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Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

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At least 307 records · Page 17Linked to original sources
USGS1997

Global change and submerged aquatic vegetation research

Communities of submerged aquatic vegetation (SAY) are important components of many freshwater, brackish, and marine aquatic ecosystems. They prevent erosion by baffling the impacts of waves, especially from storms. These aquatic plant communities remove nutrients and other pollutants from river and runoff inputs to coastal areas, preventing their entry into surrounding waters. They provide nursery habitat for fish, shrimp, and other species, as well as forage for wintering waterfowl and endangered species such as sea turtles and manatees. Unfortunately, not only have the distribution and abundance of seagrasses in the northern Gulf of Mexico declined precipitously during the past 50 years, most notably from widespread deterioration of water quality, but submerged aquatic plant communities are also susceptible to long-term environmental changes that are predicted to accompany global climate change.

Fact Sheet↗
USGS1989

The impact of eastern equine encephalitis virus on efforts to recover the endangered whooping crane

The whooping crane (Grus americana), although never abundant in North America, became endangered primarily because of habitat modification and destruction. To help recovery, a captive propagation and reintroduction program was initiated at the Patuxent Wildlife Research Center (PWRC) in 1966. However, in 1984, 7 of 39 whooping cranes at PWRC died from infection by eastern equine encephalitis (EEE) virus, an arbovirus that infects a wide variety of indigenous bird species, although mortality is generally restricted to introduced birds. Following identification of the aetiological agent, surveillance and control measures were implemented, including serological monitoring of both wild and captive birds for EEE viral antibody and assay of locally-trapped mosquitoes for virus. In addition, an inactivated EEE virus vaccine developed for use in humans was evaluated in captive whooping cranes. Results so far suggest that the vaccine will afford protection to susceptible birds.

Book chapter↗
USGS2007

Factors affecting the reproduction, recruitment, habitat, and population dynamics of pallid sturgeon and shovelnose sturgeon in the Missouri River

For more than a hundred years, human activities have modified the natural forces that control the Missouri River and its native fish fauna. While the ecological effects of regulation and channel engineering are understood in general, the current understanding is not sufficient to guide river restoration and management. The U.S. Geological Survey (USGS) is in the third year of a multiagency research effort to determine the ecological requirements for reproduction and survival of the endangered pallid sturgeon (Scaphirhynchus albus) and shovelnose sturgeon (Scaphirhynchus platorhynchus) in the Missouri River. The multidisciplinary research strategy includes components of behavior, physiology, habitat use, habitat availability, and population modeling of all life stages. Shovelnose sturgeon are used to design the strategy because they are closely related to the pallid sturgeon and are often used as a surrogate species to develop new research tools or to examine the effects of management actions or environmental variables on sturgeon biology and habitat use. During fiscal years 2005 and 2006, the U.S. Army Corps of Engineers (USACE) provided funds to USGS for tasks associated with the Comprehensive Sturgeon Research Program (CSRP) and for tasks associated with evaluation of the Sturgeon Response to Flow Modifications (SRFM). Because work activities of CSRP and SRFM are so integrated, we are providing information on activities that have been consolidated at the task level. These task activities represent chapters in this report.

Open-File Report↗
USGS2007

Project overview: Chapter A in Factors affecting the reproduction, recruitment, habitat, and population dynamics of pallid sturgeon and shovelnose sturgeon in the Missouri River

For more than a hundred years, human activities have modified the natural forces that control the Missouri River and its native fish fauna. While the ecological effects of regulation and channel engineering are understood in general, the current understanding is not sufficient to guide river restoration and management. The U.S. Geological Survey (USGS) is in the third year of a multiagency research effort to determine the ecological requirements for reproduction and survival of the endangered pallid sturgeon ( Scaphirhynchus albus ) and shovelnose sturgeon ( Scaphirhynchus platorhynchus ) in the Missouri River. The multidisciplinary research strategy includes components of behavior, physiology, habitat use, habitat availability, and population modeling of all life stages. Shovelnose sturgeon are used to design the strategy because they are closely related to the pallid sturgeon and are often used as a surrogate species to develop new research tools or to examine the effects of management actions or environmental variables on sturgeon biology and habitat use. During fiscal years 2005 and 2006, the U.S. Army Corps of Engineers (USACE) provided funds to USGS for tasks associated with the Comprehensive Sturgeon Research Program (CSRP) and for tasks associated with evaluation of the Sturgeon Response to Flow Modifications (SRFM). Because work activities of CSRP and SRFM are so integrated, we are providing information on activities that have been consolidated at the task level. These task activities represent chapters in this report.

Missouri River↗
USGS2013

Fish assemblages in borrow-pit lakes of the Lower Mississippi River

Borrow-pit lakes encompass about a third of the lentic water habitats (by area) in the active floodplain of the Lower Mississippi River, yet little is known about their fish assemblages. We investigated whether fish assemblages supported by borrow-pit lakes resembled those in oxbow lakes to help place the ecological relevance of borrow-pit lakes in context with that of natural floodplain lakes. In all, we collected 75 fish species, including 65 species in eight borrow-pit lakes, 52 species in four riverside oxbow lakes, and 44 species in eight landside oxbow lakes. Significant differences in several species richness metrics were evident between borrow-pit lakes and landside oxbow lakes but not between borrow-pit lakes and riverside oxbow lakes. All three lake types differed in fish assemblage composition. Borrow-pit lakes and riverside oxbow lakes tended to include a greater representation of fish species that require access to diverse environments, including lentic, lotic, and palustrine habitats; fish assemblages in landside oxbow lakes included a higher representation of lacustrine species. None of the fish species collected in borrow-pit lakes was federally listed as threatened or endangered, but several were listed as species of special concern by state governments in the region, suggesting that borrow-pit lakes provide habitat for sensitive riverine and wetland fish species. Differences in fish assemblages among borrow-pit lakes were linked to engineered morphologic features, suggesting that diversity in engineering can contribute to diversity in fish assemblages; however, more research is needed to match engineering designs with fish assemblage structures that best meet conservation needs.

Lower Mississippi River↗
USGS2019

An overview of the world’s plovers

Plovers of the genus Charadrius and their close allies are a diverse group, numbering 40 species, many with subspecies. They breed on all continents except Antarctica, in open, sparsely vegetated habitats of tundra and grasslands, and along shores of oceans, rivers, and inland lakes. Most are migratory, especially those breeding in arctic and temperate regions; others are partial migrants or sedentary. On migration, they are poorly studied and do not always correspond to the typical shorebird (i.e., sandpiper) pattern characterized by dense flocks concentrating at a few staging areas. Their foraging ecologies are rather uniform in that all species search visually for prey using a “run-stop-peck” maneuver. Breeding birds defend nesting and foraging territories while nonbreeding birds forage in loose flocks, which may stem from individuals minimizing interference with conspecifics while enhancing benefits of shared vigilance for predators. In breeding, they are conservative, laying two to four eggs at daily or longer intervals; replacement clutches are common, especially in species with prolonged breeding seasons. Precocial young hatch after comparatively long incubation that is correlated with development of neural centers associated with vision. Their mating systems are a mix of social monogamy and biparental care, with frequent sequential polygamy, especially in temperate and tropical taxa that breed for extended periods. Population sizes vary over several orders of magnitude; several species are highly endangered. Other species are abundant and widely distributed, although their populations may also be in decline. Regardless of their status, most plovers occupy habitats throughout the year that put them at conservation risk owing to anthropogenic factors including climate change, human disturbance, habitat loss, and predation. In this book, we draw from the expertise of an international group of researchers to outline the ecologies, behaviors, and challenges of plovers throughout the annual cycle so that decision makers can be most successful in their endeavors to conserve and manage populations.

Book chapter↗
USGS2018

Findings and lessons learned from the assessment of the Mexico-United States transboundary San Pedro and Santa Cruz aquifers: The utility of social science in applied hydrologic research

Study Region This study region encompasses the Transboundary San Pedro and Santa Cruz aquifers which are shared between the states of Sonora (Mexico) and Arizona (US). Special regional considerations include a semi-arid climate, basin-fill aquifers with predominantly montane recharge areas, economic drivers in the mining, trade, and military sectors, groundwater-dependent cities with expanding cones of depression, interbasin groundwater transfers, ground- and surface-water contamination, and protected aquatic and riparian habitats that act as significant migration corridors for hundreds of species, including some that are threatened and endangered. Study Focus We focus on lessons learned from the hydrologic assessment of the Transboundary San Pedro and Santa Cruz aquifers. We conducted the work, in two phases: (1) laying the groundwork and (2) implementation. The “laying the groundwork” phase consisted of binational meetings with stakeholders and key actors (agencies and individuals), and the development of an understanding of the physical, institutional, historical, and socio-political context. This led to signing of the binational Transboundary Aquifer Assessment Program (TAAP) agreement in 2009 and detailed the process for cooperation and coordination in the assessment of shared aquifers. The implementation phase began with an agreement to proceed with the study of four “focus” aquifers (Santa Cruz, San Pedro, Mesilla (Conejos-Médanos in Mexico), and Hueco Bolson (Bolsón del Hueco in Mexico)) and development of associated technical teams. Though we do include a brief discussion of the lessons learned from the physical science portion of the study, the results have been described and published elsewhere. The bulk of the paper instead focuses on the findings and lessons learned from the integration of social-science perspectives into a largely physical-science based program, since there is a growing recognition of the need for this type of approach especially in the management and assessment of transboundary aquifers. New Hydrological Insights for the Region The Sonora-Arizona effort succeeded because both countries were adequately represented, and because of flexibility of skills and ability of teams comprising both university and government scientists. Teams included social and earth scientists. Including the social sciences was critical to research design and implementation, and to addressing the cultural, institutional, and socio-political contexts of transboundary aquifer assessment. Significant components of the continuing implementation phase include strategic planning, data compilation and analysis, cross-border integration of datasets, geophysical and geochemical surveys, and internal, peer, and stakeholder engagement.

Arizona, Sonora↗
USGS2017

Molecular phylogeny of the Nearctic and Mesoamerican freshwater mussel genus Megalonaias

Megalonaias is the most geographically widespread genus of the subfamily Ambleminae and is distributed across much of the eastern half of North America, from Minnesota to Nicaragua. Despite the large geographic distribution, the species-level diversity of Megalonaias is quite depauperate (2 spp.), suggesting the genus may not be constrained by the same physical, ecological, or physiological barriers that limit dispersal in many other amblemines. However, this hypothesis is contingent on the assumption that the current taxonomy of Megalonaias accurately reflects its evolutionary history, which remains incompletely understood due to the marginalization of Mesoamerican populations in systematic research. Using one mitochondrial (COI ) and one nuclear marker ( ITS1 ) sequenced from 41 individuals distributed across both the Nearctic and Mesoamerican ecoregions, we set out to better understand the species boundaries and genetic diversity within Megalonaias . The reconstructed molecular phylogeny and the observed genetic diversity suggests that Megalonaias is a monotypic genus and that Megalonaias nickliniana , currently considered a federally endangered species, is not a valid species. These results are discussed in the context of their systematic and conservation implications, as well as how the unusual life history strategy of Megalonaias may be influencing its molecular diversity.

Hydrobiologia↗
USGS2018

Toward salt marsh harvest mouse recovery: A review

The salt marsh harvest mouse (SMHM, Reithrodontomys raviventris ) is an endangered species, endemic to the San Francisco Estuary. Despite being protected for almost half a century and being included in a large number of recovery, restoration, and management plans, significant data gaps hinder conservation and management of the species, a challenge further complicated by developing threats such as climate change. In this review, we present the current state of knowledge; highlight research gaps on habitat requirements and distribution, taxonomic status and genetic structure, physiology, reproduction and demographics, population dynamics, and behavior and community interactions; and present an overview of threats to the species. Our review indicates that substantial data gaps exist; although some aspects of SMHM ecology, such as habitat use, have been addressed extensively, others, such as the effects of environmental contamination, are largely unaddressed. We suggest that conservation and restoration-planning processes consider experimental approaches within restoration designs to address these deficiencies. Continued investment in basic and applied SMHM ecology to collect baseline and long-term data will also be beneficial. Additionally, further coordination among managers and researchers can facilitate more effective responses to uncertainties and emerging threats, especially climate change, which threatens the SMHM and its habitat throughout its range.

San Francisco Estuary and Watershed Science↗
USGS2024

Using resiliency, redundancy, and representation in a Bayesian belief network to assess imperilment of riverine fishes

Conservation prioritization frameworks are used worldwide to identify species at greatest risk of extinction and to allocate limited resources across regions, species, and populations. Conservation prioritization can be impeded by ecological knowledge gaps and data deficiency, especially in freshwater species inhabiting highly complex aquatic ecosystems. Therefore, we developed a flexible approach that calculates a species' imperilment risk based on the conservation principles of resiliency, redundancy, and representation (i.e., the “three R's”). Our approach organizes data on species traits, distributions, population connectivity, and threats within a Bayesian belief network capable of predicting resiliency and redundancy within representative ecological settings. Empirical data and expert judgment inform the model to provide robust and repeatable risk assessments for rare and data-deficient species. The model calculates resiliency at hierarchical spatial scales from distributional trends and population strength. Redundancy is estimated from the connectivity and quantities of extant populations. Resiliency, redundancy, and species' inherent vulnerability based on species traits collectively estimate extirpation risk within each unique ecological setting. Extirpation risks across ecological settings characterize representation and are aggregated to estimate global imperilment risk. We demonstrate the model's utility with Piebald Madtom ( Noturus gladiator ), a species petitioned for listing under the U.S. Endangered Species Act. Our results revealed that resiliency, redundancy, and extirpation risks can vary spatially across the species' range while identifying populations where additional sampling could disproportionally reduce uncertainty in estimated global imperilment risk. Our approach could standardize and expedite conservation status assessments, identify opportunities for early management intervention of at-risk species and populations, and strategically reduce uncertainty by focusing monitoring and research on priority information gaps.

Ecosphere↗
USGS2011

Fort Collins Science Center fiscal year 2010 science accomplishments

The scientists and technical professionals at the U.S. Geological Survey (USGS), Fort Collins Science Center (FORT), apply their diverse ecological, socioeconomic, and technological expertise to investigate complicated ecological problems confronting managers of the Nation's biological resources. FORT works closely with U.S. Department of the Interior (DOI) agency scientists, the academic community, other USGS science centers, and many other partners to provide critical information needed to help answer complex natural-resource management questions. In Fiscal Year 2010 (FY10), FORT's scientific and technical professionals conducted ongoing, expanded, and new research vital to the science needs and management goals of DOI, other Federal and State agencies, and nongovernmental organizations in the areas of aquatic systems and fisheries, climate change, data and information integration and management, invasive species, science support, security and technology, status and trends of biological resources (including the socioeconomic aspects), terrestrial and freshwater ecosystems, and wildlife resources, including threatened and endangered species. This report presents selected FORT science accomplishments for FY10 by the specific USGS mission area or science program with which each task is most closely associated, though there is considerable overlap. The report also includes all FORT publications and other products published in FY10, as well as staff accomplishments, appointments, committee assignments, and invited presentations.

Open-File Report↗
USGS2005

The watershed and river systems management program

The Watershed and River System Management Program (WaRSMP), a joint effort between the U.S. Geological Survey (USGS) and the U.S. Bureau of Reclamation (Reclamation), is focused on research and development of decision support systems and their application to achieve an equitable balance among diverse water resource management demands. Considerations include: (1) legal and political constraints; (2) stake holder and consensus-building; (3) sound technical knowledge; (4) flood control, consumptive use, and hydropower; (5) water transfers; (6) irrigation return flows and water quality; (7) recreation; (8) habitat for endangered species; (9) water supply and proration; (10) near-surface groundwater; and (11) water ownership, accounting, and rights. To address the interdisciplinary and multi-stake holder needs of real-time watershed management, WaRSMP has developed a decision support system toolbox. The USGS Object User Interface facilitates the coupling of Reclamation's RiverWare reservoir operations model with the USGS Modular Modeling and Precipitation Runoff Modeling Systems through a central database. This integration is accomplished through the use of Model and Data Management Interfaces. WaRSMP applications include Colorado River Main stem and Gunnison Basin, the Yakima Basin, the Middle Rio Grande Basin, the Truckee-Carson Basin, and the Umatilla Basin.

Conference Paper↗
USGS2011

Forest bird monitoring protocol for strategic habitat conservation and endangered species management on O'ahu Forest National Wildlife Refuge, Island of O'ahu, Hawai'i

This report describes the results of a pilot forest bird survey and a consequent forest bird monitoring protocol that was developed for the O'ahu Forest National Wildlife Refuge, O'ahu Island, Hawai'i. The pilot survey was conducted to inform aspects of the monitoring protocol and to provide a baseline with which to compare future surveys on the Refuge. The protocol was developed in an adaptive management framework to track bird distribution and abundance and to meet the strategic habitat conservation requirements of the Refuge. Funding for this research was provided through a Science Support Partnership grant sponsored jointly by the U.S. Geological Survey (USGS) and the U.S. Fish and Wildlife Service (USFWS).

Hawai'i↗
USGS2015

Determinants of public support for threatened and endangered species management: A case study of Cape Lookout National Seashore

Gaining public support for management actions is important to the success of public land management agencies' efforts to protect threatened and endangered species. This is especially relevant at national parks, where managers balance two aspects of their conservation mission: to protect resources and to provide for public enjoyment. This study examined variables potentially associated with support for management actions at Cape Lookout National Seashore, a unit of the National Park Service. Two visitor surveys were conducted at the park at different seasons, and a resident survey was conducted for households in Carteret County, North Carolina, where the park is located. The goal of the project was to provide park managers with information that may help with the development of communication strategies concerning the park's conservation mission. These communication strategies may help to facilitate mutual understanding and garner public support for management actions. Several variables were examined as potential determinants that park managers ought to consider when developing communication strategies. Multinomial logistic regression was applied to examine the relationships between these variables and the likelihood of support for or opposition to management actions. The variables examined included perceived shared values of park resources, general environmental attitudes, level of familiarity with park resources and regulations, knowledge about threatened and endangered species, level of trust in the decision-making process, and perceived shared values with park management. In addition, demographic variables such as income level, respondent age, residency status, and visitor type were also used. The results show that perceived values of threatened and endangered species, trust in park managers and the decision-making process, and perceived share values with park managers were among the strongest indicators of support for management actions. Different user groups also exhibited different levels of support, with groups engaged in specialized recreation activities (fishers) being the most likely to oppose management actions. While our findings are not surprising, they corroborate past research that has shown an effective communications strategy should be customized to target different audiences. In addition, management should focus on developing long-term relationships that build trust in and foster credibility of decision-making processes.

North Carolina↗
USGS2005

Managing water in the West: developing new tools for a critical resource

Rapid population growth in the Western United States over the last century has placed increasing strains on our water supplies and aquatic ecosystems. Historically, water rights have been used to determine the allocation of water in the West, but rules and regulations related to endangered species now often drive how water is released from reservoirs in large rivers such as the lower Colorado and the Columbia. In numerous smaller watersheds, communities are trying to balance the water necessary for human use, irrigation, and the conservation of ecosystems. To assist managers in the face of increasing complexity and uncertainty in water management decision-making, the Western Fisheries Research Center (WFRC) is involved in developing a new generation of integrative tools. Below are some examples of the types of tools that already exist within the WFRC.

Fact Sheet↗
USGS2018

Managing forest habitat for conservation-reliant species in a changing climate: The case of the endangered Kirtland’s Warbler

Conservation and recovery of species of concern necessitates evaluating forest habitat conditions under changing climate conditions, especially in the early stages of the delisting process. Managers must weigh implications of near-term habitat management activities within the context of changing environmental conditions and a species’ biological traits that may influence their vulnerability to changing conditions. Here we applied established population-habitat relationships based on decades of monitoring and research-management collaborations for the Kirtland’s Warbler ( Setophaga kirtlandii ) to project potential impacts of changing environmental conditions to breeding habitat distribution, quantity, and quality in the near future. Kirtland’s warblers are habitat-specialists that nest exclusively within dense jack pine ( Pinus banksiana ) forests between ca. 5–20 years of age. Using Random Forests to predict changes in distribution and growth rate of jack pine under future scenarios, results indicate the projected distribution of jack pine will contract considerably (ca. 75%) throughout the Lake States region, U.S.A. in response to projected environmental conditions in 2099 under RCP 4.5 and 8.5 climate scenarios regardless of climate model. Reduced suitability for jack pine regeneration across the Lake States may constrain management options, especially for creating high stem-density plantations nesting habitat. However, conditions remain suitable for jack pine regeneration within their historical and current core breeding range in northern Lower Michigan and several satellite breeding areas. Projected changes in jack pine growth rates varied within the core breeding area, but altered growth rates did not greatly alter the duration that habitat remained suitable for nesting by the Kirtland’s Warblers. These findings contribute to Kirtland’s Warbler conservation by informing habitat spatial planning of plantation management to provide a constant supply of nesting habitat based on the spatial variability of potential loss or gain of lands environmentally suitable for regenerating jack pine in the long-term.

Michigan, Wisconsin↗
USGS2022

Black Abalone surveys at Naval Base Ventura County, San Nicolas Island, California—2021, annual report

The U.S. Geological Survey monitors a suite of intertidal black abalone sites at San Nicolas Island, California, in cooperation with the U.S. Navy, which owns the island. The nine rocky intertidal sites were established in 1980 to study the potential effect of translocated sea otters on the intertidal black abalone population at the island. The sites were monitored from 1981 to 1997, usually annually or biennially. Monitoring resumed in 2001 and has been completed annually since then. Since 2018, the work has been carried out by the U.S. Geological Survey Western Ecological Research Center. The study sites became particularly important, from a management perspective, after a virulent disease decimated black abalone populations throughout southern California beginning in the mid-1980s. The disease, withering syndrome, was first observed on San Nicolas Island in 1992 and during the next few years, it reduced the population there by more than 99 percent. The species was subsequently listed as endangered under the Endangered Species Act in 2009. The subject of this report is the 2021 survey of the sites and how the measured population status compares to the long-term data (collected over several decades) at San Nicolas Island. During the last two decades, the total monitored black abalone population at the island has grown approximately ten-fold after the disease related decline, from about 200 to more than 2,000 abalone. Since it was first consistently measured in 2005, the mean distance between adjacent black abalone has decreased substantially from approximately 50 centimeters to less than 15 centimeters, indicating that abalone are close enough together at several of the sites to reproduce successfully. The 2021 counts were the first since 2016 to indicate a possible decline in the monitored population at San Nicolas Island. Although still more than ten times the population counted in 2001, counts on the transects dropped by 13.6 percent from the survey count in 2020. The most significant decline was the loss of 341 abalone, from the previous count of 547, on a transect that since 2002 had the highest count of all 44 transects. Between 2020 and 2021, there were increases and decreases at the sites and the transects at each site. Although the 2021 count was lower than the 2020 count, it was the second highest since 1997. Based on the number of small abalone counted, recruitment rates were similar to most years since 2008 and higher than the rates observed before the population declines resulting from withering syndrome.

California↗
USGS2002

North American box turtles: A natural history

Once a familiar backyard visitor in many parts of the United States and Mexico, the box turtle is losing the battle against extinction. In North American Box Turtles, C. Kenneth Dodd, Jr., has written the first book-length natural history of the twelve species and subspecies of this endangered animal. This volume includes comprehensive information on the species’ evolution, behavior, courtship and reproduction, habitat use, diet, population structure, systematics, and disease. Special features include color photos of all species, subspecies, and their habitats; a simple identification guide to both living and fossil species; and a summary of information on fossil Terrapene and Native uses of box turtles. End-of-chapter sections highlight future research directions, including the need for long-term monitoring and observation of box turtles within their natural habitat and conservation applications. A glossary and a bibliography of literature on box turtles accompany the text.

Book↗