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Ecosystem energetic implications of parasite and free-living biomass in three estuaries

Parasites can have strong impacts but are thought to contribute little biomass to ecosystems . We quantified the biomass of free-living and parasitic species in three estuaries on the Pacific coast of California and Baja California. Here we show that parasites have substantial biomass in these ecosystems. We found that parasite biomass exceeded that of top predators. The biomass of trematodes was particularly high, being comparable to that of the abundant birds, fishes, burrowing shrimps and polychaetes. Trophically transmitted parasites and parasitic castrators subsumed more biomass than did other parasitic functional groups. The extended phenotype biomass controlled by parasitic castrators sometimes exceeded that of their uninfected hosts. The annual production of free-swimming trematode transmission stages was greater than the combined biomass of all quantified parasites and was also greater than bird biomass. This biomass and productivity of parasites implies a profound role for infectious processes in these estuaries.

Nature

Radio-telemetry evidence of re-nesting in the same season by the Marbled Murrelet

Unlike other alcids, laying of replacement eggs has not been well documented in Brachyramphus murrelets. Observations of two radio-marked Marbled Murrelets ( Brachyramphus marmoratus ) in northern California during 2001 and 2002 suggested that they can re-lay in the same breeding season. In 2001, aircraft telemetry first detected a male Marbled Murrelet at a forested inland location on 17 May. This bird alternated 24h incubation bouts with 24h at sea periods until 29 May, when data logger recordings indicated that the bird arrived at the nest at 05.17 h (PDT), but left at 05.32 h. This nesting effort had apparently failed. Sixteen days later, on 14 June this murrelet arrived in the vicinity of the first nest site at 05.19 h and remained there until 18.57 h that same evening and then left. We suspected that this event represented a second breeding effort that also failed, either near or at the site of the first effort. In 2002 a female Marbled Murrelet, first detected inland on 13 June by aircraft telemetry, alternated on the nest one day and at sea the next until 23 June when the breeding effort is presumed to have failed. This bird was again detected inland on 21 July, and alternated on the nest one day and at sea the following day until 3 August, when the radio-transmitter fell off the bird. Video recordings at the nest site indicated this second nesting attempt continued until 1 September, when the chick died of unknown causes. As in other alcids, re-laying apparently occurred 2-4 weeks after failure of the first eggs, either near or at the site of first eggs. Re-nesting may be frequent in murrelets, given the high rates of breeding failure reported.

California

Abundance and productivity of marbled murrelets (Brachyramphus marmoratus) off central California during the 2018 breeding season

Executive Summary Marbled murrelets ( Brachyramphus marmoratus ) have been listed as “endangered” by the State of California and “threatened” by the U.S. Fish and Wildlife Service since 1992 in California, Oregon, and Washington. Information regarding marbled murrelet abundance, distribution, population trends, and habitat associations is critical for risk assessment, effective management, evaluation of conservation efficacy, and ultimately, to meet Federal- and State-mandated recovery efforts for this species. During June–August 2018, the U.S. Geological Survey Western Ecological Research Center continued previously established, long-term (1999–2018), at-sea surveys to estimate abundance and productivity of marbled murrelets in U.S. Fish and Wildlife Service Conservation Zone 6 (San Francisco Bay to Point Sur in central California). Using conventional distance sampling methods, we estimated marbled murrelet abundance using 137 detections of 227 individuals observed on 9 surveys. The abundance estimated for the entire study area using all surveys in 2018 was 370 birds (95-percent confidence interval, 250–546 birds). Estimated abundance from 2018 is comparable to most prior years of study, except for 2001–03, when greater abundances were estimated. In 2018, we estimated reproductive productivity (calculated as the hatch-year [HY] to after-hatch-year [AHY] ratio) using four detections of four HY individuals observed on six surveys. After date-correcting HY and AHY counts to account for birds expected to be absent from the water while inland at nests, the date-corrected juvenile ratio was 0.047 ± 0.024 standard error. We updated a synthesized database of all Zone 6 marbled murrelet survey data since 1999 with 2018 data to allow scientists and managers to evaluate established survey methods and assess trends in abundance and productivity estimates.

California

Spring migration routes and chronology of surf scoters (Melanitta perspicillata): A synthesis of Pacific coast studies

Understanding interconnectivity among wintering, stopover, and breeding areas of migratory birds is pivotal to discerning how events occurring in each might have a cross-seasonal effect on another. Such information can guide the location and timing of conservation efforts. Thus, we examined spring migration routes, chronology, and stopover use of 85 surf scoters ( Melanitta perspicillata (L., 1758)) marked with satellite transmitters at four Pacific Flyway wintering sites: San Quintin Bay, Baja California; San Francisco Bay, California; Puget Sound, Washington; and Strait of Georgia, British Columbia. Eighty-three percent of marked scoters followed two main routes to the breeding area: a Southern Inland route involving staging in Puget Sound and Strait of Georgia and protracted inland migration, or a Northern Coastal route characterized by short movements along the Pacific coast of British Columbia and southeast Alaska with inland migration initiating from Lynn Canal and surrounding areas. Route choice was related to nesting site latitude in the Canadian Northern Boreal Forest. Data from birds tracked over 2 years indicated strong migration route fidelity, but altered chronology and stopover locations between years. Departure date varied by wintering site, but arrival and apparent settling dates were synchronous, suggesting individuals adjusted migration timing to meet an optimized reproductive schedule.

British Columbia, California, Washington

Variation in inbreeding rates across the range of Northern Spotted Owls (Strix occidentalis caurina): Insights from over 30 years of monitoring data

Inbreeding has been difficult to quantify in wild populations because of incomplete parentage information. We applied and extended a recently developed framework for addressing this problem to infer inbreeding rates in Northern Spotted Owls ( Strix occidentalis caurina ) across the Pacific Northwest, USA. Using pedigrees from 14,187 Northern Spotted Owls, we inferred inbreeding rates for 14 types of matings among relatives that produce pedigree inbreeding coefficients of F = 0.25 or F = 0.125. Inbreeding was most common in the Washington Cascades, where an estimated 15% of individuals are inbred. Inbreeding was lowest in western Oregon (3.5%) and northern California (2.7%), and intermediate for the Olympic Peninsula of Washington (6.1%). Estimates from the Olympic Peninsula were likely underestimates because of small sample sizes and the presence of few pedigrees capable of resolving inbreeding events. Most inbreeding resulted from matings between full siblings or half siblings, although a high rate of inbreeding from mother–son pairs was identified in the Olympic Peninsula. Geographic variation in inbreeding rates may reflect population declines and bottlenecks that have been detected in prior investigations. We show that there is strong selection against inbred birds. Only 3 of 44 inbred birds were later identified as parents (6.8%), whereas 2,823 of 10,380 birds that represented a comparable cross section of the data were later seen as reproducing parents (27.2%). Habitat loss and competition with Barred Owls ( S. varia ) remain primary threats to Northern Spotted Owls. However, given the negative consequences of inbreeding, Spotted Owl populations in Washington with suitable habitat and manageable numbers of Barred Owls may benefit from translocations of individuals from Oregon and California to introduce new genetic variation and reduce future inbreeding events.

California, Oregon, Washington

Timing, frequency, and duration of incubation recesses in dabbling ducks

Nest attendance is an important determinant of avian reproductive success, and identifying factors that influence the frequency and duration of incubation recesses furthers our understanding of how incubating birds balance their needs with those of their offspring. We characterized the frequency and timing (start time, end time, and duration) of incubation recesses for mallard (Anas platyrhynchos) and gadwall (Mareca strepera) hens breeding in Suisun Marsh, California, USA, and examined the influences of day of year, ambient temperature at the nest, incubation day, and clutch size on recess frequency and timing using linear mixed models. Mallard, on average, took more recesses per day (1.69 ± 0.80, mean ± standard deviation) than did gadwall (1.39 ± 0.69), and 45% of mallard nest-days were characterized by two recesses, while only 27% of gadwall nest-days were characterized by two recesses. Mallard morning recesses started at 06:14 ± 02:46, and lasted 106.11 ± 2.01 minutes, whereas mallard afternoon recesses started at 16:39 ± 02:11 and lasted 155.39 ± 1.99 minutes. Gadwall morning recesses started at 06:30 ± 02:46 and lasted 91.28 ± 2.32 minutes, and gadwall afternoon recesses started at 16:31 ± 01:57 and lasted 192.69 ± 1.89 minutes. Mallard and gadwall started recesses earlier in the day with increasing ambient temperature, but later in the day as the season progressed. Recess duration decreased as the season progressed and as clutch size increased, and increased with ambient temperature at the nest. The impending darkness of sunset appeared to be a strong cue for ending a recess and returning to the nest, because hens returned to their nests earlier than expected when recesses were expected to end after sunset. Within hens, the timing of incubation recesses was repeatable across incubation days, and was most repeatable for mallard afternoon recesses and on days in which hens took only one recess. Hens were most likely to be away from nests between 04:00 and 07:00 and between 16:00 and 19:00, therefore, investigators should search for nests between 07:00 and 16:00. Our analyses identified important factors influencing incubation recess timing in dabbling ducks, and have important implications for nest monitoring programs.

California

Energy development

Large areas of the desert southwest are currently developed or being evaluated for construction of utility-scale renewable energy projects. These projects include numerous solar and wind energy facilities some of which will be massive. Unfortunately, peer-reviewed scientific publications are not yet available to evaluate the potential effects of solar-based utility-scale renewable energy development (USRED) on any species of wildlife, including amphibians and reptiles (herpetofauna). Scientific publications on the effects of wind-based USRED and operation (USREDO) are focused almost exclusively on flying wildlife including birds and bats. To the best of our knowledge the only publications on the effects of wind-based USREDO on herpetofauna are three publications on desert tortoise ecology at a wind energy facility near Palm Springs, California. Those studies suggested that not all effects of USREDO were detrimental in the short-term. However, additional research is required to determine if wind energy operation is compatible with conservation of this long-lived species over longer periods of time.

Book chapter

Effects on wildlife of ethyl and methyl parathion applied to California rice fields

Selected rice fields on the Sacramento National Wildlife Refuge Complex were aerially sprayed one time during May or June 1982 with either ethyl (0.11 kg Al/ha) or methyl (0.84 kg AI/ha) parathion for control of tadpole shrimp, Triops longicaudatus . No sick or dead vertebrate wildlife were found or adjacent to the treated rice fields after spraying. Specimens of the following birds and mammals were assayed for brain cholinesterase (ChE) activity to determine exposure to either form of parathion; house mouse, Mus musculus ; black-tailed jackrabbit, Lepus californicus ; mallard, Anas platyrhynchos ; ring-necked pheasant, Phasianus colchicus ; American coot, Fulica americana ; and red-winged blackbird, Agelaius phoeniceus . Both mice and pheasants from methyl parathion-treated fields had overall mean ChE activities that were significantly (P < 0.05) inhibited compared with controls, and 7, 40, 54 and 57% of individual blackbirds, pheasant, mice, and coots, respectively, had inhibited brain ChE activities (i.e., less than -2 SD of control mean). Although no overall species effect was detected for ethyl parathoid treatment, pheasants (43%), coots (33%), and mice (37%) had significantly inhibited brain ChE activities. Neither of the parathion treatment appeared acutely hazardous to wildlife in or adjacent to rice fields, but sufficient information on potential hazards was obtained to warrant caution in use of these chemicals, especially methyl parathion, in rice fields.

California

Wintering waterfowl respond to Wetlands Reserve Program lands in the Central Valley of California

Daytime use by wintering waterfowl at Wetlands Reserve Program (WRP) sites within the northern Central Valley of California (CVC) increased dramatically after wetland restoration and was sustained for up to 8 years post-restoration. The magnitude of the increase in waterfowl density at WRP sites after wetland restoration was greater with greater densities of birds in the local area before restoration, lower amount of surrounding wetland habitat within a 1.5-km radius, greater increase in flooding after restoration, and closer proximity to flooded rice fields. Estimates of waterfowl distribution within areas sampled by weather surveillance radar suggest that 18 percent of wintering waterfowl use the more than 67,900 acres of restored and unrestored land enrolled in the WRP. Restored wetland habitat within WRP sites made up about 8 percent (30,360 acres) of the total wetland habitat within the CVC in 2007. Waterfowl use of flooded rice fields during the daytime and during wetter winters nearly tripled from 1995 to 2007 relative to use of natural wetland habitats. Recommendations An additional 104,000 acres of seasonal wetland restoration are needed to meet waterfowl conservation objectives in the CVC ( Central Valley Joint Venture 2006). Active restoration of hydrology and moist-soil management on WRP sites can help meet this objective. Waterfowl use of WRP sites can also be improved by locating sites close to flooded rice fields within local landscapes that have high pre-existing waterfowl abundance and relatively little wetland habitat. The assessment team developed spatially explicit decision support tools for prioritizing future WRP enrollments. The tools map the predicted post-restoration magnitude of waterfowl use based on site and local landscape variables.

California

Effects of wildlife of ethyl and methyl parathion applied to California USA rice fields

Selected rice fields on the Sacramento National Wildlife Refuge Complex were aerially sprayed one time during May or June 1982 with either ethyl (0.11 kg Al/ha) or methyl (0.84 kg AI/ha) parathion for control of tadpole shrimp, Triops longicaudatus. No sick or dead vertebrate wildlife were found or adjacent to the treated rice fields after spraying. Specimens of the following birds and mammals were assayed for brain cholinesterase (ChE) activity to determine exposure to either form of parathion; house mouse, Mus musculus; black-tailed jackrabbit, Lepus californicus; mallard, Anas platyrhynchos; ring-necked pheasant, Phasianus colchicus; American coot, Fulica americana; and red-winged blackbird, Agelaius phoeniceus. Both mice and pheasants from methyl parathion-treated fields had overall mean ChE activities that were significantly (P < 0.05) inhibited compared with controls, and 7, 40, 54 and 57% of individual blackbirds, pheasant, mice, and coots, respectively, had inhibited brain ChE activities (i.e., less than -2 SD of control mean). Although no overall species effect was detected for ethyl parathoid treatment, pheasants (43%), coots (33%), and mice (37%) had significantly inhibited brain ChE activities. Neither of the parathion treatment appeared acutely hazardous to wildlife in or adjacent to rice fields, but sufficient information on potential hazards was obtained to warrant caution in use of these chemicals, especially methyl parathion, in rice fields.

California Fish and Game

User’s guide to the North Pacific Pelagic Seabird Database 2.0

The North Pacific Pelagic Seabird Database (NPPSD) was created in 2005 to consolidate data on the oceanic distribution of marine bird species in the North Pacific. Most of these data were collected on surveys by counting species within defined areas and at known locations (that is, on strip transects). The NPPSD also contains observations of other bird species and marine mammals. The original NPPSD combined data from 465 surveys conducted between 1973 and 2002, primarily in waters adjacent to Alaska. These surveys included 61,195 sample transects with location, environment, and metadata information, and the data were organized in a flat-file format. In developing NPPSD 2.0, our goals were to add new datasets, to make significant improvements to database functionality and to provide the database online. NPPSD 2.0 includes data from a broader geographic range within the North Pacific, including new observations made offshore of the Russian Federation, Japan, Korea, British Columbia (Canada), Oregon, and California. These data were imported into a relational database, proofed, and structured in a common format. NPPSD 2.0 contains 351,674 samples (transects) collected between 1973 and 2012, representing a total sampled area of 270,259 square kilometers, and extends the time series of samples in some areas&mdash;notably the Bering Sea&mdash;to four decades. It contains observations of 16,988,138 birds and 235,545 marine mammals and is available on the NPPSD Web site. Supplementary materials include an updated set of standardized taxonomic codes, reference maps that show the spatial and temporal distribution of the survey efforts and a downloadable query tool.

Open-File Report

Cross-seasonal patterns of avian influenza virus in breeding and wintering migratory birds: a flyway perspective

The spread of avian influenza viruses (AIV) in nature is intrinsically linked with the movements of wild birds. Wild birds are the reservoirs for the virus and their migration may facilitate the circulation of AIV between breeding and wintering areas. This cycle of dispersal has become widely accepted; however, there are few AIV studies that present cross-seasonal information. A flyway perspective is critical for understanding how wild birds contribute to the persistence of AIV over large spatial and temporal scales, with implications for how to focus surveillance efforts and identify risks to public health. This study characterized spatio-temporal infection patterns in 10,389 waterfowl at two important locations within the Pacific Flyway--breeding sites in Interior Alaska and wintering sites in California's Central Valley during 2007-2009. Among the dabbling ducks sampled, the northern shoveler (Anas clypeata) had the highest prevalence of AIV at both breeding (32.2%) and wintering (5.2%) locations. This is in contrast to surveillance studies conducted in other flyways that have identified the mallard (Anas platyrhynchos) and northern pintail (Anas acuta) as hosts with the highest prevalence. A higher diversity of AIV subtypes was apparent at wintering (n=42) compared with breeding sites (n=17), with evidence of mixed infections at both locations. Our study suggests that wintering sites may act as an important mixing bowl for transmission among waterfowl in a flyway, creating opportunities for the reassortment of the virus. Our findings shed light on how the dynamics of AIV infection of wild bird populations can vary between the two ends of a migratory flyway.

Vector-Borne and Zoonotic Diseases

Ecosystem consequences of fish parasites

In most aquatic ecosystems, fishes are hosts to parasites and, sometimes, these parasites can affect fish biology. Some of the most dramatic cases occur when fishes are intermediate hosts for larval parasites. For example, fishes in southern California estuaries are host to many parasites. The most common of these parasites, Euhaplorchis californiensis , infects the brain of the killifish Fundulus parvipinnis and alters its behaviour, making the fish 10–30 times more susceptible to predation by the birds that serve as its definitive host. Parasites like E. californiensis are embedded in food webs because they require trophic transmission. In the Carpinteria Salt Marsh estuarine food web, parasites dominate the links and comprise substantial amount of biomass. Adding parasites to food webs alters important network statistics such as connectance and nestedness. Furthermore, some free-living stages of parasites are food items for free-living species. For instance, fishes feed on trematode cercariae. Being embedded in food webs makes parasites sensitive to changes in the environment. In particular, fishing and environmental disturbance, by reducing fish populations, may reduce parasite populations. Indirect evidence suggests a decrease in parasites in commercially fished species over the past three decades. In addition, environmental degradation can affect fish parasites. For these reasons, parasites in fishes may serve as indicators of environmental impacts.

Journal of Fish Biology

Wildlife values of North American ricelands

Ricelands have become an indispensable component of waterbird habitat and a leading example of integrating agricultural and natural resource management in the Mississippi Alluvial Valley, Gulf Coast, and Central California. Residual rice, weed seeds, and invertebrates provide food for many avian species during fall and winter. In North America, considerable information exists on the use of ricefields by wintering waterbirds, the value of ricelands as breeding habitat for birds, and the effects of organic chemicals on birds that- feed in ricefields. Recent research has also examined the influence of field management practices, such as winter flooding and post-harvest straw manipulation, on the suitability of ricefields for wildlife. Whereas early studies focused on detrimental effects of wildlife on rice production (e.g., crop depredation), it has become apparent that waterbirds may benefit producers by enhancing straw decomposition, reducing weed and pest pressure, and providing additional income through hunting and wildlife viewing opportunities. A comprehensive evaluation of agronomic and environmental issues is needed to meet the challenges of producing food and sustaining wildlife in twenty-first-century rice lands. Changes in agricultural markets, pressures of increased urban development, conflicting needs for limited resources such as water, endangered species constraints, and concerns over water quality must be addressed in developing a sustainable, mutually beneficial partnership among the rice industry, wildlife, and environmental interests. Research is also needed to evaluate potential reductions in the wildlife carrying capacity of ricelands resulting from new harvest and field management techniques, crop conversion, or loss of rice acreage. Key uncertainties include: (1) changes in waste grain abundance and availability due to various harvest and post-harvest management practices; (2) evaluating food depletion by birds feeding in rice6elds and derermining threshold food levels required to maintain bird use; (3) quantifying use of ricefields by nonwaterfowl species throughout the year; and (4) determining the amount and distribution of rice habitat needed to meet objectives of the North American Waterfowl Management Plan and the United States Shorebird Conservation Plan.

Book chapter

Intraspecific variation in reproductive traits of burrowing owls

Reviews of hatching asynchrony in birds recommended more studies on intraspecific variation in the extent of hatching asynchrony. We examined intraspecific variation in clutch size, laying chronology, onset of incubation, incubation period, and hatching asynchrony in burrowing owls (Athene cunicularia) in the Imperial Valley of California. Mean clutch size was 7.4 eggs and owls averaged 0.5 eggs laid per day. Females varied considerably in laying interval and onset of incubation (range = 1st to 9th egg in the clutch). The mean incubation period was 21.9 days. Hatching interval also varied greatly among females ( x = 0.8, range 0.1-2.0 days between successively hatched eggs). Past burrowing owl studies have largely overlooked the substantial intraspecific variation in these traits or have reported estimates that differ from ours. Future studies designed to identify the environmental factors that explain the large intraspecific variation in these traits will likely provide insights into the constraints on local abundance.

California

Wildfire burn severity and stream chemistry influence aquatic invertebrate and riparian avian mercury exposure in forested ecosystems

Terrestrial soils in forested landscapes represent some of the largest mercury (Hg) reserves globally. Wildfire can alter the storage and distribution of terrestrial-bound Hg via reemission to the atmosphere or mobilization in watersheds where it may become available for methylation and uptake into food webs. Using data associated with the 2007 Moonlight and Antelope Fires in California, we examined the long-term direct effects of wildfire burn severity on the distribution and magnitude of Hg concentrations in riparian food webs. Additionally, we quantified the cross-ecosystem transfer of Hg from aquatic invertebrate to riparian bird communities; and assessed the influence of biogeochemical, landscape variables, and ecological factors on Hg concentrations in aquatic and terrestrial food webs. Benthic macroinvertebrate methylmercury (MeHg) and riparian bird blood total mercury (THg) concentrations varied by 710- and 760-fold, respectively, and Hg concentrations were highest in predators. We found inconsistent relationships between Hg concentrations across and within taxa and guilds in response to stream chemical parameters and burn severity. Macroinvertebrate scraper MeHg concentrations were influenced by dissolved organic carbon (DOC); however, that relationship was moderated by burn severity (as burn severity increased the effect of DOC declined). Omnivorous bird Hg concentrations declined with increasing burn severity. Overall, taxa more linked to in situ energetic pathways may be more responsive to the biogeochemical processes that influence MeHg cycling. Remarkably, 8 years post-fire, we still observed evidence of burn severity influencing Hg concentrations within riparian food webs, illustrating its overarching role in altering the storage and redistribution of Hg and influencing biogeochemical processes.

Ecotoxicology

Abundance and productivity of marbled murrelets ( Brachyramphus marmoratus ) off central California during the 2019 breeding season

Marbled murrelets ( Brachyramphus marmoratus ) have been listed as “endangered” by the State of California and “threatened” by the U.S. Fish and Wildlife Service since 1992 in California, Oregon, and Washington. Information regarding marbled murrelet abundance, distribution, population trends, and habitat associations is critical for risk assessment, effective management, evaluation of conservation efficacy, and ultimately, to meet Federal and State recovery efforts for this species. During June–August 2019, the U.S. Geological Survey Western Ecological Research Center continued previously established, long-term (1996–2019), at-sea surveys to estimate abundance and productivity of marbled murrelets in U.S. Fish and Wildlife Service Conservation Zone 6 (San Francisco Bay to Point Sur in central California). Using conventional distance sampling methods, we estimated marbled murrelet abundance using 125 detections of 216 murrelets (mean group size, 1.72) observed on 8 surveys. The abundance estimated for the entire study area using all surveys in 2019 was 404 birds (95-percent confidence interval, 272–601 birds). Estimated abundance from 2019 is comparable to most prior years of study. In 2019, we estimated reproductive productivity (calculated as the hatch-year [HY] to after-hatch-year [AHY] ratio) using three detections of three HY murrelets observed on six surveys. After date-correcting HY and AHY counts to account for birds expected to be absent from the water while inland at nests, the date-corrected juvenile ratio was 0.025±0.020 standard error. We discuss changes in methodologies during 1996–2019 that could be addressed in re-analysis of this long-term dataset. We updated a synthesized database of all Zone 6 marbled murrelet survey data since 1999 with 2019 data to allow scientists and managers to evaluate established survey methods and assess trends in abundance and productivity estimates.

California

Artificial wetlands to augment use by estuarine birds

The value of natural wetlands to bird populations is well-recognized, and declines in waterfowl numbers are often attributed to losses in wetland area. if the destruction of wetland reduces bird populations, then adding wetland habitats might improve the situation. This idea was tested in Tijuana Estuary in the late 1980s.

California