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At least 307 records · Page 17Linked to original sources
USGS2021

Context-dependent deep learning

Explicitly representing an agent’s context has been shown to have many benefits, which should also apply to machine learning. In this paper, we describe an approach to do this called context-dependent deep learning (CDDL), which is based on earlier work in context-mediated behavior (CMB) that uses contextual schemas (c-schemas) to represent clas-ses of situations along with knowledge useful in them. These are then recalled, and they guide reasoning in the corre-sponding contexts. CDDL stores knowledge about deep neural network structure and weights in c-schemas, which al-lows context-specific learning. Our work is being developed in the domain of seabird detection in aerial images of islands for use by biologists.

Modeling and Using Context↗
USGS2004

Nutritional ecology of ursids: A review of newer methods and management implications

The capability to understand the nutritional ecology of free-ranging bears has increased dramatically in the last 20 years. Advancements have occurred because (1) managers and biologists recognized the need to link habitat quality, productivity, and variability with bear movements, home ranges, and demographic parameters like reproductive output, survival, and population growth, and (2) several research teams are using new methods to build on the results of earlier field studies. Our ability to couple new field methods and empirical field research with controlled experiments using captive bears has been central to our increased understanding of bear nutrition. Newer methods include the use of stable isotopes to quantify assimilated diet and nutrient flows within ecosystems, bioelectrical impedance to measure body composition, and naturally occurring mercury to estimate fish intake. Controlled experiments using captive bears have been integral to developing methods, isolating specific variables by controlling the environment, and providing additional nutritional understanding necessary to interpret field observations. We review new methods and apply our increased understanding of bear nutritional ecology to 3 management issues: (1) the importance of salmon ( Oncorhynchus spp.) to brown bears ( Ursus arctos ) in the Pacific Northwest, (2) the consequences of the closure of the Yellowstone garbage dumps to grizzly bears, and (3) the relocation of problem bears.

Ursus↗
USGS2005

Markov Chain Monte Carlo estimation of species distributions: A case study of the swift fox in western Kansas

Accurate maps of species distributions are essential tools for wildlife research and conservation. Unfortunately, biologists often are forced to rely on maps derived from observed occurrences recorded opportunistically during observation periods of variable length. Spurious inferences are likely to result because such maps are profoundly affected by the duration and intensity of observation and by methods used to delineate distributions, especially when detection is uncertain. We conducted a systematic survey of swift fox ( Vulpes velox ) distribution in western Kansas, USA, and used Markov chain Monte Carlo (MCMC) image restoration to rectify these problems. During 1997–1999, we searched 355 townships (ca. 93 km 2 ) 1–3 times each for an average cost of $7,315 per year and achieved a detection rate (probability of detecting swift foxes, if present, during a single search) of θ̂ = 0.69 (95% Bayesian confidence interval [BCI] = [0.60, 0.77]). Our analysis produced an estimate of the underlying distribution, rather than a map of observed occurrences, that reflected the uncertainty associated with estimates of model parameters. To evaluate our results, we analyzed simulated data with similar properties. Results of our simulations suggest negligible bias and god good precision when probabilities of detection on ≥1 survey occasions (cumulative probabilities of detection) exceed 0.65. Although the use of MCMC image restoration has been limited by theoretical and computational complexities, alternatives do not possess the same advantages. Image models accommodate uncertain detection, do not require spatially independent data or a census of map units, and can be used to estimate species distributions directly from observations without relying on habitat covariates or parameters that must be estimated subjectively. These features facilitate economical surveys of large regions, the detection of temporal trends in distribution, and assessments of landscape-level relations between species and habitats. Requirements for the use of MCMC image restoration include study areas that can be partitioned into regular grids of mapping units, spatially contagious species distributions, reliable methods for identifying target species, and cumulative probabilities of detection ≥0.65.

Kansas↗
USGS2005

Population size and winter distribution of eastern American oystercatchers

Conservation of the eastern subspecies of the American oystercatcher ( Haematopus palliatus palliatus ) is a high priority in the U.S. Shorebird Conservation Plan, but previous population estimates were unreliable, information on distribution and habitat associations during winter was incomplete, and methods for long-term monitoring had not been developed prior to this survey. We completed the aerial survey proposed in the U.S. Shorebird Conservation Plan to determine population size, winter distribution, and habitat associations. We conducted coastal aerial surveys from New Jersey to Texas during November 2002 to February 2003. This area comprised the entire wintering range of the eastern American oystercatcher within the United States. Surveys covered all suitable habitat in the United States for the subspecies, partitioned into 3 survey strata: known roost sites, high-use habitat, and inter-coastal tidal habitat. We determined known roost sites from extensive consultation with biologists and local experts in each state. High-use habitat included sand islands, sand spits at inlets, shell rakes, and oyster reefs. Partner organizations conducted ground counts in most states. We used high resolution still photography to determine detection rates for estimates of the number of birds in particular flocks, and we used ground counts to determine detection rates of flocks. Using a combination of ground and aerial counts, we estimated the population of eastern American oystercatchers to be 10,971 /− 298. Aerial surveys can serve an important management function for shorebirds and possibly other coastal waterbirds by providing population status and trend information across a wide geographic scale.

Journal of Wildlife Management↗
USGS2006

Estimating numbers of greater prairie-chickens using mark-resight techniques

Current monitoring efforts for greater prairie-chicken (Tympanuchus cupido pinnatus) populations indicate that populations are declining across their range. Monitoring the population status of greater prairie-chickens is based on traditional lek surveys (TLS) that provide an index without considering detectability. Estimators, such as immigration-emigration joint maximum-likelihood estimator from a hypergeometric distribution (IEJHE), can account for detectability and provide reliable population estimates based on resightings. We evaluated the use of mark-resight methods using radiotelemetry to estimate population size and density of greater prairie-chickens on 2 sites at a tallgrass prairie in the Flint Hills of Kansas, USA. We used average distances traveled from lek of capture to estimate density. Population estimates and confidence intervals at the 2 sites were 54 (CI 50-59) on 52.9 km 2 and 87 (CI 82-94) on 73.6 km2. The TLS performed at the same sites resulted in population ranges of 7-34 and 36-63 and always produced a lower population index than the mark-resight population estimate with a larger range. Mark-resight simulations with varying male:female ratios of marks indicated that this ratio was important in designing a population study on prairie-chickens. Confidence intervals for estimates when no marks were placed on females at the 2 sites (CI 46-50, 76-84) did not overlap confidence intervals when 40% of marks were placed on females (CI 54-64, 91-109). Population estimates derived using this mark-resight technique were apparently more accurate than traditional methods and would be more effective in detecting changes in prairie-chicken populations. Our technique could improve prairie-chicken management by providing wildlife biologists and land managers with a tool to estimate the population size and trends of lekking bird species, such as greater prairie-chickens.

Journal of Wildlife Management↗
USGS2006

Effects of abdominally implanted radiotransmitters with percutaneous antennas on migration, reproduction, and survival of Canada geese

Abdominally implanted radiotransmitters with percutaneous antennas are increasingly used to monitor movements, survival, and reproduction of waterbirds. However, there has been relatively little assessment of the effects of such radios on avian demographic parameters or migration. We implanted either a 26- or 35-g abdominal transmitter with percutaneous antenna in 198 adult female lesser Canada geese ( Branta canadensis parvipes ) in Anchorage, Alaska during 2000 and 2001. We compared migration chronology, reproductive effort, and survival of radiomarked females to 118 control females marked with leg bands. Arrival dates following spring migration were similar among females in different treatments in 2001. However, in 2002, wind direction during late migration was less favorable, and arrival of females with 35-g radiotransmitters lagged 1–2 days behind that of control females. Nest initiation dates, clutch size, and mean egg volume were similar for 152 nests of females that lacked radios and 62 nests of radiomarked females. Estimated nesting propensity for females with operable radiotransmitters was 61% and 72% in 2001 and 2002, respectively. Apparent annual survival (ϕ = 0.82, 95% confidence interval: 0.76 to 0.87) was similar among treatments in the first year after geese were marked. In the second and third years after marking, model-averaged estimates for survival of females with large radiotransmitters were 10% lower than estimates for control females. However, the effect of large radios on long-term survival was equivocal because of uncertainty surrounding treatment estimates. We conclude that abdominally implanted radiotransmitters with percutaneous antennas had small effects on migration chronology but no apparent effects on fecundity. Abdominal transmitters can provide unbiased estimates of anserine survival in the first year after deployment. Because of the potentially greater effects of larger transmitters on migration and long-term survival, we recommend that biologists minimize the size of implanted transmitters and deploy radios with caution if long-term survival of marked birds is a concern.

Alaska↗
USGS2005

Incisor wear and age in Yellowstone bison

Biologists commonly use tooth eruption and wear patterns or cementum annuli techniques to estimate age of ungulates. However, in some situations the accuracy or sampling procedures of either approach are undesirable. We investigated the progression of several quantitative measures of wear with age, using permanent first incisors from Yellowstone bison ( Bison bison ), and tested for differences between sexes and herds. We further investigated the relationship of wear and age to explore an age-estimation method. Labial-lingual width (LLW) correlated best with assigned age ( r 2 =0.66, males; r 2 =0.76 females). Labial-lingual width differed between sexes, with females showing ∼0.2 mm more wear than males. Additionally, differences in rate of wear existed between bison of the northern and central Yellowstone herds (1.2 and 0.9 mm/year, respectively). We developed a regression formula to test the power of LLW as an estimator of Yellowstone bison age. Our method provided estimated ages within 1 year of the assigned age 73% and 82% of the time for female and male bison, respectively.

Idaho, Montana, Wyoming↗
USGS2006

Are subcutaneous transmitters better than intracoelomic? The relevance of reporting methodology to interpreting results

Biologists rely on published scientific papers to increase their knowledge and to guide their future work. Papers comparing techniques can be especially influential when several options exist for accomplishing a task. In this paper, I use a recent publication comparing the effects on birds of several methods for attaching or implanting radio transmitters to illustrate the need for clear and accurate reporting of the techniques used. Because of deficiencies in methodology , in stating methodology , and in following cited methodology I argue that the conclusions drawn by the authors are not supportable.

Wildlife Society Bulletin↗
USGS2010

Mallard harvest distributions in the Mississippi and Central Flyways

The mallard (Anas platyrhynchos) is the most harvested duck in North America. A topic of debate among hunters, especially those in Arkansas, USA, is whether wintering distributions of mallards have changed in recent years. We examined distributions of mallards in the Mississippi (MF) and Central Flyways during hunting seasons 1980-2003 to determine if and why harvest distributions changed. We used Geographic Information Systems to analyze spatial distributions of band recoveries and harvest estimated using data from the United States Fish and Wildlife Service Parts Collection Survey. Mean latitudes of band recoveries and harvest estimates showed no significant trends across the study period. Despite slight increases in band recoveries and harvest on the peripheries of kernel density estimates, most harvest occurred in eastern Arkansas and northwestern Mississippi, USA, in all years. We found no evidence for changes in the harvest distributions of mallards. We believe that the late 1990s were years of exceptionally high harvest in the lower MF and that slight shifts northward since 2000 reflect a return to harvest distributions similar to those of the early 1980s. Our results provide biologists with possible explanations to hunter concerns of fewer mallards available for harvest.

Journal of Wildlife Management↗
USGS2010

Distribution and habitat use of king rails in the Illinois and Upper Mississippi River valleys

The migratory population of the king rail ( Rallus elegans ) has declined dramatically during the past 40 years, emphasizing the need to identify habitat requirements of this species to help guide conservation efforts. To assess distribution and habitat use of king rails along the Illinois and Upper Mississippi valleys, USA, we conducted repeated call-broadcast surveys at 83 locations in 2006 and 114 locations in 2007 distributed among 21 study sites. We detected king rails at 12 survey locations in 2006 and 14 locations in 2007, illustrating the limited distribution of king rails in this region. We found king rails concentrated at Clarence Cannon National Wildlife Refuge, an adjacent private Wetlands Reserve program site, and B. K. Leach Conservation Area, which were located in the Mississippi River floodplain in northeast Missouri. Using Program PRESENCE, we estimated detection probabilities and built models to identify habitat covariates that were important in king rail site occupancy. Habitat covariates included percentage of cover by tall (> 1 m) and short (<= 1 m) emergent vegetation, percentage of cover of woody vegetation, and interspersion of water and vegetation ( 2007 only) within 50 m of the survey location. Detection probability was 0.43 (SE = 0.12) in 2006 and 0.35 (SE = 0.03) in 2007 and was influenced by observer identity and percentage of cover by tall herbaceous vegetation. Site occupancy was 0.11 (SE = 0.04) in 2006 and 0.14 (SE = 0.04) in 2007 and was negatively influenced most by percentage of cover by woody vegetation. In addition, we found that interspersion of vegetation and water was positively related to occupancy in 2007. Thus, nesting king rails used wetlands that were characterized by high water-vegetation interspersion and little or no cover by woody vegetation. Our results suggest that biologists can improve king rail habitat by implementing management techniques that reduce woody cover and increase vegetation-water interspersion in wetlands.

Journal of Wildlife Management↗
USGS2015

Do ducks and songbirds initiate more nests when the probability of survival is greater?

Nesting chronology in grassland birds can vary by species, locality, and year. The date a nest is initiated can influence the subsequent probability of its survival in some grassland bird species. Because predation is the most significant cause of nest loss in grassland birds, we examined the relation between timing of nesting and nest survival. Periods of high nest survival that correspond with the peak of nesting activity might reflect long-term adaptations to specific predation pressures commonly recurring during certain periods of the nesting cycle. We evaluated this theory by comparing timing of nesting with date-specific nest survival rates for several duck and passerine species breeding in north-central North Dakota during 1998–2003. Nest survival decreased seasonally with date for five of the seven species we studied. We found little evidence to support consistent relations between timing of nesting, the number of nest initiations, and nest survival for any species we studied, suggesting that factors other than nest predation may better explain nesting chronology for these species. The apparent mismatch between date-specific patterns of nest survival and nest initiation underscores uncertainty about the process of avian nest site selection driven mainly by predation. Although timing of nesting differed among species, the general nesting period was fairly predictable across all years of study, suggesting the potential for research activities or management actions to be timed to take advantage of known periods when nests are active (or inactive). However, our results do not support the notion that biologists can take advantage of periods when many nests are active and survival is also high.

North Dakota↗
USGS1959

Burrowing activities of the larval lamprey

Since the appearance in 1950 of Applegate's work on the sea lamprey in Michigan (U. S. Fish and Wildl. Serv., Spec. Sci. Rept.; Fish, No. 55) and the subsequent development of means to control lampreys in the Great Lakes, biologists have accumulated much additional information on adult lampreys. Larval lampreys, however, are difficult animals to observe in the field, and many facets of their behavior are still unknown. While working with the U. S. Fish and Wildlife Service, I kept ammocetes in captivity, and was able to observe their burrowing activities.

Copeia↗
USGS1967

Aging mourning doves by outer primary wear

Many immature mourning doves ( Zenaidura macroura ) cannot be aged by the conventional white-tipped primary covert method if molt has proceeded beyond the 7th primary. A new method of aging doves in this group is based on the presence (immature) or absence (adult) of a buff-colored fringe on the tips of the 9th and 10th primaries. Experienced biologists were nearly 100 percent accurate in aging wings of 100 known-age doves from eastern and midwestern states. The technique is not as reliable for doves from southwestern United States because of added feather wear, apparently from harsh vegetative and soil conditions.

Journal of Wildlife Management↗
USGS1979

Weights of lesser snow geese taken on their winter range

Geese are assumed to accumulate fat on the winter range (Bent 1962, Williams 1967) to sustain them through the long northward migration and early part of the nesting season. However, there are no weights given in the literature of lesser snow geese ( Anser c. caerulescens ) on their winter ranges to compare with weights on the breeding grounds. For many years biologists relied on Kortright (1942) for weights of lesser snow geese, and more recently on Bellrose (1976). In the present study, snow geese from the Garwood Prairie, a rice growing area in Colorado County, Texas, were weighed to determine if weights increased before northward migration. The Garwood Prairie is a segment of the snow goose winter range near the Gulf Coast of Texas.

Texas↗
USGS2000

Simultaneous use of mark-recapture and radiotelemetry to estimate survival, movement, and capture rates

Biologists often estimate separate survival and movement rates from radio-telemetry and mark-recapture data from the same study population. We describe a method for combining these data types in a single model to obtain joint, potentially less biased estimates of survival and movement that use all available data. We furnish an example using wood thrushes ( Hylocichla mustelina ) captured at the Piedmont National Wildlife Refuge in central Georgia in 1996. The model structure allows estimation of survival and capture probabilities, as well as estimation of movements away from and into the study area. In addition, the model structure provides many possibilities for hypothesis testing. Using the combined model structure, we estimated that wood thrush weekly survival was 0.989 ± 0.007 ( ± SE). Survival rates of banded and radio-marked individuals were not different ( α [ S radioed , S banded ] =log[ S radioed / S banded ]=0.0239 ± 0.0435). Fidelity rates (weekly probability of remaining in a stratum) did not differ between geographic strata ( Ψ = 0.911 ± 0.020; α [ Ψ 11 , Ψ 22 ]=0.0161 ± 0.047), and recapture rates ( p = 0.097 ± 0.016) banded and radio-marked individuals were not different ( α [ P radioed , P banded ]=0.145 ± 0.655). Combining these data types in a common model resulted in more precise estimates of movement and recapture rates than separate estimation, but ability to detect stratum or mark-specific differences in parameters was week. We conducted simulation trials to investigate the effects of varying study designs on parameter accuracy and statistical power to detect important differences. Parameter accuracy was high (relative bias [RBIAS] <2 %) and confidence interval coverage close to nominal, except for survival estimates of banded birds for the 'off study area' stratum, which were negatively biased (RBIAS -7 to -15%) when sample sizes were small (5-10 banded or radioed animals 'released' per time interval). To provide adequate data for useful inference from this model, study designs should seek a minimum of 25 animals of each marking type observed (marked or observed via telemetry) in each time period and geographic stratum.

Journal of Wildlife Management↗
USGS2000

Factors limiting mallard brood survival in prairie pothole landscapes

In order to estimate mallard (Anas platyrhynchos) production from managed and unmanaged lands, waterfowl biologists need measurable predictors of brood survival. We evaluated effects of percent of seasonal basins holding water (WETSEAS), percent of upland landscape in perennial cover (PERNCOVER), rainfall (RAIN), daily minimum ambient temperature (TMIN), hatch date (HATCHDATE), brood age (BA; 0-7 or 8-30 days), age of brood females, and brood size on mallard brood survival in prairie pothole landscapes, and developed a predictive model using factors found to have significant effects. Sixteen of 56 radiomarked broods experienced total loss during 1,250 exposure days. Our final fitted model of brood survival contained only main effects of WETSEAS, HATCHDATE, and RAIN. Total brood loss during the first 30 days of exposure was 11.2 times more likely for broods hatched on areas with <17% WETSEAS than those on areas with >59% WETSEAS. Total brood loss was 5.2 times more likely during rainy conditions than during dry periods, and the hazard of total brood loss increased by 5% for each 1-day delay in hatching between 17 May and 12 August. High survival of mallard broods in landscapes where most seasonal basins contain water underscores the importance of maintaining seasonal wetlands as a major component of wetland complexes managed for mallard production. Because early hatched broods have higher survival, we also suggest that waterfowl managers focus their efforts on enhancing nest success of early laid clutches, especially in wet years.

Journal of Wildlife Management↗
USGS2000

Modeling annual mallard production in the prairie-parkland region

Biologists have proposed several environmental factors that might influence production of mallards ( Anas platyrhynchos ) nesting in the prairie-parkland region of the United States and Canada. These factors include precipitation, cold spring temperatures, wetland abundance, and upland breeding habitat. I used long-term historical data sets of climate, wetland numbers, agricultural land use, and size of breeding mallard populations in multiple regression analyses to model annual indices of mallard production. Models were constructed at 2 scales: a continental scale that encompassed most of the mid-continental breeding range of mallards and a stratum-level scale that included 23 portions of that same breeding range. The production index at the continental scale was the estimated age ratio of mid-continental mallards in early fall; at the stratum scale my production index was the estimated number of broods of all duck species within an aerial survey stratum. Size of breeding mallard populations in May, and pond numbers in May and July, best modeled production at the continental scale. Variables that best modeled production at the stratum scale differed by region. Crop variables tended to appear more in models for western Canadian strata; pond variables predominated in models for United States strata; and spring temperature and pond variables dominated models for eastern Canadian strata. An index of cold spring temperatures appeared in 4 of 6 models for aspen parkland strata, and in only 1 of 11 models for strata dominated by prairie. Stratum-level models suggest that regional factors influencing mallard production are not evident at a larger scale. Testing these potential factors in a manipulative fashion would improve our understanding of mallard population dynamics, improving our ability to manage the mid-continental mallard population.

Alberta, Manitoba, Montana, North Dakota, Saskatch↗
USGS2000

Condition bias of hunter-shot ring-necked ducks exposed to lead

We evaluated the condition bias hypothesis for ring-necked ducks ( Aythya collaris ) exposed to lead by testing the null hypothesis that ducks shot by hunters do not differ in physiological condition from those collected randomly from the same location. After adjusting for structural body size and log(e) concentration of blood lead, we found that overall body condition differed significantly between collection types and age classes, and marginally between sexes. Ingesta-free body mass of ring-necked ducks sampled randomly averaged 8.8% greater than those shot over decoys, and 99% of this difference was accounted for by lipid reserves. Ingesta, ash, and protein did not differ between collection types; however, after-hatching-year (AHY) birds had 5.1% more ash and 4.8% more protein than did hatching-year (HY) birds. The only sex difference was that males had 4.1% more protein than did females. Ingesta-free body mass, lipids, and protein were negatively related to concentration of blood lead. Collection type-by-concentration of blood lead and age-by-sex-by-concentration of blood lead interactions were not significant. To the extent that lead pellets persist as a cause of disease or mortality, waterfowl biologists should account for lead exposure as a possible source of condition bias when estimating population parameters and modeling survival of ring-necked ducks and other waterfowl species prone to ingest lead. These findings further underscore the problem that ingested lead shotgun pellets pose for waterfowl.

Louisiana↗