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USGS1995

K1-95-HW: Cruise report 1995 - Preliminary results, phase III: Sediment chemistry and biological sampling survey

Mamala Bay, off the south shore of the island of Oahu, has been used as a repository of dredged material primarily from Pearl and Honolulu Harbors for over a century. The U.S. Geological Survey, U.S. Army Corps of Engineers, and the U.S. Environmental Protection Agency are conducting an integrated study on the distribution and character of dredged materials as well as the effects of dredged material on the marine environment. A three phase study is providing information to evaluate the effects on seafloor substrate and the benthic fauna. The studies include geophysical profiling and imaging, bottom photography, sampling, chemical and physical analyses of sediment, and evaluations of the benthic population, population density, and adverse impacts to the benthic fauna. Phase 1, conducted in 1993, inventoried the seafloor via remote sensing. Sidescan sonar and subbottom profilers characterized the seafloor in and around the disposal sites, and the resulting products reveal the character and extent of the dredged material. These data were used to plan Phase 2 in 1994, a sampling program that employed subbottom profilers, video and still photography, and seafloor sampling to ground truth the sonar mosaic and identify the seafloor substrates responsible for the various acoustic signatures on the sonar images and subbottom profiles. Box coring provided the samples necessary to distinguish dredged material from native sediment, and for the chemical analyses used to determine contaminant concentrations. Phase 3 studies conducted in June of 1995 consisted of box core sampling for chemical and biological analyses. Specific studies include: infaunal taxonomy and population density, bioassay/bioaccumulation, sediment chemistry, and post-disposal resuspension and transport. The 1995 survey, conducted June 14 through 17, resulted in the collection of 39 box cores from 20 different stations. Multiple box cores were composited at 7 different locations occupied in 1994, to provide the material required for the 7 bioassay and bioaccumulation analyses currently underway (Figure 1). Seventeen of the 20 stations occupied provided the biological samples for the benthic infaunal identification and population density study conducted by Dr. Julie Brock of the University of Hawaii, and the sediment chemistry analyses conducted (and completed) by Quanterra Environmental Laboratories (Figure 1). Seven of the 20 stations occupied in 1995 were occupied in 1994, and provide the data for direct comparison of sediment chemistry at the same sites from two consecutive years. The sum total of the data collected from all three phases of the monitoring program will provide the U.S. Army Corps of Engineers and the U.S. Environmental Protection Agency with the information required to make informed decisions as to the management of the South Oahu disposal site in Mamala Bay.

Hawai'i↗

USGS1999

Physical, chemical, and biological data for selected streams in Chester County, Pennsylvania, 1981-94

Physical, chemical, and biological data were collected at 51 sampling sites in Chester County, Pa., from 1970 through 1994 as part of the Stream Conditions of Chester County Program. This report presents data collected from 1981 through 1994. Physical data include water temperature, instantaneous stream discharge, pH, alkalinity, specific conductance, and dissolved oxygen. Chemical data include laboratory determinations of nutrients, major ions, and selected metals in whole water samples and selected metals, pesticides, gross polychlorinated biphenyls (PCB's), gross polychlorinated napthalenes (PCN's), and total carbon in stream-bottom sediment samples. The biological data consists of benthic macroinvertebrate population analyses and diversity indices. Chester County is undergoing rapid urbanization as agricultural lands are converted to residential, commercial, and industrial areas. The purpose of the Stream Conditions of Chester County Program is to further the understanding of stream habitat and chemical changes in response to this urbanization.

Pennsylvania↗

USGS2005

Geological, hydrological, and biological issues related to the proposed development of a park at the confluence of the Los Angeles River and the Arroyo Seco, Los Angeles County, California

A new park is being considered for the confluence of the Los Angeles River and the Arroyo Seco in Los Angeles County, California. Components of the park development may include creation of a temporary lake on the Los Angeles River, removal of channel lining along part of the Arroyo Seco, restoration of native plants, creation of walking paths, and building of facilities such as a boat ramp and a visitor center. This report, prepared in cooperation with the Mountains Recreation and Conservancy Authority, delineates the geological, hydrological, and biological issues that may have an impact on the park development or result from development at the confluence, and identifies a set a tasks to help address these science issues. Geologic issues of concern relate to surface faulting, earthquake ground motions, liquefaction, landsliding, and induced seismicity. Hydrologic issues of concern relate to the hydraulics and water quality of both surface water and ground water. Biological issues of concern include colonization-extinction dynamics, wildlife corridors, wildlife reintroduction, non-native species, ecotoxicology, and restoration of local habitat and ecology. Potential tasks include (1) basic data collection and follow-up monitoring, and (2) statistical and probabilistic analyses and simulation modeling of the seismic, hydraulic, and ecological processes that may have the greatest impact on the park. The science issues and associated tasks delineated for the proposed confluence park will also have transfer value for river restoration in other urban settings.

Scientific Investigations Report↗

USGS2005

Physical, chemical, and biological characteristics of Sturgeon Lake, Goodhue County, Minnesota, 2003-04

The U.S. Geological Survey, in cooperation with the Prairie Island Indian Community and the Minnesota Department of Natural Resources, conducted a study of Sturgeon Lake (a backwater lake in Navigation Pool 3 of the Mississippi River) during 2003-04 to describe the physical, chemical, and biological characteristics of the lake. Riparian and shoreline areas surrounding Sturgeon Lake consist primarily of deciduous tree and shrub cover with minimal amounts of commercial or residential land use. Woody debris and aquatic vegetation are the major types of physical habitat suitable for fish and invertebrates. Among 10 bottom-sediment sampling sites, 24 organic wastewater compounds, 1 organochlorine pesticide metabolite (p,p’DDE), and total polychlorinated biphenyls (PCBs) were detected in the bottom sediments of Sturgeon Lake. The most prevalent class of compounds detected were polyaromatic hydrocarbons. Other classes of compounds detected include sterols, disinfectants, plastic components, alkylphenols, and fragrances. Three compounds detected (bisphenol A, benzo[a]pyrene, and triclosan) are considered endocrine disrupting compounds. Twenty-one and 49 invertebrate taxa were identified from 10 bottom-sediment and 6 woody-debris/vegetation samples, respectively. Most of the taxa were Diptera in the family Chironomidae. The most common invertebrate in terms of density in bottom-sediment samples was the burrowing mayfly ( Hexagenia sp.). Trichoptera in the families Hydropsychidae or Polycentropodidae were common in most of the woody-debris samples. The presence of the Hexagenia larvae in samples indicates that the bottom sediments are stable and that dissolved oxygen concentrations in the lake do not drop to acute or sub-lethal anoxic conditions. Backwater lakes such as Sturgeon Lake are important areas of habitat for aquatic organisms along the Mississippi River, and this report provides baseline physical, chemical, and biological information that resource managers can compare with future investigations.

Minnesota↗

USGS2007

Urban-Related Environmental Variables and Their Relation with Patterns in Biological Community Structure in the Fountain Creek Basin, Colorado, 2003-2005

In 2003, the U.S. Geological Survey, in cooperation with Colorado Springs City Engineering, began a study to evaluate the influence of urbanization on stream ecosystems. To accomplish this task, invertebrate, fish, stream discharge, habitat, water-chemistry, and land-use data were collected from 13 sites in the Fountain Creek basin from 2003 to 2005. The Hydrologic Index Tool was used to calculate hydrologic indices known to be related to urbanization. Response of stream hydrology to urbanization was evident among hydrologic variables that described stormflow. These indices included one measurement of high-flow magnitude, two measurements of high-flow frequency, and one measurement of stream flashiness. Habitat and selected nonstormflow water chemistry were characterized at each site. Land-use data were converted to estimates of impervious surface cover and used as the measure of urbanization annually. Correlation analysis (Spearman?s rho) was used to identify a suite of nonredundant streamflow, habitat, and water-chemistry variables that were strongly associated (rho > 0.6) with impervious surface cover but not strongly related to elevation (rho < 0.60). An exploratory multivariate analysis (BIO-ENV, PRIMER ver 6.1, Plymouth, UK) was used to create subsets of eight urban-related environmental variables that described patterns in biological community structure. The strongest and most parsimonious subset of variables describing patterns in invertebrate community structure included high flood pulse count, lower bank capacity, and nutrients. Several other combinations of environmental variables resulted in competing subsets, but these subsets always included the three variables found in the most parsimonious list. This study found that patterns in invertebrate community structure from 2003 to 2005 in the Fountain Creek basin were associated with a variety of environmental characteristics influenced by urbanization. These patterns were explained by a combination of hydrologic, habitat, and water-chemistry variables. Fish community structure showed weaker links between urban-related environmental variables and biological patterns. A conceptual model was developed that showed the influence of urban-related environmental variables and their relation to fish and invertebrate assemblages. This model should prove helpful in guiding future studies on the impacts of urbanization on aquatic systems. Long-term monitoring efforts may be needed in other drainages along the Front Range of Colorado to link urban-related variables to aquatic communities in transition zone streams.

Scientific Investigations Report↗

USGS2009

Water-Quality and Biological Characteristics and Responses to Agricultural Land Retirement in Three Streams of the Minnesota River Basin, Water Years 2006-08

Water-quality and biological characteristics in three streams in the Minnesota River Basin were assessed using data collected during water years 2006-08. The responses of nutrient concentrations, suspended-sediment concentrations, and biological characteristics to agricultural land retirement also were assessed. In general, total nitrogen, suspended-sediment, and chlorophyll-a concentrations, and fish resource quality improved with increasing land retirement. The Chetomba Creek, West Fork Beaver Creek, and South Branch Rush River subbasins, which range in size from about 200 to 400 square kilometers, have similar geologic and hydrologic settings but differ with respect to the amount, type, and location of retired agricultural land. Total nitrogen concentrations were largest, with a mean of 15.0 milligrams per liter (mg/L), in water samples from the South Branch Rush River, a subbasin with little to no agricultural land retirement; total nitrogen concentrations were smaller in samples from Chetomba Creek (mean of 10.6 mg/L) and West Fork Beaver Creek (mean of 7.9 mg/L), which are subbasins with more riparian or upland land retirement at the basin scale. Total phosphorus concentrations were not related directly to differing land-retirement percentages with mean concentrations at primary data-collection sites of 0.259 mg/L in the West Fork Beaver Creek subbasin, 0.164 mg/L in the Chetomba Creek subbasin, and 0.180 mg/L in the South Branch Rush River subbasin. Temporal variation in water quality was characterized using data from in-stream water-quality monitors and storm-sediment data. Fish data indicate better resource quality for the West Fork Beaver Creek subbasin than for other subbasins likely due to a combination of factors, including habitat quality, food resources, and dissolved oxygen characteristics. Index of biotic integrity (IBI) scores increased as local land-retirement percentages (within 50 and 100 meters of the streams) increased. Data and analysis from this study can be used to evaluate the success of agricultural management practices and land-retirement programs for improving stream quality.

Scientific Investigations Report↗

USGS2010

Characterization of water quality and biological communities, Fish Creek, Teton County, Wyoming, 2007-08

Fish Creek, a tributary to the Snake River, is about 25 river kilometers long and is located in Teton County in western Wyoming near the town of Wilson. Public concern about nuisance growths of aquatic plants in Fish Creek have been increasing in recent years. To address this concern, the U.S. Geological Survey conducted a study in cooperation with the Teton Conservation District to characterize the water quality and biological communities in Fish Creek. Water-quality samples were collected for analyses of physical properties and water chemistry (nutrients, nitrate isotopes, and wastewater chemicals) between March 2007 and October 2008 from seven surface-water sites and three groundwater wells. During this same period, aquatic plant and macroinvertebrate samples were collected and habitat characteristics were measured at the surface-water sites. The main objectives of this study were to (1) evaluate nutrient concentrations (that influence biological indicators of eutrophication) and potential sources of nutrients by using stable isotope analysis and other indicator chemicals (such as caffeine and disinfectants) that could provide evidence of anthropogenic sources, such as wastewater or septic tank contamination in Fish Creek and adjacent groundwater, and (2) characterize the algal, macrophyte, and macroinvertebrate communities and habitat of Fish Creek. Nitrate was the dominant species of dissolved nitrogen present in all samples and was the only bioavailable species detected at concentrations greater than the laboratory reporting level in all surface-water samples. Average concentrations of dissolved nitrate in surface water were largest in samples collected from the two sites with seasonal flow near Teton Village and decreased downstream; the smallest concentration was at downstream site A-Wck. Concentrations of dissolved nitrate in groundwater were consistently greater than concentrations in corresponding surface-water sites during the same sampling event. Orthophosphate was the primary dissolved species of phosphorus present in all surface-water and groundwater samples. The average concentration of dissolved orthophosphate in surface water was largest in samples collected from near Teton Village; samples from all other sites had similar average concentrations. Concentrations of dissolved orthophosphate in groundwater also were typically greater than concentrations in corresponding surface-water sites during the same sampling event. The aquatic plant communities in Fish Creek typically were composed of a mixture of macrophytes, macroalgae, microalgae, and moss. The composition of the aquatic plant community in Fish Creek appeared to shift in the downstream direction in 2007. On average, the proportion of macrophytes ranged from about 1 percent at site A-R1U, the most upstream site, to 54 percent of the plant community at site A-R6D, the farthest downstream site sampled during 2007. The downstream increase in macrophytes was accompanied by a downstream decrease in microalgae. The average proportion of microalgae ranged from 80 percent at site A-R1U to 24 percent at site A-R6D. The proportion of the macroalgae Cladophora in the aquatic plant community was relatively high at sites A-Wck and A-R3D in both 2007 and 2008.

Scientific Investigations Report↗

USGS2011

Coastal and lower Elwha River, Washington, prior to dam removal--history, status, and defining characteristics: Chapter 1 in Coastal habitats of the Elwha River, Washington--biological and physical patterns and processes prior to dam removal

Characterizing the physical and biological characteristics of the lower Elwha River, its estuary, and adjacent nearshore habitats prior to dam removal is essential to monitor changes to these areas during and following the historic dam-removal project set to begin in September 2011. Based on the size of the two hydroelectric projects and the amount of sediment that will be released, the Elwha River in Washington State will be home to the largest river restoration through dam removal attempted in the United States. Built in 1912 and 1927, respectively, the Elwha and Glines Canyon Dams have altered key physical and biological characteristics of the Elwha River. Once abundant salmon populations, consisting of all five species of Pacific salmon, are restricted to the lower 7.8 river kilometers downstream of Elwha Dam and are currently in low numbers. Dam removal will reopen access to more than 140 km of mainstem, flood plain, and tributary habitat, most of which is protected within Olympic National Park. The high capture rate of river-borne sediments by the two reservoirs has changed the geomorphology of the riverbed downstream of the dams. Mobilization and downstream transport of these accumulated reservoir sediments during and following dam removal will significantly change downstream river reaches, the estuary complex, and the nearshore environment. To introduce the more detailed studies that follow in this report, we summarize many of the key aspects of the Elwha River ecosystem including a regional and historical context for this unprecedented project.

Washington↗

USGS2011

Aquatic ecology of the Elwha River estuary prior to dam removal: Chapter 7 in Coastal habitats of the Elwha River, Washington--biological and physical patterns and processes prior to dam removal

The removal of two long-standing dams on the Elwha River in Washington State will initiate a suite of biological and physical changes to the estuary at the river mouth. Estuaries represent a transition between freshwater and saltwater, have unique assemblages of plants and animals, and are a critical habitat for some salmon species as they migrate to the ocean. This chapter summarizes a number of studies in the Elwha River estuary, and focuses on physical and biological aspects of the ecosystem that are expected to change following dam removal. Included are data sets that summarize (1) water chemistry samples collected over a 16 month period; (2) beach seining activities targeted toward describing the fish assemblage of the estuary and migratory patterns of juvenile salmon; (3) descriptions of the aquatic and terrestrial invertebrate communities in the estuary, which represent an important food source for juvenile fish and are important water quality indicators; and (4) the diet and growth patterns of juvenile Chinook salmon in the lower Elwha River and estuary. These data represent baseline conditions of the ecosystem after nearly a century of changes due to the dams and will be useful in monitoring the changes to the river and estuary following dam removal.

Washington↗

USGS2012

Hydrologic, water-quality, and biological characteristics of the North Fork Flathead River, Montana, water years 2007-2008

In water year 2007, the U.S. Geological Survey, in cooperation with the National Park Service, began a 2-year study to collect hydrologic, water-quality, and biological data to provide a baseline characterization of the North Fork Flathead River from the United States-Canada border to its confluence with the Middle Fork of the Flathead River near Columbia Falls, Montana. Although mining in the Canadian portion of the North Fork Basin was banned in 2010 by a Memorandum of Understanding issued by the Province of British Columbia, baseline characterization was deemed important for the evaluation of any potential future changes in hydrology, water quality, or aquatic biology in the basin. The North Fork Basin above Columbia Falls (including Canada) drains an area of 1,564 square miles, and the study area encompasses the portion of the basin in Montana, which is 1,126 square miles. Seasonal patterns in the hydrology of the North Fork are dominated by the accumulation and melting of seasonal snowpack in the basin. Low-flow conditions occurred during the late-summer, fall, and winter months, and high-flow conditions coincided with the spring snowmelt. Substantial gains in streamflow occurred along the study reach of the North Fork, 85 percent of which were accounted for by tributary inflows during low-flow conditions, indicating unmeasured streamflow inputs along the main stem were 15 percent or less.

Montana↗

USGS2012

Linking urbanization to the Biological Condition Gradient (BCG) for stream ecosystems in the Northeastern United States using a Bayesian network approach

Urban development alters important physical, chemical, and biological processes that define urban stream ecosystems. An approach was developed for quantifying the effects of these processes on aquatic biota, and then linking those effects to endpoints that can be used for environmental management. These complex, interacting systems are challenging to model from a scientific standpoint. A desirable model clearly shows the system, simulates the interactions, and ultimately predicts results of management actions. Traditional regression techniques that calculate empirical relations between pairs of environmental factors do not capture the interconnected web of multiple stressors, but urban development effects are not yet understood at the detailed scales required to make mechanistic modeling approaches feasible. Therefore, in contrast to a fully deterministic or fully statistical modeling approach, a Bayesian network model provides a hybrid approach that can be used to represent known general associations between variables while acknowledging uncertainty in predicted outcomes. It does so by quantifying an expert-elicited network of probabilistic relations between variables. Advantages of this modeling approach include (1) flexibility in accommodating many model specifications and information types; (2) efficiency in storing and manipulating complex information, and to parameterize; and (3) transparency in describing the relations using nodes and arrows and in describing uncertainties with discrete probability distributions for each variable. In realization of the aforementioned advantages, a Bayesian network model was constructed to characterize the effect of urban development on aquatic macroinvertebrate stream communities through three simultaneous, interacting ecological pathways affecting stream hydrology, habitat, and water quality across watersheds in the Northeastern United States. This model incorporates both empirical data and expert knowledge to calculate the probabilities of attaining desired aquatic ecosystem conditions under different urban stress levels, environmental conditions, and management options. Ecosystem conditions are characterized in terms of standardized Biological Condition Gradient (BCG) management endpoints. This approach to evaluating urban development-induced perturbations in watersheds integrates statistical and mechanistic perspectives, different information sources, and several ecological processes into a comprehensive description of the system that can be used to support decision making. The completed model can be used to infer which management actions would lead to the highest likelihood of desired BCG tier achievement. For example, if best management practices (BMP) were implemented in a highly urbanized watershed to reduce flashiness to medium levels and specific conductance to low levels, the stream would have a 70-percent chance of achieving BCG Tier 3 or better, relative to a 24-percent achievement likelihood for unmanaged high urban land cover. Results are reported probabilistically to account for modeling uncertainty that is inherent in sources such as natural variability and model simplification error.

Scientific Investigations Report↗

USGS2013

Characterization of water quality and biological communities, Fish Creek, Teton County, Wyoming, 2007-2011

Fish Creek, an approximately 25-kilometer-long tributary to Snake River, is located in Teton County in western Wyoming near the town of Wilson. Fish Creek is an important water body because it is used for irrigation, fishing, and recreation and adds scenic value to the Jackson Hole properties it runs through. Public concern about nuisance growths of aquatic plants in Fish Creek has been increasing since the early 2000s. To address these concerns, the U.S. Geological Survey conducted a study in cooperation with the Teton Conservation District to characterize the hydrology, water quality, and biologic communities of Fish Creek during 2007–11. The hydrology of Fish Creek is strongly affected by groundwater contributions from the area known as the Snake River west bank, which lies east of Fish Creek and west of Snake River. Because of this continuous groundwater discharge to the creek, land-use activities in the west bank area can affect the groundwater quality. Evaluation of nitrate isotopes and dissolved-nitrate concentrations in groundwater during the study indicated that nitrate was entering Fish Creek from groundwater, and that the source of nitrate was commonly a septic/sewage effluent or manure source, or multiple sources, potentially including artificial nitrogen fertilizers, natural soil organic matter, and mixtures of sources. Concentrations of dissolved nitrate and orthophosphate, which are key nutrients for growth of aquatic plants, generally were low in Fish Creek and occasionally were less than reporting levels (not detected). One potential reason for the low nutrient concentrations is that nutrients were being consumed by aquatic plant life that increases during the summer growing season, as a result of the seasonal increase in temperature and larger number of daylight hours. Several aspects of Fish Creek’s hydrology contribute to higher productivity and biovolume of aquatic plants in Fish Creek than typically observed in streams of its size in Wyoming. Especially in the winter, the proportionately large, continuous gain of groundwater into Fish Creek in the perennial section keeps most of the creek free of ice. Because sunlight can still reach the streambed in Fish Creek and the water is still flowing, aquatic plants continue to photosynthesize in the winter, albeit at a lower level of productivity. Additionally, the cobble and large gravel substrate in Fish Creek provides excellent attachment points for aquatic plants, and when combined with Fish Creek’s channel stability allows rapid growth of aquatic plants once conditions allow during the spring. The aquatic plant community of Fish Creek was different than most streams in Wyoming in that it contains many different macrophytes—including macroalgae such as long streamers of Cladophora , aquatic vascular plants, and moss; most other streams in the state contain predominantly algae. From the banks of Fish Creek, the bottom of the stream sometimes appeared to be a solid green carpet. A shift was observed from higher amounts of microalgae in April/May to higher amounts macrophytes in August and October, and differences in the relative abundance of microalgae and macrophytes were statistically significant between seasons. Differences in dissolved-nitrate concentrations and in the nitrogen-to-phosphorus ratio were significantly different between seasons, as concentrations of dissolved nitrate decreased from April/May to August and October. It is likely that dissolved-nitrate concentrations in Fish Creek were lower in August and October because macrophytes were quickly utilizing the nutrient, and a negative correlation between macro-phytes and nitrate was found. Macroinvertebrates also were sampled because of their role as indicators of water quality and their documented responses to perturbation such as degradation of water quality and habitat. Statistically significant seasonal differences were noted in the macroinvertebrate community. Taxa richness and relative abundance of Ephemeroptera, Plecoptera, and Trichoptera, which tend to be intolerant of water-quality degradation, decreased from April/May to August; the same time period saw a corresponding increase in Diptera and noninsects, particularly Oligochaeta (worms) that are more tolerant. Seasonal changes in macroinvertebrate functional feeding groups were significantly different. The relative abundance of gatherer-collector and scraper feeding groups decreased from April/May to August, accompanied by an increase in filterer-collector and shredders feeding groups. Seasonal changes in feeding groups might be due to the seasonal shift in aquatic plant communities, as indicated by comparison with other streams in the area that had fewer aquatic macrophytes than Fish Creek. Statistical tests of macroinvertebrate metrics indicated few differences between years or biological sampling sites on Fish Creek, although the site farthest upstream sometimes was different not only in terms of macroinvertebrates but also in streamflow, water quality, and aquatic plants. Potential effects of contributions of additional nutrients to the Fish Creek ecosystem beyond the conditions sampled during the study period are not known. However, because virtually all of the detectable dissolved nitrate commonly was consumed by aquatic plants in August (leaving dissolved nitrate less than the reporting level in water samples), it is possible that increased nutrient contributions could cause increased growth of aquatic plants. Additional long-term monitoring of the stream, with concurrent data analysis and interpretation would be needed to determine the effects of additional nutrients on the aquatic plant community and on higher levels of the food chain.

Wyoming↗

USGS2014

Water-quality and biological conditions in selected tributaries of the Lower Boise River, southwestern Idaho, water years 2009-12

Water-quality conditions were studied in selected tributaries of the lower Boise River during water years 2009–12, including Fivemile and Tenmile Creeks in 2009, Indian Creek in 2010, and Mason Creek in 2011 and 2012. Biological samples, including periphyton biomass and chlorophyll-a, benthic macroinvertebrates, and fish were collected in Mason Creek in October 2011. Synoptic water-quality sampling events were timed to coincide with the beginning and middle of the irrigation season as well as the non-irrigation season, and showed that land uses and irrigation practices affect water quality in the selected tributaries. Large increases in nutrient and sediment concentrations and loads occurred over relatively short stream reaches and affected nutrient and sediment concentrations downstream of those reaches. Escherichia coli (E. coli) values increased in study reaches adjacent to pastured lands or wastewater treatment plants, but increased E. coli values at upstream locations did not necessarily affect E. coli values at downstream locations. A spatial loading analysis identified source areas for nutrients, sediment, and E. coli , and might be useful in selecting locations for water-quality improvement projects. Effluent from wastewater treatment plants increased nutrient loads in specific reaches in Fivemile and Indian Creeks. Increased suspended-sediment loads were associated with increased discharge from irrigation returns in each of the studied tributaries. Samples collected during or shortly after storms showed that surface runoff, particularly during the winter, may be an important source of nutrients in tributary watersheds with substantial agricultural land use. Concentrations of total phosphorus, suspended sediment, and E. coli exceeded regulatory water-quality targets or trigger levels at one or more monitoring sites in each tributary studied, and exceedences occurred during irrigation season more often than during non-irrigation season. As with water-quality sampling results, bottom-sediment samples analyzed for contaminants of emerging concern indicated that adjacent land uses can affect in-stream conditions. Contaminants of emerging concern were detected in four categories: urban compounds, industrial compounds, fecal steroids, and personal care products. Compounds in one or more of the four contaminant categories were detected at higher concentrations in upstream sites than in downstream sites in the tributaries and in the lower Boise River. High concentrations of compounds in upstream locations indicated that adjacent land use might be an important factor in contributing contaminants of emerging concern to the lower Boise River watershed. Expanded monitoring at Mason Creek near the mouth included a streamgage, a continuous water-quality monitor, and monthly water-quality sample collection. Data collected during expanded monitoring efforts at Mason Creek near the mouth provided information to develop and compare water-quality models. Regression models were developed using turbidity, discharge, and seasonality as surrogates to estimate concentrations of water-quality constituents. Daily streamflow also was used in a load model to estimate daily loads of water-quality constituents. Surrogate regression models may be useful for long-term monitoring and generally performed better than other models to estimate concentrations and loads of total phosphorus, total nitrogen, and suspended sediment in Mason Creek. Biological sampling results from Mason Creek showed low periphyton biomass and chlorophyll-a concentrations compared to those historically measured in the Boise River near Parma, Idaho, during October and November. The most abundant invertebrate found in Mason Creek was the highly tolerant and invasive New Zealand mudsnail ( Potamopyrgus antipodarum ). The presence of small rainbow trout (90 millimeters) may indicate salmonid spawning in Mason Creek. The rangeland-fish-index score of 58 for Mason Creek is comparable to rangeland-fish-index scores calculated for the Boise River near Middleton, indicating intermediate biotic condition.

Idaho↗

USGS2022

Hydrology, water quality, and biological characteristics of Levittown Lake, Toa Baja, Puerto Rico, April 2010–June 2011

Levittown Lake is a 30-hectare, brackish waterbody located in the municipality of Toa Baja, on the northern coast of Puerto Rico. The lake is a small, man-made feature formed by draining the marshland over which the Levittown community was built. Levittown Lake has an average depth of about 5 meters and a water level at/near mean sea level. Tidal oscillations within the lake were minimal during the study, about 10 centimeters regardless of ocean tides, and the daily flushing rate of the lake was about 2 percent of its entire water volume. Hydrologic, water-quality, and biological data were collected in Levittown Lake and adjacent areas (specifically, the inlet/outlet channel and Caño El Hato drainage canal) between April 2010 and June 2011 (1) to establish baseline conditions and determine the water quality of the lake on the basis of preestablished standards and (2) for contrast with other, more healthy coastal lagoons. The study provides a baseline for an assessment of the potential of Levittown Lake to function as a coastal lagoon. Water-quality properties measured onsite (temperature, pH, dissolved oxygen concentration, specific conductance, salinity, and water transparency) varied diurnally and seasonally. In general, water-quality properties were in compliance with current regulatory Class SB standards established by the Puerto Rico Environmental Quality Board, except for some dissolved oxygen concentration and pH measurements. Some dissolved oxygen concentration measurements at the water surface and all dissolved oxygen concentration measurements at the lake bottom were lower than the values recommended by the Puerto Rico Environmental Quality Board. The pH of the water at the lake surface ranged from 7.3 to 9.1, with the upper value exceeding the recommended pH values. Nutrient concentrations were below the current regulatory standards of less than 5 milligrams per liter (mg/L) for total nitrogen and 1 mg/L for total phosphorus. The measured concentrations of chlorophyll a varied throughout the year of sampling and indicate that eutrophic conditions predominate in Levittown Lake. The phytoplankton yielded an average net productivity of 0.5 milligram of oxygen per liter per hour, as determined by light and dark bottle primary productivity studies conducted on a monthly basis and measured in the early morning hours. Because these measurements were restricted to the morning hours, a qualification of the representativeness of the results to the full diurnal cycle is necessary. The measured hourly respiration rate averaged 0.39 milligram of oxygen per liter. Diel studies were planned in the lake to assess dissolved oxygen concentration diurnal curves and ultimately to compute the community net primary productivity, respiration, and gross productivity. Conditions during the diel studies were later determined to be unsuitable, limiting the assessment of community metabolism. Another biological indicator evaluated during the study was the phytoplankton biomass, and results indicated that phytoplankton biomass measured at the Levittown Lake ranged from 6.0 to 112.5 mg/L. Fecal indicator bacteria concentrations ranged from 10 to 1,540,000 colonies per 100 milliliters of water. Concentrations generally were greatest in and near the Caño El Hato drainage canal and, during the study, exceeded current regulatory standards established for Puerto Rico.

Puerto Rico↗

USGS2023

Bathymetric, hydrodynamic, biological, and water-quality characteristics of a nearshore area of the Laguna Madre near South Padre Island, Texas, 2021–22

A variety of data were collected by the U.S. Geological Survey, in cooperation with the City of South Padre Island, to better understand the physical and biological habitat in Tompkins Channel and adjacent seagrass beds in the lower Laguna Madre, Texas, where the construction of berms has been proposed in the City of South Padre Island’s Shoreline Master Plan. These berms would be used to create living shorelines, defined as shorelines that “connect the land and water to stabilize the shoreline, reduce erosion, and provide ecosystem services, like [maintaining] valuable habitat, that enhances coastal resilience.” Bathymetric surveys show variability in the lagoon depth within the study area and clearly delineate the relatively shallow bay from the deeper Tompkins Channel. There were seasonal patterns in daily mean tidal water-surface elevations, with higher mean tides in the fall and spring and lower mean tides in the winter and summer. Seasonal differences in mean tidal water-surface elevations were primarily caused by astronomical forces. Shorter-term (daily and weekly) variations in tidal water-surface elevations were produced by meteorological forcing resulting from high- and low-pressure systems, the passage of fronts, local storms, and tropical storms. The tide driven currents typically were toward the north-northwest during flood tide or toward the south-southeast during ebb tide, roughly parallel to the general South Padre Island shoreline orientation. Prevailing water current velocity (current speed and direction) indicates that there usually is a net inflow into the lower Laguna Madre from the Gulf of Mexico and a net outflow at locations north of the study area. The overall seagrass density was generally lowest in the northeast section of the transect. Areas of low seagrass density were also most commonly observed close to the channel edge of the transect. Overall, Syringodium filiforme was considerably more abundant than Thalassia testudinum and Halodule wrightii . Amphipods from the families Ampithoidae and Melitidae were the most abundant benthic invertebrates, followed by gastropods in the family Calyptraeidae. Higher abundances of benthic invertebrates were recorded at sites farther away from Tompkins Channel than at sites closer to it, perhaps because of the sensitivity of these organisms to disturbances caused by erosional forces in the channel. Changes in water-quality measured during a 2-day survey were consistent with patterns observed in prior studies, indicating biological processes likely play an important role in the physicochemical environment of the study area. Collectively, the data provide baseline information that can be used as reference conditions prior to any shoreline enhancement activities in the lower Laguna Madre.

Texas↗

USGS1977

Methods for collection and analysis of aquatic biological and microbiological samples

Chapter A4 contains methods used by the U.S. Geological Survey to collect, preserve, and analyze waters to determine their biological and microbiological properties. Part 1 discusses biological sampling and sampling statistics. The statistical procedures are accompanied by examples. Part 2 consists of detailed descriptions of more than 45 individual methods, including those for bacteria, phytoplankton, zooplankton, seston, periphyton, macrophytes, benthic invertebrates, fish and other vertebrates, cellular contents, productivity, and bioassays. Each method is summarized, and the application, interferences, apparatus, reagents, collection, analysis, calculations, reporting of results, precision and references are given. Part 3 consists of a glossary. Part 4 is a list of taxonomic references.

Techniques of Water-Resources Investigations↗

USGS1975

Chemical and biological quality of water in part of the Everglades, southeastern Florida

A comprehensive monitoring network was established in a part of the Everglades to evaluate the quality of water being delivered to Everglades National Park. Physical, chemical, and biological parameters were determined in surface water, bottom sediment, and bulk precipitation (rainfall and dry fallout). The geology of the area, bottom sediment, bulk precipitation, natural, urban, and agricultural runoff, and the characteristics of the hydrologic system in the Everglades influence the type and concentration of each chemical constituent and how it affects the water quality. The quality of surface water in the agricultural area between Lake Okeechobee and the water conservation areas is markedly different from that of other surface water in southeastern Florida. In general, the water in this area is higher in concentrations of most chemical constituents. Man has engaged in cultural activities, both agricultural and urban, which have affected the water quality in the northern and eastern segments of the area of investigation. The quality of the water improves, however, as it flows to the south and east because there is minimal input from man's activities and many of the constituents are assimilated by plants, sorbed on organic material and clay in the bottom sediments, and entrapped within the sediments. Dilution by rainfall and concentration by evapotranspiration are also important factors that influence the quality of surface water in the area of investigation. The area of investigation in the Everglades is a sink for macronutrients, trace metals, and chlorinated-hydrocarbon insecticides. These constituents do not move through the system freely. They become tied up in various complexes and for that reason, the water being delivered to Everglades National Park is of better quality than the water entering the northern edge of the water conservation areas. The various physical and biological processes and chemical reactions combine to improve the water quality as the water flows southward. The data presented in this report may be used as a baseline for determination of future changes in water quality at the several places in the Everglades where recurrent sampling of rainfall, surface water, and bottom sediments was undertaken during the course of the investigation.

Florida↗

USGS1978

The biology of Salt Wells Creek and its tributaries, southwestern Wyoming

A description of aquatic organisms and biological communities is presented for Salt Wells Creek, a plains stream in the Green River basin. The description includes seasonal population fluctuations of benthic organisms and algae, the food pyramid, and nutrient relations between various types of plants and animals. The algae and stream invertebrates were studied to determine baseline data and biological indicators of water quality. (Woodard-USGS).

Water-Resources Investigations Report↗