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Gravity, seismic, and geologic studies indicate that at least 9000 ft of aggregate throw along a zone of northwest-trending, high-angle faults has displaced the western Snake River Plain downward relative to highlands on the north. At least 5000 ft of movement occurred between the early and middle Pliocene. Progressively diminishing movement since then amounts to 4000 ft.
Preferential flow paths are expected in many groundwater systems and must be located because they can greatly affect contaminant transport. The fundamental characteristics of radiogenic isotope ratios in chemically evolving waters make them highly effective as preferential flow path indicators. These ratios tend to be more easily interpreted than solute-concentration data because their response to water-rock interaction is less complex. We demonstrate this approach with groundwater 87 Sr/ 86 Sr ratios in the Snake River Plain aquifer within and near the Idaho National Engineering and Environmental Laboratory. These data reveal slow-flow zones as lower 87 Sr/ 86 Sr areas created by prolonged interaction with the host basalts and a relatively fast flowing zone as a high 87 Sr/ 86 Sr area.
The Miocene Bruneau-Jarbidge and adjacent volcanic fields of the central Snake River Plain, southwest Idaho, are dominated by high-temperature rhyolitic tuffs and lavas having an aggregate volume estimated as 7000 km 3 . Samples from units representing at least 50% of this volume are strongly depleted in 18 O, with magmatic feldspar δ 18 O VSMOW (Vienna standard mean ocean water) values between −1.4‰ and 3.8‰. The magnitude of the 18 O depletion and the complete lack of any rhyolites with normal values (7‰–10‰) combine to suggest that assimilation or melting of a caldera block altered by near- contemporaneous hydrothermal activity is unlikely. Instead, we envisage generation of the high-temperature rhyolites by shallow melting of Idaho Batholith rocks, under the influence of the Yellowstone hotspot, affected by Eocene meteoric-hydrothermal events. The seeming worldwide scarcity of strongly 18 O-depleted rhyolites may simply reflect a similar scarcity of suitable crustal protoliths.
In the presence of historical data, population viability models of intermediate complexity can be parameterized and utilized to project the consequences of various management actions for endangered species. A general stochastic population dynamics model with density feedback, age structure, and autocorrelated environmental fluctuations was constructed and parameterized for best fit over 36 years of spring chinook salmon ( Oncorhynchus tshawytscha ) redd count data in five Idaho index streams. Simulations indicate that persistence of the Snake River spring chinook salmon population depends primarily on density-independent mortality. Improvement of rearing habitat, predator control, reduced fishing pressure, and improved dam passage all would alleviate density-independent mortality. The current value of the Ricker α should provide for a continuation of the status quo. A recovery of the population to 1957–1961 levels within 100 years would require an approximately 75% increase in survival and (or) fecundity. Manipulations of the Ricker β are likely to have little or no effect on persistence versus extinction, but considerable influence on population size.
We used both stomach content and stable isotope analyses to describe the feeding ecology of Siberian prawns Palaemon modestus (Heller, 1862), a non-native caridean shrimp that is a relatively recent invader of the lower Snake River. Based on identifiable prey in stomachs, the opossum shrimp Neomysis mercedis Holmes, 1896 comprised up to 34-55% (by weight) of diets of juvenile to adult P. modestus , which showed little seasonal variation. Other predominant items/taxa consumed included detritus, amphipods, dipteran larvae, and oligochaetes. Stable isotope analysis supported diet results and also suggested that much of the food consumed by P. modestus that was not identifiable came from benthic sources — predominantly invertebrates of lower trophic levels and detritus. Palaemon modestus consumption of N. mercedis may pose a competitive threat to juvenile salmon and resident fishes which also rely heavily on that prey.
Accurate delineation of lineage diversity is increasingly important, as species distributions are becoming more reduced and threatened. During the last century, the subspecies category was often used to denote phenotypic variation within a species range and to provide a framework for understanding lineage differentiation, often considered incipient speciation. While this category has largely fallen into disuse, previously recognized subspecies often serve as important units for conservation policy and management when other information is lacking. In this study, we evaluated phenotypic subspecies hypotheses within shovel-nosed snakes on the basis of genetic data and considered how evolutionary processes such as gene flow influenced possible incongruence between phenotypic and genetic patterns. We used both traditional phylogenetic and Bayesian clustering analyses to infer range-wide genetic structure and spatially explicit analyses to detect possible boundary locations of lineage contact. Multilocus analyses supported three historically isolated groups with low to moderate levels of contemporary gene exchange. Genetic data did not support phenotypic subspecies as exclusive groups, and we detected patterns of discordance in areas where three subspecies are presumed to be in contact. Based on genetic and phenotypic evidence, we suggested that species-level diversity is underestimated in this group and we proposed that two species be recognized, Chionactis occipitalis and C. annulata . In addition, we recommend retention of two subspecific designations within C. annulata ( C. a. annulata and C. a. klauberi ) that reflect regional shifts in both genetic and phenotypic variation within the species. Our results highlight the difficultly in validating taxonomic boundaries within lineages that are evolving under a time-dependent, continuous process.
Conversion and fragmentation of wildlife habitat often leads to smaller and isolated populations and can reduce a species’ ability to disperse across the landscape. As a consequence, genetic drift can quickly lower genetic variation and increase vulnerability to extirpation. For species of conservation concern, quantification of population size and connectivity can clarify the influence of genetic drift in local populations and provides important information for conservation management and recovery strategies. Here, we used genome-wide single nucleotide polymorphism (SNP) data and capture-mark-recapture methods to evaluate the genetic diversity and demography within seven focal sites of the endangered San Francisco gartersnake ( Thamnophis sirtalis tetrataenia ), a species affected by alteration and isolation of wetland habitats throughout its distribution. The primary goals were to determine the population structure and degree of genetic isolation among T . s . tetrataenia populations and estimate effective size and population abundance within sites to better understand the present and future importance of genetic drift. We also used temporally sampled datasets to examine the magnitude of genetic change over time. We found moderate population genetic structure throughout the San Francisco Peninsula that partitions sites into northern and southern regional clusters. Point estimates of both effective size and population abundance were generally small (≤ 100) for a majority of the sites, and estimates were particularly low in the northern populations. Genetic analyses of temporal datasets indicated an increase in genetic differentiation, especially for the most geographically isolated sites, and decreased genetic diversity over time in at least one site (Pacifica). Our results suggest that drift-mediated processes as a function of small population size and reduced connectivity from neighboring populations may decrease diversity and increase differentiation. Improving genetic diversity and connectivity among T . s . tetrataenia populations could promote persistence of this endangered snake.
In spring 1996 and 1997, we studied the prototype surface bypass and collector (SBC) at Lower Granite Dam on the Snake River in Washington. Our objectives were to determine the most efficient SBC configuration and to describe smolt movements and swimming behavior in the forebay. To do this, we used hydroacoustic and radiotelemetry techniques. The SBC was retrofitted onto the upstream face of the north half of the powerhouse to test the surface bypass method of diverting smolts from turbines. The SBC had three entrances, with mean velocities ranging from 0.37 to 1.92 m/s, and it discharged 113 m3/s through its outlet at Spill Bay 1, which was adjacent to the powerhouse. Different SBC configurations were created by altering the size and shape of entrances. During spring 1996 and 1997, river discharge was well above normal (123 and 154% of average, respectively). Powerhouse operations caused a strong downward component of flow upstream of the SBC. Many smolts (primarily steelhead and secondarily chinook salmon) were observed actively swimming upward in the water column. There were four times as many smolts diverted from turbines per unit volume of water with SBC flow than with spill flow, which indicated that the SBC may be an especially important bypass consideration in moderate- or low-flow years. The highest SBC efficiency (the proportion of total fish passing through the north half of the powerhouse by all routes that passed through the SBC) for any configuration tested was about 40%. Although no single SBC configuration stood out as the most efficient, the horizontal surface and maximum area configurations, or some combination of the two, are worth further investigation because they were moderately efficient.
We evaluated Renibaeterium salmoninarum infection in smolts of hatchery and wild spring-summer Chinook salmon Oncorhynchus tshawytscha sampled during most of the outmigration at Little Goose (1988) and Lower Granite dams (1988–1991) on the Snake River and at Priest Rapids and McNary dams on the Columbia River (1988–1990). We sampled 860–2,178 fish per dam each year. Homogenates of kidney–spleen tissue from all fish were tested for the presence of R. salmoninarum antigens by the enzyme-linked immunosorbent assay (ELISA), and homogenates from 10% of the fish were examined by the fluorescent antibody technique (FAT). Although only 1–11% of fish sampled at a given dam during any l year exhibited lesions characteristic of bacterial kidney disease, 86–100% of the fish tested positive for R. salmoninarum antigen by ELISA, whereas 4–17% of the fish tested positive by the FAT. During most years, a majority (68–87%) of fish testing positive by the ELISA had low R. salmoninarum antigen levels, but in 1989, 53% of positive fish from Lower Granite Dam and 52% from McNary Dam showed medium-to-high antigen levels. For most years, the highest mean antigen levels were measured in fish sampled after 75% of the total out-migrants had passed a given dam. When the largest numbers of fish were being collected for bypass or downriver transportation, mean antigen levels were relatively low.
During July and August 1995-1997, we used radiotelemetry to estimate the migration rate of 405 juvenile fall chinook salmon Oncorhynchus tshawytscha (mean fork length, 138-144 mm) through Little Goose Reservoir. Migration rates decreased significantly as fish approached the dam. Median migration rates in 1995 were 26.0 km/d through the 45.9-km reach immediately below Lower Granite Dam, 14.9 km/d through the next 14.4 km, and 0.8 km/d in the Little Goose Dam forebay (0.6 km). Median migration rates through the same reaches were consistent among years: 24.8, 13.4, and 0.8 km/d in 1996 and 20.2, 10.2, and 1.0 km/d in 1997. Most fish migrated through the upper 45.9 km within 5 d and through the lower two reaches (15.0 km) within an additional 5 d. However, 10% to 20% of the fish spent a week or more in the forebay and lower reservoir. Radio-tagged smolts displayed two behaviors after entering the forebay: crossing the forebay and upstream excursions. Study fish crossed the forebay an average of 0.6-1.0 time/h, and 157 upstream excursions were identified, 15 of which were at least 14.4 km in length. Fish behavior in the forebay was associated with declining water velocities near the dam. Detections of passive integrated transponder tags suggest that similar delays occur in other lower Snake River reservoirs. Based on studies from the Columbia River, delays for 20% of the juvenile fall chinook salmon outmigrants in each of these forebays may have contributed to high predation losses and pose a serious challenge to efforts aimed at restoring this threatened salmon stock.
A study was conducted to compare the travel times, detection probabilities, and survival of migrant hatchery-reared yearling chinook salmon Oncorhynchus tshawytscha tagged with either gastrically or surgically implanted sham radio tags (with an imbedded passive integrated transponder [PIT] tag) with those of their cohorts tagged only with PIT tags in the Snake and Columbia rivers. Juvenile chinook salmon with gastrically implanted radio tags migrated significantly faster than either surgically radio-tagged or PIT-tagged fish, while migration rates were similar among surgically radio-tagged and PIT-tagged fish. The probabilities of PIT tag detection at downstream dams varied by less than 5% and were not significantly different among the three groups. Survival was similar among treatments for median travel times of less than approximately 6 d (migration distance of 106 km). However, for both gastrically and surgically radio-tagged fish, survival was significantly less than for PIT-tagged fish, for which median travel times exceeded approximately 10 d (migration distance of 225 km). The results of this study support the use of radio tags to estimate the survival of juvenile chinook salmon having a median fork length of approximately 150 mm (range, 127-285 mm) and a median travel time of migration of less than approximately 6 d.
We studied the migratory behavior of subyearling fall Chinook salmon Oncorhynchus tshawytscha in free-flowing and impounded reaches of the Snake River to evaluate the hypothesis that velocity and turbulence are the primary causal mechanisms of downstream migration. The hypothesis states that impoundment reduces velocity and turbulence and alters the migratory behavior of juvenile Chinook salmon as a result of their reduced perception of these cues. At a constant flow (m3 /s), both velocity (km/d) and turbulence (the SD of velocity) decreased from riverine to impounded habitat as cross-sectional areas increased. We found evidence for the hypothesis that subyearling Chinook salmon perceive velocity and turbulence cues and respond to these cues by varying their behavior. The percentage of the subyearlings that moved faster than the average current speed decreased as fish made the transition from riverine reaches with high velocities and turbulence to upper reservoir reaches with low velocities and turbulence but increased to riverine levels again as the fish moved further down in the reservoir, where velocity and turbulence remained low. The migration rate (km/d) decreased in accordance with longitudinal reductions in velocity and turbulence, as predicted by the hypothesis. The variation in migration rate was better explained by a repeatedmeasures regression model containing velocity (Akaike’s information criterion ¼ 1,769.0) than a model containing flow (2,232.6). We conclude that subyearling fall Chinook salmon respond to changes in water velocity and turbulence, which work together to affect the migration rate.
Drymarchon couperi (eastern indigo snake) has experienced population declines across its range primarily as a result of extensive habitat loss, fragmentation, and degradation. Conservation efforts for D. couperi have been hindered, in part, because of informational gaps regarding the species, including a lack of data on population ecology and estimates of demographic parameters such as survival. We conducted a 2- year radiotelemetry study of D. couperi on Fort Stewart Military Reservation and adjacent private lands located in southeastern Georgia to assess individual characteristics associated with probability of survival. We used known-fate modeling to estimate survival, and an information-theoretic approach, based on a priori hypotheses, to examine intraspecific differences in survival probabilities relative to individual covariates (sex, size, size standardized by sex, and overwintering location). Annual survival in 2003 and 2004 was 0.89 (95% CI = 0.73-0.97, n = 25) and 0.72 (95% CI = 0.52-0.86; n = 27), respectively. Results indicated that body size, standardized by sex, was the most important covariate determining survival of adult D. couperi, suggesting lower survival for larger individuals within each sex. We are uncertain of the mechanisms underlying this result, but possibilities may include greater resource needs for larger individuals within each sex, necessitating larger or more frequent movements, or a population with older individuals. Our results may also have been influenced by analysis limitations because of sample size, other sources of individual variation, or environmental conditions. ?? 2009 by The Herpetologists' League, Inc.
Comparative evaluations of population dynamics in species with temporal and spatial variation in life‐history traits are rare because they require long‐term demographic time series from multiple populations. We present such an analysis using demographic data collected during the interval 1978–1996 for six populations of western terrestrial garter snakes ( Thamnophis elegans ) from two evolutionarily divergent ecotypes. Three replicate populations from a slow‐living ecotype, found in mountain meadows of northeastern California, were characterized by individuals that develop slowly, mature late, reproduce infrequently with small reproductive effort, and live longer than individuals of three populations of a fast‐living ecotype found at lakeshore locales. We constructed matrix population models for each of the populations based on 8–13 years of data per population and analyzed both deterministic dynamics based on mean annual vital rates and stochastic dynamics incorporating annual variation in vital rates. (1) Contributions of highly variable vital rates to fitness (λ s ) were buffered against the negative effects of stochastic variation, and this relationship was consistent with differences between the meadow (M‐slow) and lakeshore (L‐fast) ecotypes. (2) Annual variation in the proportion of gravid females had the greatest negative effect among all vital rates on λ s . The magnitude of variation in the proportion of gravid females and its effect on λ s was greater in M‐slow than L‐fast populations. (3) Variation in the proportion of gravid females, in turn, depended on annual variation in prey availability, and its effect on λ s was 4–23 times greater in M‐slow than L‐fast populations. In addition to differences in stochastic dynamics between ecotypes, we also found higher mean mortality rates across all age classes in the L‐fast populations. Our results suggest that both deterministic and stochastic selective forces have affected the evolution of divergent life‐history traits in the two ecotypes, which, in turn, affect population dynamics. M‐slow populations have evolved life‐history traits that buffer fitness against direct effects of variation in reproduction and that spread lifetime reproduction across a greater number of reproductive bouts. These results highlight the importance of long‐term demographic and environmental monitoring and of incorporating temporal dynamics into empirical studies of life‐history evolution.
We studied some of the relationships between federally listed fall Chinook Salmon, Oncorhynchus tshawytscha , endemic Sand Roller, Percopsis transmontana , and non-native Smallmouth Bass, Micropterus dolomieu , in Lower Granite Reservoir on the Snake River. Because of its recent reappearance and population increase, the Sand Rollers could be filling the role of a “native invader” in the reservoir food web. We speculated that Sand Rollers could either negatively affect fall Chinook Salmon by potentially competing with them for resources in shoreline habitats or, alternatively, benefit the salmon by providing a buffer against Smallmouth Bass predation. Nighttime beach seining showed that habitat use by fall Chinook Salmon and Sand Rollers overlapped completely in spring when both species were present along shorelines. Diet data from stomach samples also showed high overlap, but data on stable isotopes of 13 C and 15 N suggested that each species could be obtaining much of their dietary energy from different reservoir locations. Although habitat and diet overlap are evidence of competition, diel and spatial partitioning of resource use between fall Chinook Salmon and Sand Rollers may act to reduce potential competition. Analyses of Smallmouth Bass diets showed that fall Chinook Salmon and Sand Rollers comprised the majority of prey fish consumed by bass. Across years, as Smallmouth Bass increased their consumption of Sand Rollers (range 0.219 to 0.392 fish smallmouth -1 day -1 ), they decreased their consumption of fall Chinook Salmon (range 0.114 to 0.050 fish smallmouth -1 day -1 ). The greatest effect Sand Rollers may have on fall Chinook Salmon in Lower Granite Reservoir is to serve as a buffer against Smallmouth Bass predation.
This report summarizes results of research activities conducted in 2002 and years previous to aid in the management and recovery of fall chinook salmon Oncorhynchus tshawytscha in the Columbia River basin. The report is divided into self-standing chapters. For detailed summaries, we refer the reader to the abstracts given on the second page of each chapter. The Annual Reporting section includes information provided to fishery managers in-season and post-season, and it contains a detailed summary of life history and survival statistics on wild Snake River fall chinook salmon juveniles for the years 1992-2002. Peer-review publication remains a high priority of this research project, and it insures that our work meets high scientific standards. The Bibliography of Published Journal Articles section provides citations for peer-reviewed papers coauthored by personnel of project 199102900 that were written or published from 1998 to 2003.
Adult female ringneck snakes (Diadophis punctatus) collected from a Maryland population during five successive summers laid a total of 50 clutches in which all eggs hatched successfully under laboratory conditions. Mean hatchling mass was not significantly related to female mass or clutch size when each was evaluated in separate analyses, but was significantly related to these factors when they were evaluated in a joint analysis. Mean hatchling masses of 0.6-1 g appear most adaptive; when females are large enough to produce 1-g eggs, the tendency is to produce a larger number of relatively smaller eggs. The relationship of clutch mass to female mass was unaffected by clutch size. Reproductive effort, measured as relative clutch mass (RCM, clutch mass/female mass), increased with age, as indicated by snout-vent length (SVL); also, the relationship of clutch mass to female mass indicated that clutches equaled a larger percentage as female mass increased. Clutch size averaged 3.55 eggs and ranged from 2 to 6. Clutches were laid from 17 June through 21 July (35 d), median 2 July. Clutches hatched during the 20-d interval 8-27 August (median August 18). Larger clutches were laid earlier in the season on average than smaller clutches. Incubation periods for clutches averaged 47 (range 42-51) d. Clutches laid later in the season averaged shorter incubation periods than clutches laid earlier.
Topographical maps of the Snake River region from Lewiston, Idaho, to Huntington, Oregon. Surveyed by W.R. Chenoweth in 1920. Originally printed in 1923.