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USGS2001

[Book review] A Review and Synthesis of Effects of Alterations to the Water Temperature Regime on Freshwater Life Stages of Salmonids, with Special Reference to Chinook Salmon, by D.A. McCullough

Review of: A Review and Synthesis of Effects of Alterations to the Water Temperature Regime on Freshwater Life Stages of Salmonids, with Special Reference to Chinook Salmon. By Dale A. McCullough. Columbia River Inter-Tribal Fish Commission. 22 February 1999. REPORT #: EPA 910-R-99-010.

Transactions of the American Fisheries Society↗

USGS2004

Detection of Ehrlichia chaffeensis in adult and nymphal stage lone star ticks (Amblyomma americanum) from Long Island, New York

The lone star tick, Amblyomma americanum (L.), has increased in abundance in several regions of the northeastern United States, including areas of Long Island, NY. Adult and nymphal stage A. americanum collected from several sites on Long Island were evaluated for infection with Ehrlichia chaffeensis , the causative agent of human monocytic ehrlichiosis (HME), by using a nested polymerase chain reaction assay. Fifty-nine (12.5%) of ,17.3 adults and eight of 11.3 pools of five nymphs each (estimated minimum prevalence of infection 1.4%) contained DNA of E. chaffeensis . These data, coupled with the documented expansion of lone star tick populations in the northeastern United States, confirm that E. chaffeensis is endemic to many areas of Long Island and that HME should be considered among the differential diagnoses of the many distinct tick-borne diseases that occur in this region.

New York↗

USGS2021

Bar-tailed Godwits Limosa lapponica in Alaska: Revisiting population estimates from the staging grounds

Bar-tailed Godwits Limosa lapponica baueri breed in Alaska and spend the nonbreeding season primarily in eastern Australia and New Zealand. Long-term declines spurred recent surveys at nonbreeding sites that yielded a revised population estimate of ~126,000 godwits. We conducted aerial surveys for Bar-tailed Godwits in 2018 and 2019 at pre-migratory staging sites in western Alaska. Counts from similar surveys in 1997 accorded with counts of baueri from the nonbreeding range. Instead of relying on observer estimates of flock sizes, we enumerated 97% of our survey totals using digital photography. Our survey results differed markedly between 2018 (39,751) and 2019 (100,926), differences that reflected a relatively late autumn survey period in 2018, when some godwits were likely to have left the area, compared to 2019. In contrast to the 1997 surveys, we found few Bar-tailed Godwits at estuaries on the Alaska Peninsula. However, we counted nearly 93,000 godwits (~92% of survey total) along ~60 km of coast at the Kuskokwim River Delta in 2019, a value constituting nearly three-quarters of the subspecies’ current population estimate. Our survey totals for 2019 were in agreement with contemporaneous counts at austral nonbreeding sites, demonstrating how aerial surveys from Alaska can provide useful insights into counts conducted elsewhere in the subspecies’ range. When combined with measures of reproductive output, estimates of seasonal survival, and dedicated studies of the movement and survival of juvenile godwits, future surveys from Alaska can further contribute to efforts to determine mechanisms of population changes in baueri Bar-tailed Godwits.

Alaska↗

USGS1946

Stages and epochs of mineralization in the San Juan Mountains, Colorado, as shown at the Dunmore Mine, Ouray County, Colorado

The Dunmore lode is localized along a persistent fissure zone over two miles long and averaging nearly 100 feet in width along the length of the Dunmore claim. The fault in which the lode is located offset the pre-Cambrian quartzite and slate walls about 4,500 feet prior to deposition of the overlying thick San Juan tuff. Late Tertiary faulting extended the fissure into the San Juan tuff, dropping the south side about 80 feet. Although most of the lode crops out in the pre-Cambrian rocks, it extends upward across the profound unconformity into the tuff. The lode is complex, containing sharply marked fissure veins, sheared slate dragged into the fault zone, a sheared dike, breccia chimneys, and pebble dikes. An assemblage consisting of quartz, sericite, kaolin, and pyrite appears to be of early Tertiary age. The more productive part of the lode, however, is late Tertiary and consists of a hematite chimney inclosing a copper shoot, a tungsten chimney, and compound base-metal fissure veins. These chimneys and veins are mostly localized along early Tertiary structures, but their mineral sequences correlate them with the second stage of late Tertiary deposition recognized by Burbank in the adjoining Red Mountain and other districts. The Dunmore lode, however, is believed to have been deposited at greater depth and higher temperature and nearer to a source of supply than the lodes of these districts. In structure as well as mineral assemblages the Dunmore lode shows a connection between the chimneys and veins of the region.

Colorado↗

USGS1996

Black brant from Alaska staging and wintering in Japan

Black brant (Branta bernicla nigricans) nest in colonies in arctic Canada, Alaska, and Russia (Derksen and Ward 1993, Sedinger et al. 1993). Virtually the entire population stages in fall at Izembek Lagoon near the tip of the Alaska Peninsula (Bellrose 1976) before southward migration (Dau 1992) to winter habitats in British Columbia, Washington, Oregon, California, and Baja California (Subcommittee on Black Brant 1992). A small number of black brant winter in Japan, Korea, and China (Owen 1980). In Japan 3,000–5,000 brant of unknown origin stop over in fall, and a declining population (<1,000) of birds winter here, primarily in the northern islands (Brazil 1991, Miyabayashi et al. 1994). Here, we report sightings of brant in Japan that were marked in Alaska and propose a migration route based on historical and recent observations and weather patterns.

Alaska↗

USGS1992

Estimating transition probabilities for stage-based population projection matrices using capture-recapture data

In stage—based demography, animals are often categorized into size (or mass) classes, and size—based probabilities of surviving and changing mass classes must be estimated before demographic analyses can be conducted. In this paper, we develop two procedures for the estimation of mass transition probabilities from capture—recapture data. The first approach uses a multistate capture—recapture model that is parameterized directly with the transition probabilities of interest. Maximum likelihood estimates are then obtained numerically using program SURVIV. The second approach involvesa modification of Pollock's robust design. Estimation proceeds by conditioning on animals caught in a particualr class at time i, and then using closed models to estimate the number of these that are alive in other classes at i + 1. Both methods are illustrated by application to meadow vole, Microtus pennsylvanicus, capture—recapture data. The two methods produced reasonable estimates that were similar. Advantages of these two approaches include the directness of estimation, the absence of need for restrictive assumptions about the independence of survival and growth, the testability of assumptions, and the testability of related hypotheses of ecological interest (e.g., the hypothesis of temporal variation in transition probabilities).

Ecology↗

USGS2022

Evaluating the paleoenvironmental significance of sediment grain size in Bering Sea sediments during Marine Isotope Stage 11

Grain size is an important textural property of sediments and is widely used in paleoenvironmental studies as a means to infer changes in the sedimentary environment. However, grain size parameters are not always easy to interpret without a full understanding of the factors that influence grain size. Here, we measure grain size in sediment cores from the Bering slope and the Umnak Plateau, and review the effectiveness of different grain size parameters as proxies for sediment transport, current strength, and primary productivity, during a past warm interval (Marine Isotope Stage 11, 424-374 ka). In general, sediments in the Bering Sea are hemipelagic, making them ideal deposits for paleoenvironmental reconstructions, but there is strong evidence in the grain size distribution for contourite deposits between ~408-400 ka at the slope sites, suggesting a change in bottom current transport at this time. We show that the grain size of coarse (>150 µm) terrigenous sediment can be used effectively as a proxy for ice rafting, although it is not possible to distinguish between iceberg and sea ice rafting processes, based on grain size alone. We find that the mean grain size of bulk sediments can be used to infer changes in productivity on glacial-interglacial timescales, but the size and preservation of diatom valves also exert a control on mean grain size. Lastly, we show that the mean size of sortable silt (10-63 µm) is not a valid proxy for bottom current strength in the Bering Sea, because the input of ice-rafted silt confounds the sortable silt signal.

Alaska↗

USGS2021

Scale growth rates and scale circulus deposition rates of marine-stage Atlantic salmon Salmo salar raised under semi-natural conditions

Scale circuli yield valuable information about the life history, age, and growth of a fish. However, because circuli formation is influenced by somatic growth, the rate at which circuli are formed and the factors influencing these rates must be taken into account for the given life stage of the study species. Scales were collected from Atlantic salmon raised in marine net pens off of the coast of Maine in order to characterize the formation of scale circuli and the growth of scales during the ocean phase, and to relate circulus deposition and scale growth rate to water temperature. Fish were sampled 13 times over a period of 25 months. Neither circulus deposition rate nor growth rate were constant through time and the same trend held when circulus deposition and growth were related to thermal experience. Both rates decreased over the course of the study, presumably related to the fish reaching sexual maturity. The results of this study indicate that the pattern of circulus deposition and scale growth of Atlantic salmon vary greatly during the early marine phase, and this dynamic should be taken into account when assessing growth, especially over short time periods.

Newfoundland↗

USGS2016

Stage-discharge relations and annual nitrogen and phosphorus load estimates for stream sites in the Elk River Basin, 2006–2008

The U.S. Geological Survey, in cooperation with the Tennessee Department of Environment and Conservation (TDEC), measured continuous discharge at 4 water-quality monitoring sites and developed stage-discharge ratings for 10 additional water-quality monitoring sites in the Elk River Basin during 2006 through 2008. The discharge data were collected to support stream load assessments by TDEC. Annual nitrogen and phosphorus loads were estimated for the four sites where continuous daily discharge records were collected. Reported loads for the period 2006 through 2008 are not representative of long-term mean annual conditions at the sites in this study, however, because of severe drought conditions in the Elk River Basin during this period.

Alabama, Tennessee↗

USGS2011

The effects of Glen Canyon Dam operations on early life stages of rainbow trout in the Colorado River

The Lees Ferry reach of the Colorado River-a 16-mile segment from Glen Canyon Dam to the confluence with the Paria River-supports an important recreational rainbow trout (Oncorhynchus mykiss) fishery. In Grand Canyon, nonnative rainbow trout prey on and compete for habitat and food with native fish, such as the endangered humpback chub (Gila cypha). Experimental flow fluctuations from the dam during winter and spring 2003-5 dewatered and killed a high proportion of rainbow trout eggs in gravel spawning bars, but this mortality had no measurable effect on the abundance of juvenile fish. Flow fluctuations during summer months reduced growth of juvenile trout relative to steadier flows. A high-flow experiment in March 2008 increased both trout survival rates for early life stages and fish abundance. These findings demonstrate that Glen Canyon Dam operations directly affect the trout population in the Lees Ferry reach and could be used to regulate nonnative fish abundance to limit potential negative effects of trout on native fish in Grand Canyon.

Fact Sheet↗

USGS2006

Water-quality and lake-stage data for Wisconsin lakes, water year 2005

Open-File Report↗

USGS2016

Water-quality and lake-stage data for Wisconsin lakes, water years 2008−2011

The U.S. Geological Survey (USGS), in cooperation with local and other agencies, collects data at selected lakes throughout Wisconsin. These data, accumulated over many years, provide a data base for developing an improved understanding of the water quality of lakes. To make these data available to interested parties outside the USGS, the data are published annually in this report series. The purpose of this report is to provide information about the chemical and physical characteristics of Wisconsin lakes during water years 2008–2011. A water year is the 12-month period from October 1 through September 30. It is designated by the calendar year in which it ends. Thus, the period October 1, 2007 through September 30, 2008 is called "water year 2008." Data that have been collected at specific lakes, and information to aid in the interpretation of those data, are presented in this report for water years from 2008–2011. Data collected include measurements of in-lake water quality and lake stage. Time series of Secchi depths, surface total phosphorus and chlorophyll a concentrations collected during non-frozen periods are included for all lakes. Graphs of vertical profiles of temperature, dissolved oxygen, pH, and specific conductance are included for sites where these parameters were measured. Descriptive information for each lake includes: location of the lake, area of the lake’s watershed, period for which data are available, revisions to previously published records, and pertinent remarks. Additional data, such as streamflow and water quality in tributary and outlet streams of some of the lakes, are available via the "USGS Annual Water Data Report" Web site: http://wdr.water.usgs.gov/ .

Wisconsin↗

USGS2015

Preliminary peak stage and streamflow data at selected USGS streamgaging stations for the South Carolina flood of October 2015

Heavy rainfall occurred across South Carolina during October 1–5, 2015, as a result of an upper atmospheric low-pressure system that funneled tropical moisture from Hurricane Joaquin into the State. The storm caused major flooding from the central to the coastal areas of South Carolina. Almost 27 inches of rain fell near Mount Pleasant in Charleston County during this period. U.S. Geological Survey streamgages recorded peaks of record at 17 locations, and 15 other locations had peaks that ranked in the top 5 for the period of record. During the October 2015 flood event, U.S. Geological Survey personnel made about 140 streamflow measurements at 86 locations to verify, update, or extend existing rating curves, which are used to compute streamflow from monitored river stage.

South Carolina↗

USGS2018

Preliminary stage and streamflow data at selected U.S. Geological Survey streamgages in Maine and New Hampshire for the flood of October 30–31, 2017

Rainfall from a storm on October 24–27, 2017, and Tropical Storm Philippe on October 29–30, created conditions that led to flooding across portions of New Hampshire and western Maine. On the basis of streamflow data collected at 30 selected U.S. Geological Survey (USGS) streamgages in the Androscoggin River, Connecticut River, Merrimack River, and Saco River Basins, the storms caused minor to moderate flooding in those basins on October 30–31, 2017. During the storms, the USGS deployed hydrographers to take discrete measurements of streamflow. The measurements were used to confirm the stage-to-streamflow relation (rating curve) at the selected USGS streamgages. Following the storms, hydrographers documented high-water marks in support of indirect measurements of streamflow. Seven streamgages with greater than 50 years of streamflow data recorded preliminary streamflow peaks within the top five for the periods of record. Twelve streamgages recorded preliminary peak streamflows greater than an estimate of the 100-year streamflow based on drainage area.

Maine, New Hampshire↗

USGS2019

Peak streamflow and stages at selected streamgages on the Arkansas River in Oklahoma and Arkansas, May to June 2019

As much as 22 inches of rain fell in Oklahoma in May 2019, resulting in historic flooding along the Arkansas River in Oklahoma and Arkansas. The flooding along the Arkansas River and its tributaries that began in May continued into June 2019. Peaks of record were measured at 12 U.S. Geological Survey (USGS) streamgages on various streams in eastern and northeastern Oklahoma. This report documents the peak streamflows and stages for seven selected streamgages along the Arkansas River in Oklahoma and Arkansas. Most of the flood peaks occurred from May 26 to June 4, 2019. The historic flooding caused homes to fall into the river as a result of bank erosion, forced some towns to be evacuated, and resulted in the highest flood depths in Tulsa, Oklahoma, since 1986. Along the Arkansas River, peak streamflows were recorded at six of the seven selected USGS streamgages, with the seventh streamgage on the Arkansas River having the second highest peak of record at that site since regulation began.

Arkansas, Oklahoma↗

USGS2020

Characterization of peak streamflow and stages at selected streamgages in eastern and northeastern Oklahoma from the May to June 2019 flood event—With an emphasis on flood peaks downstream from dams and on tributaries to the Arkansas River

As much as 22 inches of rain fell in Oklahoma in May 2019, resulting in historic flooding along the Arkansas River and its tributaries in eastern and northeastern Oklahoma. The flooding along the Arkansas River and its tributaries that began in May continued into June 2019. Peaks of record were measured at nine U.S. Geological Survey (USGS) and U.S. Army Corps of Engineers (USACE) streamgages on various streams in eastern and northeastern Oklahoma. This report documents the peak streamflows and stages for 38 selected streamgages in eastern and northeastern Oklahoma and is a followup to a previous report by the USGS that documented flood peaks associated with the May 2019 flood event. Most of the flood peaks occurred from May 26 to June 4, 2019. This report includes data from streamgages on tributaries to the Arkansas River and uses modeling methods to extend the period of record for Arkansas River streamgages. The historic flooding caused homes to fall into the river as a result of bank erosion, forced some towns to be evacuated, and resulted in the highest flood depths in Tulsa, Oklahoma, since 1986. Several USGS and USACE streamgages along the Arkansas River and its tributaries recorded new peaks of record.

Oklahoma↗

USGS1963

Tests of crest-stage gage intakes

Various types of c rest-stage gages have been used by the Geological Survey. Most installations consist of a vertically mounted metal pipe, a wooden rod, an intake device, and a small amount of granulated cork. These gages are placed where elevations of flood crests are desired. Water rising and then falling in the gage leaves a high-water mark of granulated cork on the wooden rod. The elevation of this mark can be determined at a date subsequent to the date of the crest. It has been found that the high-water mark left on the rod may not represent the true elevation of the flood crest in the stream at the gage site. The difference between the true elevation of the crest at the gage and the recorded elevation will be designated drawdown if the recorded elevation is less than the true elevation, or pileup if the recorded elevation is greater than the true elevation. Tests of drawdown and pileup effects have been made in the past by Survey personnel and others. (See p. 8.) These investigations have sometimes brought forth conflicting results, probably due to the varied conditions under which the gages were tested. The purpose of this investigation was (1) to determine the pileup and drawdown characteristics of the intakes now being used by the Survey and (2) to design a better intake if existing models were found unsuitable. It was further prescribed that any new design that might result should be easily fabricated from standard pipe fittings, and should be unaffected by pileup or drawdown in excess of 0.1 foot for velocities up to about 8 feet per second.

Open-File Report↗

USGS1999

Sediment color and reflectance record from Ocean Drilling Program Hole 625B, Gulf of Mexico (marine isotope stage 5 interval)

Analysis of climate indicators from the North Atlantic, California Margin, and ice cores from Greenland suggest millennial scale climate variability is a component of earth's climate system during the last interglacial period (marine oxygen isotope stage 5). The USGS is involved in a survey of high resolution marine records covering the last interglacial period (MIS 5) to further document the variability of climate and assess the rate at which climate can change during warm intervals. The Gulf of Mexico (GOM) is an attractive area for analysis of climate variability and rapid change. Changes in the Mississippi River Basin presumably are translated to the GOM via the river and its effect on sediment distribution and type. Likewise, the summer monsoon in the southwestern US is driven by strong southerly winds. These winds may produce upwelling in the GOM which will be recorded in the sedimentary record. Several areas of high accumulation rate have been identified in the GOM. Ocean Drilling Program (ODP) Site 625 appears to meet the criteria of having a well preserved carbonate record and accumulation rate capable of discerning millennial scale changes.

Open-File Report↗