided. This includes a description of (i) the maps and associated features to access gridded EO data and anomalies for different temporal averaging periods, (ii) time series graphs and associated features to access EOs aggregated over polygons such as administrative boundaries, and (iii) commonly used EOs served by the EWX that provide assessments of climate and vegetation conditions. Next, examples are provided to demonstrate how EWX can be used to monitor development, progression, spatial extent, and severity of climate-driven extreme events to support timely decisions related to mitigation of food insecurity and flooding impacts. Finally, the value of a regional implementation of EWX at the Regional Centre for Mapping of Resources for Development (RCMRD) in Nairobi, Kenya, is highlighted. Regional implementation of the EWX facilitates access to regionally focused EOs and their availability at polygon boundaries most relevant to the local decision-makers. Similar instances of EWX implemented in other regions, especially those susceptible to food and water security, will likely further enhance the application of EOs for informed decision-making.

Frontiers in Climate↗