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Visualizing wading bird optimal foraging decisions with aggregation behaviors using individual-based modeling

Foragers on patchy landscapes must efficiently balance time between searching for and consuming resources to meet their daily energetic requirements. Spatial aggregation foraging behaviors may improve foraging efficiency by sharing information on locations of resource hotspots. Wading birds are an example of patch foragers that form colonial aggregations during the breeding season to obtain sufficient prey energy to sustain themselves and their offspring each day. Here, we describe a spatially-explicit simulation model of wading bird optimal foraging that represents information sharing through visual cues. The overall purpose of the model is to describe how wading bird daily foraging and reproductive success may change with alternative water control management practices that determine spatial availability of prey for wading birds on the landscape, throughout their breeding seasons. Wading birds are simulated as individuals that operate independently, sampling and selecting among patches based on a prey density tolerance threshold, but also use information from other birds to inform their selection decisions. Foraging success is evaluated against the fundamental objectives of (a) fulfilling daily energetic demands and (b) minimizing predation exposure, by tracking individual daily energetic intake and time spent foraging. In this way, the model approximates population level dynamics of wading bird aggregations that emerge through collective decision making of birds simulated at the lower individual level. Key results of this study suggest that aggregation behaviors may improve population-level foraging success rates, and the optimal settling threshold may modulate when resources become more scarce or difficult to find. Thus, the model addresses ecological theory on the advantages of foraging in groups versus independently. This technique is appropriate for evaluating wading bird populations that forage on patchy landscapes, such as seasonally-pulsed wetlands, wherever sufficient information is available to describe (1) foraging behavior (e.g., feeding rate, flight speeds, patch selection decisions), (2) key landscape characteristics, (3) spatial distributions of prey densities among foraging patches, and (4) changes in prey densities through time. The model was designed to predict qualitative, testable spatial patterns of wading bird foraging movements which can be compared with empirical observations and empirically-derived habitat suitability models. These techniques can also be applied to other bird species, such as shorebirds, or more generally to any species that transits between discrete foraging patches.

Ecological Modelling

Accounting for seasonal patterns in bird availability prevents biased population trend estimates with advancing spring phenology

Advancing spring phenology has been observed around the world, including changes in the timing of breeding of birds. When singing rates are tied to breeding stage, the rate at which birds are available for detection by surveyors can also show seasonal patterns that may shift with spring phenology. As the timing of peak bird availability changes over years, monitoring programs that do not account for changing availability could incorrectly conclude that there is a change in population size. We used a 20-yr point-count dataset to test for relationships between bird availability and spring vegetation phenology for 27 species in boreal Alaska. Nine of 22 migratory species showed a significant effect of day of spring (DOS) on availability, usually with availability declining over the survey window (late spring and early summer). In contrast, 3 of 5 resident species showed availability increasing over the survey window. We then conducted a simulation study to evaluate how changing spring phenology could affect estimates of population trend under a static survey window. We found that including DOS in the model as a covariate of availability prevented bias in the trend estimates and did not reduce precision. However, when the model ignored the effect of DOS on availability, population trend estimates were often significantly biased when spring phenology was advancing. Our study adds to previous evidence that bird availability is often related to spring phenology, and demonstrates that failing to account for seasonal changes in availability could result in the spurious estimation of a population trend when spring phenology changes over time. In some cases, the bias could be large enough to change species status assessments under IUCN Red List Criteria. Monitoring programs for birds and other taxa with seasonally varying availability could avoid bias by simply measuring and modeling the relationship between DOS and availability.

Alaska

Projected long-term response of Southeastern birds to forest management

Numerous studies have explored the influence of forest management on avian communities empirically, but uncertainty about causal relationships between landscape patterns and temporal dynamics of bird communities calls into question how observed historical patterns can be projected into the future, particularly to assess consequences of differing management alternatives. We used the Habplan harvest scheduler to project forest conditions under several management scenarios mapped at 5-year time steps over a 40-year time span. We used empirical models of overall avian richness, richness of selected guilds, and probability of presence for selected species to predict avian community characteristics for each of the mapped landscapes generated for each 5-year time step for each management scenario. We then used time series analyses to quantify relationships between changes in avian community characteristics and management-induced changes to forest landscapes over time. Our models of avian community and species characteristics indicated habitat associations at multiple spatial scales, although landscape-level measures of habitat were generally more important than stand-level measures. Our projections showed overall avian richness, richness of Neotropical migrants, and the presence of Blue-gray Gnatcatchers and Eastern Wood-pewees varied little among management scenarios, corresponding closely to broad, overall landscape changes over time. By contrast, richness of canopy nesters, richness of cavity nesters, richness of scrub-successional associates, and the presence of Common Yellowthroats showed high temporal variability among management scenarios, likely corresponding to short-term, fine-scale changes in the landscape. Predicted temporal variability of both interior-forest and early successional birds was low in the unharvested landscape relative to that in the harvested landscape. Our results also suggested that early successional species can be sensitive to both availability and connectivity of habitat on the landscape. To increase or maintain the avian diversity, our projections indicate that forest managers need to consider landscape-scale configuration of stands, maintaining a spatially heterogeneous distribution of age classes. Our findings suggest which measures of richness or species presence may be appropriate indicators for monitoring effects of forest management on avian communities, depending on management objectives.

Forest Ecology and Management

Lead shot toxicity to passerines

This study evaluated the toxicity of a single size 7.5 lead shot to passerines. No mortalities or signs of plumbism were observed in dosed cowbirds (Molothrus ater) fed a commercial diet, but when given a more natural diet, three of 10 dosed birds died within 1 day. For all survivors from which shot were recovered, all but one excreted the shot within 24 h of dosing, whereas, the dead birds retained their shot. Shot erosion was significantly greater (P < 0.05) when weathered shot were ingested compared to new shot, and the greatest erosion was observed in those birds that died (2.2-9.7%). Blood lead concentrations of birds dosed with new shot were not significantly different (P=0.14) from those of birds exposed to weathered shot. Liver lead concentrations of birds that died ranged from 71 to 137 ppm, dry weight. Despite the short amount of time the shot was retained, songbirds may absorb sufficient lead to compromise their survival.

Environmental Pollution

Winter behavior and ecology of the Alder Flycatcher (Empidonax alnorum) in Peru

The winter ecology and behavior of Alder Flycatchers (Empidonax alnorum) were studied along the Manu, a white-water meander river in Manu National Park, Madre de Dios, Peru during October and November, 1993 to 1997. The birds occupied territories in primary-succession habitats on growing point bars. They were most common in mixed stands of Tessaria integrifolia (Asteraceae) and Gynerium sagittatum (Gramineaceae) interspersed with bare sand areas. The uneven height of the Tessaria canopy, which resulted in openings in the vegetation large enough for the birds to flycatch, was an important habitat feature. Birds obtained insects, which formed about 96% of the diet, by aerial hawking (91%), perch gleaning (6%), and hover gleaning (3%). They also fed on fruit. Territory sizes ranged from 0.04 to 0.25 ha. Of nine territories that we observed closely, six were occupied by two birds each, two by one bird each, and one by three birds. Every territory had one dominant individual who was primarily responsible for territory defense; the other birds were associates. Vocalizations given included the fee-bee-o song, a two-syllable song, and the pit note, which are also given on the breeding grounds. A series of pits given increasingly rapidly signaled a territorial interaction. In aggressive encounters, the birds (1) interacted vocally, remaining on their territories and counter calling or exchanging agitated calls; (2) moved toward a common territorial boundary and engaged in a vocal duel; or (3) the dominant chased intruders out of the territory. Chases were most common when a wave of new birds entered the area. Dominant birds, which sang the full song, were probably adult males. Immature males do not sing a full song, and females are not known to sing in nature. Associate individuals were likely females or young males.

Ornitologia Neotropical

Winter behavior and ecology of the Alder Flycatcher (Empidonax alnorum) in Peru

The winter ecology and behavior of Alder Flycatchers (Empidonax alnorum) were studied along the Manu, a white-water meander river in Manu National Park, Madre de Dios, Peru?? during October and November, 1993 to 1997. The birds occupied territories in primary-succession habitats on growing point bars. They were most common in mixed stands of Tessaria integrifolia (Asteraceae) and Gynerium sagittatum (Gramineaceae) interspersed with bare sand areas. The uneven height of the Tessaria canopy, which resulted in openings in the vegetation large enough for the birds to flycatch, was an important habitat feature. Birds obtained insects, which formed about 96% of the diet, by aerial hawking (91%), perch gleaning (6%), and hover gleaning (3%). They also fed on fruit. Territory sizes ranged from 0.04 to 0.25 ha. Of nine territories that we observed closely, six were occupied by two birds each, two by one bird each, and one by three birds. Every territory had one dominant individual who was primarily responsible for territory defense; the other birds were associates. Vocalizations given included the fee-bee-o song, a two-syllable song, nd the pit note, which are also given on the breeding grounds. A series of pits given increasingly rapidly signaled a territorial interaction. In aggressive encounters, the birds (1) interacted vocally, remaining on their territories and counter calling or exchanging agitated calls; (2) moved toward a common territorial boundary and engaged in a vocal duel; or (3) the dominant chased intruders out of the territory. Chases were most common when a wave of new birds entered the area. Dominant birds, which sang the full song, were probably adult males. Immature males do not sing a full song, and females are not known to sing in nature. Associate individuals were likely females or young males. ?? The Neotropical Ornithological Society.

Ornitologia Neotropical

Association between PCBs and lower embryonic weight in black-crowned night herons in San Francisco Bay

Reproductive problems, including congenital malformations, reduced hatching success, and decreased survival of hatchlings, have been observed in colonial-nesting water birds at the San Francisco Bay National Wildlife Refuge (SFBNWR). Twenty-four black-crowned night heron (Nycticorax nycticorax) eggs were collected from SFBNWR in 1983. Twelve of these were collected from separate nests when late-stage embryos were pipping, and an additional egg was randomly collected from each nest for organochlorine analysis. Overt anomalies and skeletal defects were not apparent. Embryonic weights (with partially absorbed yolk sacs removed) were 15% lower (p lt 0.05) in SFBNWR embryos compared to control embryos from the Patuxent Wildlife Research Center (PWRC). Crown-rump length and femur length were shorter for SFBNWR embryos. The geometric mean polychlorinated biphenyl (PCB) concentration in SFBNWR eggs was 4.1 ppm wet weight, with a range of 0.8-52.0 ppm. A negative correlation (r = - 0.61; p lt 0.05) existed between embryonic weight and log-transformed PCB residues in whole eggs collected from the same nest at SFBNWR, suggesting a possible impact of PCBs on embryonic growth. A correlation with embryonic weight did not occur for DDE (1,1-dichloro-2,2-bis(p-chlorophenyl)ethylene) residues. Liver microsomal aryl hydrocarbon hydroxylase activity was neither significantly elevated nor correlated with PCB, DDE, or PCB plus DDE log-transformed residues. It is unknown whether the apparent association between PCBs and lower weight is persistent through hatching.

Journal of Toxicology and Environmental Health

Adaptive resource management: Achieving functional eradication of invasive snakes to benefit avian conservation

Natural resource management often co-occurs with considerable uncertainty. One approach to mitigating uncertainty is through adaptive resource management (ARM), a specialized form of structured decision-making that modifies management decisions or actions through monitoring and implementation. Here, we present a case study on the attempted eradication of an invasive brown treesnake ( Boiga irregularis ) in a 5-ha enclosure on Guam with uncertainty in approach. We applied an ARM process across three field phases of snake removal and evaluated whether (1) eradication was achievable and (2) eradication was necessary to achieve an avian response. Field phases included the application of aerial toxic baits, toxicant baiting large mouse and birds, trapping with live mouse and bird lures and hand capture. We found that each removal technique improved control by either removing many individuals or targeting a subset of individuals that resisted prior control approaches. Although the effort did not result in eradication, the evaluation of identified indicators allowed for timely adjustments to removal using the ARM process. The snake removal efforts yielded an avian response in the treatment area after integrating live birds as snake lures, suggesting functional eradication of snakes may be possible. We also, however, observed a release of invasive rodents following snake control, with birds being more sensitive to the presence of snakes than rodents. Synthesis and applications . We suggest that using adaptive resource management to evaluate each phase of action in relation to established goals allowed us to measure outcomes and was successful in eliminating uncertainty in the application of control tools for wildlife conservation. We were able to create a documented and successful approach towards removing snakes inside a snake-exclusion barrier by following the ARM process.

Journal of Applied Ecology

Analysis of capture–recapture models with individual covariates using data augmentation

I consider the analysis of capture–recapture models with individual covariates that influence detection probability. Bayesian analysis of the joint likelihood is carried out using a flexible data augmentation scheme that facilitates analysis by Markov chain Monte Carlo methods, and a simple and straightforward implementation in freely available software. This approach is applied to a study of meadow voles ( Microtus pennsylvanicus ) in which auxiliary data on a continuous covariate (body mass) are recorded, and it is thought that detection probability is related to body mass. In a second example, the model is applied to an aerial waterfowl survey in which a double‐observer protocol is used. The fundamental unit of observation is the cluster of individual birds, and the size of the cluster (a discrete covariate) is used as a covariate on detection probability.

Biometrics

Use of flooded timber by waterfowl at the Montezuma National Wildlife Refuge

Waterfowl use of bottomland hardwood timber stands which were flooded and killed was studied at the Montezuma National Wildlife Refuge, Seneca Falls, New York, from 1962 to 1964. Comparisons of use were made among six habitat types containing dead timber, stumps, and no timber, and with and without emergent vegetation. An index to waterfowl use was derived by direct counts and by counts made with automatic cameras which photographed randomly selected plots in each habitat type. Movement between types was studied by observation of both marked and unmarked birds. The camera index of use showed that cut timber with emergent vegetation received the greatest overall use. Use was positively correlated with the proximity of the plot to emergent vegetation and nearest vegetative type boundary. A stand flooded for 7 years was used primarily by black ducks ( Anas rubripes ) and mallards ( A. platyrhynchos ). Use of stands flooded for 20 years was dominated by American widgeon ( Mareca americana ). Waterfowl spent more time resting than feeding in timbered areas, and more time feeding than resting in marsh areas. Young-of-the-year did not move between pools after they had reached an age of IIc (Gollop and Marshall 1954). Use by broods was greatest in areas near emergent vegetation. Flying birds used timbered areas during the daytime and non-timbered areas at night during fall. Flooded dead timber appeared to be attractive to waterfowl because it furnished abundant loafing sites.

New York

Flight altitudes of raptors in southern Africa highlight vulnerability of threatened species to wind turbines

Energy infrastructure, particularly for wind power, is rapidly expanding in Africa, creating the potential for conflict with at-risk wildlife populations. Raptor populations are especially susceptible to negative impacts of fatalities from wind energy because individuals tend to be long-lived and reproduce slowly. A major determinant of risk of collision between flying birds and wind turbines is the altitude above ground at which a bird flies. We examine 18,710 observations of flying raptors recorded in southern Africa and we evaluate, for 49 species, the frequency with which they were observed to fly at the general height of a wind turbine rotor-swept zone (50–150 m). Threatened species, especially vultures, were more likely to be observed at turbine height than were other species, suggesting that these raptors are most likely to be affected by wind power development across southern Africa. Our results highlight that threatened raptor species, particularly vultures, might be especially impacted by expanded wind energy infrastructure across southern Africa.

Frontiers in Ecology and Evolution

At-sea distribution of radio-marked Ashy Storm-Petrels Oceanodroma homochroa captured on the California Channel Islands

Small, rare and wide-ranging pelagic birds are difficult to locate and observe at sea; little is therefore known regarding individual movements and habitat affinities among many of the world's storm-petrels (Family Hydrobatidae). We re-located 57 of 70 radio-marked Ashy Storm-Petrels Oceanodroma homochroa captured at three colonies in the California Channel Islands: Scorpion Rocks (2004, 2005), Santa Barbara Island (2004) and Prince Island (2005). Between 23 July and 22 September 2004, and 5 July and 4 August 2005, we flew 29 telemetry surveys, covered more than 65 000 km2 (2004) and 43 000 km2 (2005) of open ocean from San Nicolas Island north to the Farallon Islands and obtained 215 locations from 57 storm-petrels at sea. In both years, radio-marked storm-petrels were aggregated over the continental slope from Point Conception to Point Buchon, within the western Santa Barbara Channel, and over the Santa Cruz Basin between Santa Cruz, San Nicolas and Santa Barbara islands. Individuals captured in the Channel Islands ranged more than 600 km and were located as far north as Gulf of the Farallones National Marine Sanctuary. This is the first study to use radiotelemetry to determine the at-sea distribution and movements for any storm-petrel species.

Marine Ornithology: Journal of Seabird Research an

In-flight turbulence benefits soaring birds

Birds use atmospheric updrafts to subsidize soaring flight. We observed highly variable soaring flight by Black Vultures ( Coragyps atratus ) and Turkey Vultures ( Cathartes aura ) in Virginia, USA, that was inconsistent with published descriptions of terrestrial avian flight. Birds engaging in this behavior regularly deviated vertically and horizontally from linear flight paths. We observed the soaring flight behavior of these 2 species to understand why they soar in this manner and when this behavior occurs. Vultures used this type of soaring mainly at low altitudes (<50 m), along forest edges, and when conditions were poor for thermal development. Because of the tortuous nature of this flight, we describe it as “contorted soaring.” The primary air movement suitable to subsidize flight at this altitude and under these atmospheric conditions is small-scale, shear-induced turbulence, which our results suggest can be an important resource for soaring birds because it permits continuous subsidized flight when other types of updraft are not available.

Virginia

Eviction notice: Observation of a Common Tern (Sterna hirundo) usurping an active Least Tern (Sternula antillarum) Nest

Although nest usurpation is common in some species and orders of birds, usurpation has rarely been reported for Sterninae. We observed a Sterna hirundo (Common Tern) egg in an active Sternula antillarum (Least Tern) nest with a complete clutch in a mixed-species Sterninae colony in Chesapeake Bay, MD, in May 2018. Based on observations from a game camera following usurpation, Common Terns incubated the mixed-species clutch, with no further parental care provided by the usurped Least Tern. The clutch never hatched, as the Common Terns abandoned the nest prior to the hatching. While we suspect that Common Terns usurped the Least Tern nest, alternative scenarios may explain how the Common Tern egg was documented in a Least Tern nest.

Maryland

Survival rate estimation in the presence of tag loss using joint analysis of capture-recapture and resighting data

Studies using resightings of marked birds typically make use of readily-observable tags that are not retained as well as metal legbands. We review methods for estimating survival rate with open capture-recapture / resighting models when tag loss is not negligible. All methods rely on data from double-banding studies, usually carried out as part of the resighting study by application of metal legbands to all birds marked with alternative markers. When tag loss is homogeneous, the methods of Arnason and Mills (1981) and Pollock (1981) can be used. When rates of tag loss depend on time since marking, then a cohort approach can be used and is similar to the methods appropriate for homogeneous tag loss. In addition, Kremers (1987) and Nichols et al. (1992) developed models for the joint analysis of recapture and resighting data in the presence of tag loss. We emphasize the importance of obtaining recapture data in observation-based studies in which tag loss is likely to be a problem. We discuss the allocation of effort to recaptures and resightings for such studies.

Book chapter

Observer variability in estimating numbers: An experiment

Census estimates of bird populations provide an essential framework for a host of research and management questions. However, with some exceptions, the reliability of numerical estimates and the factors influencing them have received insufficient attention. Independent of the problems associated with habitat type, weather conditions, cryptic coloration, ete., estimates may vary widely due only to intrinsic differences in observers? abilities to estimate numbers. Lessons learned in the field of perceptual psychology may be usefully applied to 'real world' problems in field ornithology. Based largely on dot discrimination tests in the laboratory, it was found that numerical abundance, density of objects, spatial configuration, color, background, and other variables influence individual accuracy in estimating numbers. The primary purpose of the present experiment was to assess the effects of observer, prior experience, and numerical range on accuracy in estimating numbers of waterfowl from black-and-white photographs. By using photographs of animals rather than black dots, I felt the results could be applied more meaningfully to field situations. Further, reinforcement was provided throughout some experiments to examine the influence of training on accuracy.

Journal of Field Ornithology

Lead poisoning in captive Andean condors (Vultur gryphus)

Elevated lead in the tissues of raptors, especially those that scavenge, is a common occurrence, and lead poisoning appears to be a significant problem in the ongoing recovery effort for California condors (Gymnogyps californianus). Elevated blood lead levels have been found in released birds, and a number of birds have died of lead poisoning. In earlier work, we dosed turkey vultures (Cathartes aura) with lead shot but found them to be a poor model for lead poisoning. In this study, we dosed four Andean condors (Vultur gryphus) with lead shot and found them to be quite sensitive, as two of the birds died and the other two exhibit signs of lead poisoning within 50 days. All lead-responsive parameters were affected, and regurgitation of dosed shot occurred only once. The response of the Andean condors appeared to mimic California condors, suggesting that once exposed to lead, the possibility of survival is poor. This is consistent with observations in the wild, where otherwise healthy birds exposed to metallic lead quickly succumb. At the very least, the release program has to maintain constant surveillance and an active lead monitoring program.

Journal of Wildlife Diseases