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At least 289 records · Page 16Linked to original sources

Monitoring and modeling tree bat (Genera: Lasiurus, Lasionycteris) occurrence using acoustics on structures off the mid-Atlantic coast—Implications for offshore wind development

In eastern North America, “tree bats” (Genera: Lasiurus and Lasionycteris ) are highly susceptible to collisions with wind energy turbines and are known to fly offshore during migration. This raises concern about ongoing expansion of offshore wind-energy development off the Atlantic Coast. Season, atmospheric conditions, and site-level characteristics such as local habitat (e.g., forest coverage) have been shown to influence wind turbine collision rates by bats onshore, and therefore may be related to risk offshore. Therefore, to assess the factors affecting coastal presence of bats, we continuously gathered tree bat occurrence data using stationary acoustic recorders on five structures (four lighthouses on barrier islands and one light tower offshore) off the coast of Virginia, USA, across all seasons, 2012–2019. We used generalized additive models to describe tree bat occurrence on a nightly basis. We found that sites either indicated maternity or migratory seasonal occurrence patterns associated with local roosting resources, i.e., presence of trees. Across all sites, nightly occurrence was negatively related to wind speed and positively related to temperature and visibility. Using predictive performance metrics, we concluded that our model was highly predictive for the Virginia coast. Our findings were consistent with other studies—tree bat occurrence probability and presumed mortality risk to offshore wind-energy collisions is highest on low wind speed nights, high temperature and visibility nights, and during spring and fall. The high predictive model performance we observed provides a basis for which managers, using a similar monitoring and modeling regime, could develop an effective curtailment-based mitigation strategy.

Virginia

Solar and sensor geometry, not vegetation response, drive satellite NDVI phenology in widespread ecosystems of the western United States

Satellite-derived phenology metrics are valuable tools for understanding broad-scale patterns and changes in vegetated landscapes over time. However, the extraction and interpretation of phenology in ecosystems with subtle growth dynamics can be challenging. US National Park Service monitoring of evergreen pinyon-juniper ecosystems in the western US revealed an unexpected winter-peaking phenological pattern in normalized difference vegetation index (NDVI) time-series derived from Moderate Resolution Imaging Spectroradiometer (MODIS) imagery. In this paper, we assess the validity of the winter peaks through ground-based observation of phenology and examination of solar and satellite geometry effects. To test the premise of a true vegetation response, we analyzed NDVI values extracted from a time series of ground-based digital camera (‘phenocam’) images collected September 2017 to December 2018 in a pinyon-juniper woodland in Arizona, US. Results show pinyon and juniper growth peaked in the warm season, as did the other species in the phenocam field of view. NDVI time series from four other sensors (Landsat 7, Sentinel-2, VIIRS, and Proba-V) confirmed that winter peaks in this ecosystem are not limited to MODIS products. Examination of NDVI time series (2003–2018) derived from daily 250-m MODIS data in the broader pinyon-juniper ecosystem revealed that solar-to-sensor angle, sensor zenith angle, and forward/back-scatter reflectance explained >80% of intra-annual variability. Solar-to-sensor angle exerted the greatest control, and the direction of its correlation (positive) was the opposite of that which would be expected if it were driven by vegetation greenness. Solar-to-sensor angle is controlled seasonally by solar zenith angle and daily by variations in satellite overpass geometry. We mapped winter peaks across the western US in Google Earth Engine using 500-m MODIS MCD43A4 data, which correct for reflectance differences caused by view angle. In areas where winter vegetation peaks are ecologically improbable (i.e., locations with sub-freezing December temperatures), consistent winter peaks (≥ 14 years in 2003 to 2018) are widespread in both pinyon-juniper and non-pinyon-juniper conifer ecosystems; winter peaks are common (≥ 5 years in 2003 to 2018) across areas of shrubland. We attribute winter peaks to the positive correlation of NDVI with solar-to-sensor angle and solar zenith angle in combination with sparse, vertically oriented evergreen vegetation canopies. Increasing shadow visibility has been shown to increase overall NDVI, and the prevalence of the winter peaking in evergreen western sparse canopy ecosystems is consistent with this hypothesis. The extent of winter peaking patterns may have been previously overlooked due to temporal compositing, curve fitting, and incomplete snow screening.

Arizona, California, Colorado, Idaho, Montana, Nev

Energetic status and bioelectrical impedance modeling of Arctic grayling Thymallus arcticus in interior Alaska Rivers

The energetic status of fishes represents energy stored as protein and lipids and reflects the ability of an individual to reproduce, migrate, and transition through life stages, ultimately influencing survival. However, traditional measurement methods, while highly accurate, are time consuming, expensive, and lethal, and nonlethal methods such as condition factor may not adequately characterize energetic status. We collected 161 Arctic grayling ( Thymallus arcticus ) from four interior Alaska river basins with varying hydrologic regimes during early summer and autumn seasons, and used multiple regression and model selection to evaluate the efficacy of bioelectrical impedance analysis (BIA), a nonlethal condition assessment method, to predict percent dry mass and percent lipid content estimated from proximate analysis. We found that Arctic grayling energetic status varied across seasons, by sex, and fish from sites with spawning runs of Pacific salmon had higher energy content than those from sites without salmon, potentially due to the influence of salmon-derived food subsidies. Electrical measurements explained 82% and 80% of the variability in percent dry mass and percent total lipids, respectively, and top models showed high predictive performance (observed vs. predicted root mean squared error ≤2.2%). Overall, we found the BIA approach to provide rapid, precise, and non-lethal estimates of Arctic grayling body condition. Such an approach may be useful for future work to characterize Arctic grayling bioenergetics and monitor fish condition under a rapidly changing Arctic environment.

Alaska

Contaminants in arctic snow collected over northwest Alaskan sea ice

Snow cores were collected over sea ice from four northwest Alaskan Arctic estuaries that represented the annual snowfall from the 1995-1996 season. Dissolved trace metals, major cations and anions, total mercury, and organochlorine compounds were determined and compared to concentrations in previous arctic studies. Traces (<4 nanograms per liter, ng L-1) of cis- and trans-chlordane, dimethyl 2,3,5,6-tetrachloroterephthalate, dieldrin, endosulfan II, and PCBs were detected in some samples, with endosulfan I consistently present. High chlorpyrifos concentrations (70-80 ng L-1) also were estimated at three sites. The snow was highly enriched in sulfates (69- 394 mg L-1), with high proportions of nonsea salt sulfates at three of five sites (9 of 15 samples), thus indicating possible contamination through long-distance transport and deposition of sulfate-rich atmospheric aerosols. Mercury, cadmium, chromium, molybdenum, and uranium were typically higher in the marine snow (n = 15) in relation to snow from arctic terrestrial studies, whereas cations associated with terrigenous sources, such as aluminum, frequently were lower over the sea ice. One Kasegaluk Lagoon site (Chukchi Sea) had especially high concentrations of total mercury (mean = 214 ng L-1, standard deviation = 5 ng L-1), but no methyl mercury was detected above the method detection limit (0.036 ng L-1) at any of the sites. Elevated concentrations of sulfate, mercury, and certain heavy metals might indicate mechanisms of contaminant loss from the arctic atmosphere over marine water not previously reported over land areas. Scavenging by snow, fog, or riming processes and the high content of deposited halides might facilitate the loss of such contaminants from the atmosphere. Both the mercury and chlorpyrifos concentrations merit further investigation in view of their toxicity to aquatic organisms at low concentrations.

Water, Air, & Soil Pollution

Seasonal variation in sensitivity of larval sea lampreys to the lampricide 3-trifluoromethyl-4-nitrophenol

We evaluated the sensitivity of larval sea lampreys Petromyzon marinus to the lampricide 3-trifluoromethyl-4-nitrophenol (TFM) in a series of toxicity tests in spring and summer. Although noted previously, the seasonal variation in sensitivity to TFM had never been tested as a means of reducing TFM usage in stream treatments. A preliminary study consisted of three spring and four summer static toxicity tests conducted at 12??C. A more comprehensive study consisted of 12 spring and summer paired flow-through toxicity tests conducted both at seasonal water temperatures and at 12??C. The sensitivity of larval sea lampreys to TFM was greater in spring than in summer. The preliminary static toxicity tests indicated that the concentration of TFM needed to kill larval sea lampreys in spring (May and June) was about one-half that required in summer (August); the concentrations lethal to 50% and 99.9% of the test animals (the LC50 and LC99.9 values) were less in spring than in summer. Analysis of variance of the flow-through toxicity data indicated that season significantly affected both the LC50 and LC99.9 values. For all 12 paired flow-through toxicity tests, the spring LC50 and LC99.9 values were less than the corresponding summer values. For 9 of the 12 paired flow-through toxicity tests, the dose-response toxicity lines were parallel and allowed statistical comparison of the LC50 values. The spring LC50 values were significantly lower than the summer values in eight of the nine tests. Verification of a seasonal variation in the sensitivity of larval sea lampreys to TFM will allow inclusion of this factor in the selection model currently used by both the U.S. Fish and Wildlife Service and the Department of Fisheries and Oceans-Canada to schedule lampricide stream treatments. ?? Copyright by the American Fisheries Society 2008.

North American Journal of Fisheries Management

Flow Velocity, Water Temperature, and Conductivity in Shark River Slough, Everglades National Park, Florida: August 2001-June 2002

The data-collection effort described in this report is in support of the U.S. Geological Survey (USGS) Place-Based Studies project investigating 'Forcing Effects on Flow Structure in Vegetated Wetlands of the Everglades.' Data collected at four locations in Shark River Slough, Everglades National Park, during the 2001-2002 wet season are documented in the report and methods used to process the data are described. Daily mean flow velocities, water temperatures, and specific conductance values are presented in the appendices of the report. The quality-checked and edited data have been compiled and stored on the USGS South Florida Information Access (SOFIA) website http://sofia.usgs.gov.

Open-File Report

Digital archives - Thomas M. Bown's Bighorn Basin maps: The suite of forty-four office master copies

This CD-ROM is a digitally scanned suite of master 'locality' maps produced by Dr. Thomas M. Bown. The maps are archived in the US Geological Survey Field Records. The maps feature annual compilations of newly established fossil (nineteen 7.5 degree maps) of central basin data collections. This master suite of forty-four maps represents a considerably broader geographic range within the basin. Additionally, three field seasons of data were compiled into the master suite of maps after the final editing of the Professional Paper. These maps are the culmination of Dr. Bown's Bighorn Basin research as a vertebrate paleontologist for the USGS. Data include Yale, Wyoming, Duke, Michigan and USGS localities. Practical topographic features are also indicated, such as jeep=trail access, new reservoirs, rerouted roadbeds, measured sections, fossil reconnaissance evaluations (G=good, NG=no good and H=hideous), faults, palcosol stages, and occasionally 'camp' vernacular for locality names.

Open-File Report

Juvenile Lost River and shortnose sucker year-class formation, survival, and growth in Upper Klamath Lake, Oregon, and Clear Lake Reservoir, California—2018 monitoring report

Executive Summary Populations of federally endangered Lost River ( Deltistes luxatus ) and shortnose suckers ( Chasmistes brevirostris ) in Upper Klamath Lake, Oregon, and Clear Lake Reservoir (hereinafter Clear Lake), California, are experiencing long-term decreases in abundance. Upper Klamath Lake populations are decreasing not only because of adult mortality, which is relatively low, but also because they are not being balanced by recruitment of young adult suckers into known adult spawning aggregations. Long-term monitoring of juvenile sucker populations is conducted to (1) determine if there are annual and species-specific differences in production, survival, and growth; (2) better understand when juvenile sucker mortality is greatest, and (3) help identify potential causes of high juvenile sucker mortality, particularly in Upper Klamath Lake. The U.S. Geological Survey monitoring program, which began in 2015, tracks cohorts through summer months and among years in Upper Klamath and Clear Lakes. Data on juvenile suckers captured in trap nets are used to provide information on annual variability in age-0 sucker apparent production, juvenile sucker apparent survival, apparent growth, species composition, and health. Juvenile sucker year-class strength and apparent survival were low in 2018 in Upper Klamath Lake. Most juvenile sucker mortality occurs within the first year of life. The Upper Klamath Lake year-class strength indices for Lost River and shortnose suckers in 2018 were the lowest they had been since the start of monitoring in 2015. The annual catch rates of shortnose sucker remained consistently low, whereas Lost River sucker catch rates varied. The capture of only four age-1 and older suckers from Upper Klamath Lake during the 2018 sampling season indicated low annual survival of the 2017 cohort. Annual production indices of juvenile suckers in Clear Lake are highly variable and potentially affected by seasonal connections to spawning habitat in Willow Creek. A total of seven age-0 shortnose or Klamath largescale suckers ( Catostomus snyderi ) were captured from Clear Lake in 2018, which was a relatively wet year, indicating that a small cohort was formed or that there was a delay in the recruitment of age-0 suckers. The 2018 sampling continued to detect recruitment of juveniles from the 2015 cohort to the lake. Given the dysconnectivity between Willow Creek and Clear Lake during the 2015 spawning season, the continued recruitment of young fish of this cohort to the lake may be attributed to reproduction by resident suckers in Willow Creek. Suckers younger than age-3 in Clear Lake could be identified as either shortnose or Klamath largescale suckers. A stream resident life history, if it were occurring, is consistent with these fish being Klamath largescale suckers. Survival of all distinguishable taxa of juvenile suckers is much higher in Clear Lake than in Upper Klamath Lake, with non-trivial numbers of suckers surviving to join spawning aggregations.

California, Oregon

Seasonal variation in age-specific movement patterns of red drum Sciaenops ocellatus inferred from conventional tagging and telemetry

We used 25 years of conventional tagging (n = 6173 recoveries) and 3 years of ultrasonic telemetry data (n = 105 transmitters deployed) to examine movement rates and directional preferences of four age classes of red drum Sciaenops ocellatus in North Carolina. Movement rates of tagged red drum were dependent on the age, region, and season of tagging. Age-1 and age-2 red drum tagged along the coast generally moved along the coast, while fish tagged in oligohaline waters far from the coast were primarily recovered in coastal regions in fall months. Adult (age-4+) red drum moved from overwintering grounds on the continental shelf through inlets into Pamlico Sound in spring and summer months and departed in fall. Few tagged red drum were recovered in adjacent states (0.6% of all recoveries); however, some adult red drum migrated seasonally from overwintering grounds in coastal North Carolina northward to Virginia in spring, returning in fall. Telemetered age-2 red drum displayed seasonal emigration from a small tributary, but upstream and downstream movements within the tributary were correlated with fluctuating salinity regimes and not season. Large-scale tagging and telemetry programs can provide valuable insights into the complex movement patterns of estuarine fish.

Report

Determination of Organic and Inorganic Percentages and Mass of Suspended Material at Four Sites in the Illinois River in Northwestern Arkansas and Northeastern Oklahoma, 2005-07

The Illinois River located in northwestern Arkansas and northeastern Oklahoma is influenced by point and nonpoint sources of nutrient enrichment. This has led to increased algal growth within the stream, reducing water clarity. Also, sediment runoff from fields, pastures, construction sites, and other disturbed areas, in addition to frequent streambank failure, has increased sedimentation within the stream and decreased water clarity. A study was conducted by the U.S. Geological Survey in cooperation with the Arkansas Department of Environmental Quality and the U.S. Environmental Protection Agency to characterize the increased turbidity by determining the organic and inorganic composition and mass of suspended material in the Illinois River from August 2005 through July 2007. Water-quality samples were collected at four sites on the Illinois River (listed in downstream order): near Viney Grove, Arkansas; at Savoy, Arkansas; south of Siloam Springs, Arkansas; and near Tahlequah, Oklahoma. In general, turbidity, total suspended solids, suspended-sediment concentration, organic material concentration (measured as volatile suspended solids and ash-free dry mass), and chlorophyll a concentration were the greatest in samples collected from the Illinois River at Savoy and the least in samples from the most upstream Illinois River site (near Viney Grove) and the most downstream site (near Tahlequah) from August 2005 through July 2007. For example, the suspended-sediment concentration at the Illinois River at Savoy had a median of 15 milligrams per liter, and the total suspended solids had a median of 12 milligrams per liter. The Illinois River near Tahlequah had the least suspended-sediment concentration with a median of 10 milligrams per liter and the least total suspended solids with a median of 6 milligrams per liter. The turbidity, total suspended solids, suspended-sediment concentration, organic material concentration, and chlorophyll a concentration in samples collected during high-flow events were greater than in samples collected during base-flow conditions at the Illinois River at Savoy, south of Siloam Springs, and near Tahlequah. For example, the median turbidity for the Illinois River at Savoy was 3 nephelometric turbidity ratio units during base-flow conditions and 52 nephelometric turbidity ratio units during high-flow conditions. Organic material in the Illinois River generally composed between 13 and 47 percent of the total suspended material in samples collected from August 2005 through July 2007. Therefore, most of the suspended material in samples collected from the sites was inorganic material. Overall, the highest percentage of organic material was found at the Illinois River near Viney Grove and at the Illinois River near Tahlequah. The Illinois River south of Siloam Springs had the lowest percentage of organic material among the four sites. In general, the percentage of organic material was greater in samples collected during base-flow conditions compared to samples collected during high-flow conditions. The mean seasonal concentrations and percentages of organic material were the least in the fall (September through November) in samples collected from August 2005 to July 2007 from the four Illinois River sites, while the greatest concentrations and percentages of organic material occurred at various times of the year depending on the site. The greatest concentrations of organic material occurred in the summer (June through August) in samples from sites on the Illinois River near Viney Grove, at Savoy and south of Siloam Springs, but in the spring (March through May) in samples from the Illinois River near Tahlequah. The greatest percentages of organic material (least percentages of inorganic material) occurred in the summer in samples from the site near Viney Grove, the winter and summer at the site at Savoy, in the spring, fall, and winter (December through February) at the site south of Siloam Springs, an

Scientific Investigations Report

Analysis of vegetation distribution in Interior Alaska and sensitivity to climate change using a logistic regression approach

Aim: To understand drivers of vegetation type distribution and sensitivity to climate change. Location: Interior Alaska. Methods: A logistic regression model was developed that predicts the potential equilibrium distribution of four major vegetation types: tundra, deciduous forest, black spruce forest and white spruce forest based on elevation, aspect, slope, drainage type, fire interval, average growing season temperature and total growing season precipitation. The model was run in three consecutive steps. The hierarchical logistic regression model was used to evaluate how scenarios of changes in temperature, precipitation and fire interval may influence the distribution of the four major vegetation types found in this region. Results: At the first step, tundra was distinguished from forest, which was mostly driven by elevation, precipitation and south to north aspect. At the second step, forest was separated into deciduous and spruce forest, a distinction that was primarily driven by fire interval and elevation. At the third step, the identification of black vs. white spruce was driven mainly by fire interval and elevation. The model was verified for Interior Alaska, the region used to develop the model, where it predicted vegetation distribution among the steps with an accuracy of 60-83%. When the model was independently validated for north-west Canada, it predicted vegetation distribution among the steps with an accuracy of 53-85%. Black spruce remains the dominant vegetation type under all scenarios, potentially expanding most under warming coupled with increasing fire interval. White spruce is clearly limited by moisture once average growing season temperatures exceeded a critical limit (+2 ??C). Deciduous forests expand their range the most when any two of the following scenarios are combined: decreasing fire interval, warming and increasing precipitation. Tundra can be replaced by forest under warming but expands under precipitation increase. Main conclusion: The model analyses agree with current knowledge of the responses of vegetation types to climate change and provide further insight into drivers of vegetation change. ?? 2005 Blackwell Publishing Ltd.

Journal of Biogeography

Terrain parameters of glide snow avalanches and a simple spatial glide snow avalanche model

Glide snow avalanches are dangerous and difficult to predict. Despite substantial recent research there is still inadequate understanding regarding the controls of glide snow avalanche release. Glide snow avalanches often occur in similar terrain or the same locations annually, and repeat observations and prior work suggest that specific topography may be critical. Thus, to gain a better understanding of the terrain component of these types of avalanches we examined terrain parameters associated with the specific area of glide snow avalanche release in comparison to avalanche starting zones where no glide snow avalanches were observed (i.e. non-glide snow avalanche terrain). Glide snow avalanche occurrences visible from the Going-to-the-Sun Road corridor in Glacier National Park, Montana from 2003 to 2013 are investigated using a database of all avalanche occurrences derived of daily observations each year from 1 April to 1 June. This yielded 192 glide snow avalanches in 53 distinct avalanche paths. Each avalanche was digitized in a GIS using satellite, oblique, and aerial imagery as reference. A set of 117 non-glide snow avalanche starting zones were also selected in this manner. These were start zones with avalanche activity potential, but without glide avalanches observed. Topographical parameters such as area, slope, aspect, curvature, potential incoming solar radiation, distance from ridge, and elevation were then derived for the entire dataset utilizing tools with a GIS and a 10 m DEM. Ground class and a glide factor were calculated using a four level classification index with in-situ observations and a land surface type layer in a GIS. A total of 21 terrain variables were examined using a univariate analysis between areas where glide snow avalanches occurred and areas where glide snow avalanches were never observed, despite crack formation. Only two variables were not significantly different. The significantly different variables were then used to train a classification tree to distinguish between glide and non-glide snow avalanche terrain. A 10-fold cross validated tree resulted in four decision nodes to classify the data. The nodes split on glide factor, maximum slope angle, seasonal sum of incoming solar radiation, and maximum curvature to distinguish between glide snow avalanche and non-glide snow avalanche terrain with an unweighted average accuracy (RPC) of 0.95 and probability of detection of events (POD) of 0.99. Finally, the results of the cross-validated tree were used in a GIS to examine other areas, not used in the training dataset of the classification tree, of potential glide snow avalanche release within Glacier National Park. Using this understanding of the role of topographic parameters on glide snow avalanche activity, a spatial terrain based model was developed to identify other areas with high glide snow avalanche potential outside of the immediate observation area. This simple spatial model correctly classified 78 percent of actual glide snow avalanche terrain (pixel count) of a small test area of four independent observed glide snow avalanches.

Montana

Least Bell's Vireos and Southwestern Willow Flycatchers—Breeding activities and habitat use—2023 annual report

Executive Summary We completed four protocol surveys for Least Bell’s Vireos ( Vireo bellii pusillus ; hereinafter vireo) during the breeding season, supplemented by weekly territory monitoring visits between April 6 and July 20 at the San Luis Rey Flood Risk Management Project Area (hereinafter Project Area). We identified a total of 136 territorial male vireos; 121 were confirmed as paired, and 4 were confirmed as single males. For the remaining 11 territories, we were unable to confirm breeding status. In 2023, two transient vireos were detected. The vireo population in the Project Area increased by 2 percent from 2022 to 2023. Populations in southern San Diego County also increased (by 6 percent on the Otay River) or were stable (Salt Creek/Wolf Canyon). In contrast, the vireo population at Marine Corps Base Camp Pendleton (MCBCP) and at Marine Corps Air Station decreased by 2 and 10 percent, respectively. We used an index of treatment (hereinafter Treatment Index) to evaluate the effect of ongoing vegetation clearing on the Project Area vireo population. The Treatment Index measures the cumulative effect of vegetation treatment within a territory by using the percentage area treated weighted by the number of years since treatment. We determined that the Treatment Index for an unoccupied habitat was more than four times higher than that of an occupied habitat, indicating that vireos selected habitats that were less treated in which to settle. We monitored vireo nests at three general site types: (1) within the flood channel where non-native and native vegetation removal has occurred regularly (hereinafter Channel), (2) three sites near the flood channel where limited non-native and native vegetation removal has occurred (hereinafter Off-channel), and (3) three sites that have been actively restored by planting native vegetation (hereinafter Restoration). Nesting activity was monitored in 84 territories, 4 of which were occupied by single males. Overall, 46 percent of completed nests were successful, and nest success did not differ among the three sites. In 2023, we found that territories in the Channel had greater hatching success per egg compared to Off-channel, but there were no other differences with regard to clutch size, hatching, or fledging success among Channel, Off-channel, and Restoration sites. Overall breeding success and productivity were slightly higher in 2023 than in 2022, with pairs fledging an average±standard deviation of 3.1±2.1 young and 79 percent of pairs fledging at least 1 young. To investigate if the cumulative years of treatment had an effect on vireo reproductive effort, we looked at the effects of the Treatment Index on reproductive parameters. Results from generalized linear models indicated that treatment did not have an effect on vireo nesting effort (the number of nest attempts) or the number of vireo fledglings per pair produced in 2023. Similarly, we did not detect an effect of Treatment Index on the daily survival rate (DSR) of nests. Analysis of vegetation data collected at vireo nests from 2006 to 2023 did not reveal an effect of vegetation cover at the nest on DSR. We did find, however, that Channel nests were placed higher in and farther from the edge of the host plant than Off-channel nests. Within sites, we did not detect any differences in vegetation cover between successful and unsuccessful nests. Red/arroyo willow ( Salix laevigata or Salix lasiolepis ) and mule fat ( Baccharis salicifolia ) were the species most commonly selected for nesting by vireos in all three site types. Black willow ( Salix gooddingii ) and sandbar willow ( Salix exigua ) also were commonly used. Vireos used a wider variety of species for nesting in Channel and Off-channel sites (10 and 13 species, respectively) compared to Restoration sites (2 species), although there was limited nesting in Restoration sites in 2023. There were 51 vireos banded before the 2023 breeding season that were resighted and identified at the Project Area in 2023. Two of these vireos were originally banded outside of the Project Area, at the Santa Margarita River on MCBCP. Adult birds of known age ranged from 1 to 7 years old. Between 2006 and 2023, survival of males (66±11 percent) was consistently higher than that of females (60±12 percent). First-year birds from 2006 to 2022 had an average annual survival of 15±5 percent. First-year dispersal in 2023 averaged 20.2±31.3 kilometers (km), with the longest dispersal (76.3 km) by a female that was recaptured at Wolf Canyon, a tributary to Otay River. From 2007 to 2012, most returning first-year vireos returned to the Project Area, whereas from 2014 to 2016, a greater proportion of returning birds dispersed to areas outside of the Project Area. From 2018 to 2022, the trend shifted, and more first-year vireos returned to the Project Area, except for 2022 when only one out of five first-year vireos returned to the Project Area. This trend continued in 2023: 71 percent of all first-year vireos returned to the Project Area, and 29 percent dispersed to areas outside of the Project Area (San Diego River and Wolf Canyon). Most of the returning adult male vireos showed strong between-year fidelity to their previous territories. In 2023, 94 percent of males (34/36) occupied a territory that they had defended in 2022 (within 100 meters [m]). In 2023, 33 percent of females (1/3) detected returned to a territory they occupied in 2022. The average between-year movement for returning adult vireos was 0.2±0.9 km. The amount of treatment at adults’ 2022 territories did not affect the distance adults moved to their 2023 territories. We completed four protocol surveys for the endangered Southwestern Willow Flycatcher ( Empidonax traillii extimus ; hereinafter flycatcher) at the Project Area between May 15 and July 21, 2023. In 2023, four transient Willow Flycatchers were detected in the Project Area. Two transients were detected in Reach 1, one in Reach 3a, and one in Whelan Mitigation. No resident flycatchers were documented in the Project Area in 2023. A total of 46 vegetation transects (516 points) were sampled in the Project Area in 2023. There were 71 percent (368/516) of points located in the Channel, and 22 percent (113/516) were in Upper Pond. The remaining 7 percent (35/516) of points were at the Whelan Restoration site. Foliage cover below 1 m was higher at the Channel points and Upper Pond compared to Whelan Restoration. From 1 to 3 m, foliage cover was similar at all 3 sites; however, above 3 m foliage cover was higher in the Channel compared to the Upper Pond and Whelan Restoration sites. Average canopy height was higher in the Channel (5.6±3.8 m) compared to Upper Pond (4.7±2.7 m) and Whelan Restoration (4.0±2.0 m). From 2006 to 2023, total foliage cover declined from 2 to 3 m and above 6 m in the Channel, in contrast to Upper Pond and Whelan Restoration, where little directional change in vegetation cover has occurred and where vegetation cover has largely recovered to 2006 levels. Within the Channel, the steepest declines occurred between 2009 and 2013 and between 2014 and 2016. Since 2016, we observed an increase in foliage cover, largely herbaceous, between 0 and 2 m within the Channel. Although increases were observed at all height classes after 2016, percentage cover has remained below levels measured before 2009. We sampled vegetation at 45 vireo nests and 45 random plots (territory plots) within territories in the Channel and Upper Pond after the 2023 breeding season. Vireos in the Channel established territories in areas with significantly more cover from 3 to 7 m but less cover below 1 m relative to the available habitat. Within territories, Channel vireos selected nest sites largely at random, but with significantly less foliage cover from 4 to 5 m. Vireos at Upper Pond established territories in areas with significantly more foliage cover below 4 m and from 5 to 6 m relative to available habitat. Within territories, Upper Pond vireos also selected nest sites at random except for a preference for sites with significantly less foliage cover below 1 m.

Open-File Report

Monthly variability and possible sources of nitrate in ground water beneath mixed agricultural land use, Suwannee and Lafayette Counties, Florida

In an area of mixed agricultural land use in Suwannee and Lafayette Counties of northern Florida, water samples were collected monthly from 14 wells tapping the Upper Floridan aquifer during July 1998 through June 1999 to assess hydrologic and land-use factors affecting the variability in nitrate concentrations in ground water. Unusually high amounts of rainfall in September and October 1998 (43.5 centimeters total for both months) resulted in an increase in water levels in all wells in October 1998. This was followed by unusually low amounts of rainfall during November 1998 through May 1999, when rainfall was 40.7 centimeters below 30-year mean monthly values. The presence of karst features (sinkholes, springs, solution conduits) and the highly permeable sands that overlie the Upper Floridan aquifer provide for rapid movement of water containing elevated nitrate concentrations to the aquifer. Nitrate was the dominant form of nitrogen in ground water collected at all sites and nitrate concentrations ranged from less than 0.02 to 22 milligrams per liter (mg/L), as nitrogen. Water samples from most wells showed substantial monthly or seasonal fluctuations in nitrate concentrations. Generally, water samples from wells with nitrate concentrations higher than 10 mg/L showed the greatest amount of monthly fluctuation. For example, water samples from six of eight wells had monthly nitrate concentrations that varied by at least 5 mg/L during the study period. Water from most wells with lower nitrate concentrations (less than 6 mg/L) also showed large monthly fluctuations. For instance, nitrate concentrations in water from four sites showed monthly variations of more than 50 percent. Large fluctuations in nitrate concentrations likely result from seasonal agricultural practices (fertilizer application and animal waste spreading) at a particular site. For example, an increase in nitrate concentrations observed in water samples from seven sites in February or March 1999 most likely results from application of synthetic fertilizers during the late winter months. Lower nitrate concentrations were detected in water samples from five of eight wells sampled during high-flow conditions for the Suwannee River in March 1998 compared to low-flow conditions in November 1998. Evidence for reduction of nitrate due to denitrification reactions was observed at one site (AC-1), as indicated by elevated concentrations of nitrogen gas and a corresponding increase in nitrogen isotope (d15N-NO3) values with a decrease in nitrate concentrations. Denitrification is unlikely at other sites based on the presence of dissolved oxygen concentrations greater than 2 mg/L in ground water and no observed trend between nitrate concentrations and values d15N-NO3 values. Nitrate was the dominant nitrogen species in most monthly rainfall samples; however, ammonium concentrations were similar or greater than nitrate during November and December 1998. During February through May 1999, both nitrate and ammonium concentrations were substantially higher in monthly rainfall samples collected at the study area compared to mean monthly concentrations at the Bradford Forest site located east of the study area, which is part of the National Atmospheric Deposition Program/National Trends Network. Also, higher nitrogen deposition rates in the study area compared to those at Bradford Forest could indicate that substantial amounts of ammonia are volatilized from fertilizers and animal wastes, released to the atmosphere, and incorporated as nitrate and ammonium in rainfall deposited in the middle Suwannee River Basin. Ground-water samples from most sites had d15N-NO3 values that indicated a mixture of inorganic and organic sources of nitrogen, which corresponded to multiple land uses where both synthetic fertilizers and manure are used on fields near these sites. Distinct d15N-NO3 signatures, however, were observed at some sites. For example, water samples from areas of row-crop farming as the dominant land use had d15N-NO3 values less than 4 per mil, indicating an inorganic nitrogen source such as synthetic fertilizer. In contrast, d15N-NO3 values greater than 9 per mil were found in water samples from three sites where manure from dairy and or poultry operations is spread on fields throughout the year.

Florida

Intra-urban variations in land surface phenology in a semi-arid environment

Urban vegetation is growing in importance as cities use 'green infrastructure' to mitigate the impacts of climate change, reduce extreme heat, and improve human health and comfort. However, due to the heterogeneity of city landscapes, urban vegetation experiences a diverse range of environmental conditions, potentially leading to differences in growing season timing and length within cities. Here, we investigate physical drivers of urban land surface phenology and timing within a semi-arid city (Denver, CO, USA) using four years (2018–2021) of remotely sensed vegetation indices, modelled air temperature, and land cover datasets. Within the metropolitan region study area, satellite-based vegetation index measurements indicate that growing season length is variable on sub-neighborhood spatial scales. This variability is largely due to differences in the timing of fall senescence, as opposed to early season growth. Areas with substantial fractions of irrigated land cover tend to remain greener for longer, while unirrigated and cooler areas are correlated with an earlier end to the growing season (up to ∼two months shorter). These findings complement those from non-arid cities where surface and air temperature are the dominant environmental control on phenological timing. Results here indicate the importance of soil moisture for phenology in semi-arid regions and suggest unique semi-arid urban growing season dynamics and temperature-vegetation feedbacks. These interactions have implications for water, heat, and vegetation management strategies to maximize ecosystem services in water-limited environments.

Colorado

It matters when you measure it: Using snow-cover Normalised Difference Vegetation Index (NDVI) to isolate post-fire conifer regeneration

Landsat Normalised Difference Vegetation Index (NDVI) is commonly used to monitor post-fire green-up; however, most studies do not distinguish new growth of conifer from deciduous or herbaceous species, despite potential consequences for local climate, carbon and wildlife. We found that dual season (growing and snow cover) NDVI improved our ability to distinguish conifer tree presence and density. We then examined the post-fire pattern (1984–2017) in Landsat NDVI for fires that occurred a minimum of 20 years ago (1986–1997). Points were classified into four categories depending on whether NDVI, 20 years post-fire, had returned to pre-fire values in only the growing season, only under snow cover, in both seasons or neither. We found that each category of points showed distinct patterns of NDVI change that could be used to characterise the average pre-fire and post-fire vegetation condition Of the points analysed, 43% showed a between-season disagreement if NDVI had returned to pre-fire values, suggesting that using dual-season NDVI can modify our interpretations of post-fire conditions. We also found an improved correlation between 5- and 20-year NDVI change under snow cover, potentially attributable to snow masking fast-growing herbaceous vegetation. This study suggests that snow-cover Landsat imagery can enhance characterisations of forest recovery following fire.

Arizona, Colorado, Idaho, Montana, Utah, Washingto

Physiological differences in bleaching response of the coral Porites astreoides along the Florida Keys reef tract during high-temperature stress

The Florida Keys reef tract (FKRT) has a unique geological history wherein Holocene sea-level rise and bathymetry interacted, resulting in a reef-building system with notable spatial differences in reef development. Overprinted on this geologic history, recent global and local stressors have led to degraded reefs dominated by fleshy algae, soft corals, and sponges. Here, we assessed how coral physiology (calcification rate, tissue thickness, reproduction, symbiosis, and bleaching) varies seasonally (winter vs. summer) and geographically using 40 colonies of the mustard hill coral Porites astreoides from four sites across 350 km along the FKRT from 2015 to 2017. The study coincided with a high-temperature event in late summer 2015 that caused heterogeneous levels of coral bleaching across sites. Bleaching severity differed by site, with bleaching response more aligned with heat stress retroactively calculated from local degree heating weeks than those predicted by satellites. Despite differences in temperature profiles and bleaching severity, all colonies hosted Symbiodiniaceae of the same genus (formerly Clade A and subtypes). Overall, P. astreoides at Dry Tortugas National Park, the consistently coolest site, had the highest calcification rates, symbiont cell densities, and reproductive potential (all colonies were reproductive, with most planula larvae per polyp). Corals at Dry Tortugas and Fowey Rocks Light demonstrated strong seasonality in net calcification (higher in summer) and did not express visual or partial-mortality responses from the bleaching event; in contrast, colonies in the middle and southern part of the upper keys, Sombrero Key and Crocker Reef, demonstrated similar reduced fitness from bleaching, but differential recovery trajectories following the heat stress. Identifying reefs, such as Dry Tortugas and possibly Fowey Rocks Light that may serve as heat-stress refugia, is important in selecting candidate sites for adaptive reef-management strategies, such as selective propagation and assisted gene flow, to increase coral-species adaptation to ocean warming.

Florida

Seasonal movements and demographics of the endangered White River Spinedace to inform restoration and translocation

Objective Translocation is a tool being explored to restart extirpated populations or facilitate new populations of endangered spring-­dependent fish populations. Our objective was to provide information on habitat requirements for endangered White River Spinedace Lepidomeda albivallis during all seasons of the year and the population demographics that are necessary to plan conservation translocations of this species Methods We tagged and released White River Spinedace with passive integrated transponders during four twice-a-year events. Fish were subsequently recaptured or detected on six passive antennas placed throughout the Flag Springs Complex, Nevada. We evaluated movement data to understand seasonal habitat use patterns, used a Barker model to estimate monthly survival rates, adjusted counts to account for capture probability and estimate abundance, and applied reverse-time mark–recapture models to estimate recruitment to 70 mm total length. Results White River Spinedace were more active but used similar habitats during spawning seasons than during nonspawning seasons. Median life expectancy was about 5 months after tagging, and only 1% of adult White River Spinedace survived 3–4 years posttagging. The estimated population size in the Flag Springs Complex during our sampling period (November 2020 to June 2022) was fewer than a thousand White River Spinedace, and this estimate has been steady or slightly increasing. Conclusions Complex spring habitats with water temperatures ranging about 13°C to 21°C that are free from piscivorous fish are appropriate for White River Spinedace. The White River Spinedace population at Flag Springs is small but stable or increasing in size.

Transactions of the American Fisheries Society