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USGS2025

Climate change refugia hotspots for priority species: A case study in East Africa

Natural resource managers and policymakers need actionable climate data to guide conservation decisions. Conserving climate change refugia, areas relatively buffered from contemporary climate change, is increasingly considered an effective strategy for adaptation. Despite tropical species facing heightened vulnerability to climate change, the tropics remain underserved in climate adaptation research. We coproduced with Tanzanian partners the first comprehensive assessment of climate change refugia across Tanzania through extensive consultation, in-person conversations, and field visits to priority ecosystems, ensuring our analysis addressed local conservation needs and decision-making contexts. We developed species distribution models for 33 terrestrial animal species using maximum entropy and boosted regression tree algorithms. We projected future suitable habitats for SSP126 and SSP585, for 2011–2040 and 2071–2100, using GFDL Earth System and the UK Earth System models. More than half under SSP126 and 79% of focal species under SSP585 lost their suitable habitat by 2100. Serengeti National Park, Northern Highlands Forest Reserve, and the Eastern Arc Mountains emerged as key climate change refugia, while other protected areas, including Kigosi and Ugalla River National Parks, had no climate change refugia. This assessment provides actionable insights for Tanzania's conservation prioritization while identifying critical research gaps in western and montane ecosystems.

Conservation Science and Practice↗

USGS2004

Changing perspectives on pearly mussels, North America's most imperiled animals

Pearly mussels (Unionacea) are widespread, abundant, and important in freshwater ecosystems around the world. Catastrophic declines in pearly mussel populations in North America and other parts of the world have led to a flurry of research on mussel biology, ecology, and conservation. Recent research on mussel feeding, life history, spatial patterning, and declines has augmented, modified, or overturned long-held ideas about the ecology of these animals. Pearly mussel research has begun to benefit from and contribute to current ideas about suspension feeding, life-history theory, metapopulations, flow refuges, spatial patterning and its effects, and management of endangered species. At the same time, significant gaps in understanding and apparent paradoxes in pearly mussel ecology have been exposed. To conserve remaining mussel populations, scientists and managers must simultaneously and aggressively pursue both rigorous research and conservation actions.

BioScience↗

USGS2017

Using a gradient in food quality to infer drivers of fatty acid content in two filter-feeding aquatic consumers

Inferences about ecological structure and function are often made using elemental or macromolecular tracers of food web structure. For example, inferences about food chain length are often made using stable isotope ratios of top predators and consumer food sources are often inferred from both stable isotopes and fatty acid (FA) content in consumer tissues. The use of FAs as tracers implies some degree of macromolecular conservation across trophic interactions, but many FAs are subject to physiological alteration and animals may produce those FAs from precursors in response to food deficiencies. We measured 41 individual FAs and several aggregate FA metrics in two filter-feeding taxa to (1) assess ecological variation in food availability and (2) identify potential drivers of among-site variation in FA content. These taxa were filter feeding caddisflies (Family Hydropyschidae) and dreissenid mussels (Genus Dreissena ), which both consume seston. Stable isotopic composition (C and N) in these taxa co-varied across 13 sites in the Great Lakes region of North America, indicating they fed on very similar food resources. However, co-variation in FA content was very limited, with only one common FA co-varying across this gradient (α-linolenic acid; ALA), suggesting these taxa accumulate FAs very differently even when exposed to the same foods. Based on these results, among-site variation in ALA content in both consumers does appear to be driven by food resources, along with several other FAs in dreissenid mussels. We conclude that single-taxa measurements of FA content cannot be used to infer FA availability in food resources.

Lake Erie, Lake Huron, Lake Michigan, Lake Ontario↗

USGS2010

An introduction to the practical and ethical perspectives on the need to advance and standardize the intracoelomic surgical implantation of electronic tags in fish

The intracoelomic surgical implantation of electronic tags (including radio and acoustic telemetry transmitters, passive integrated transponders and archival biologgers) is frequently used for conducting studies on fish. Electronic tagging studies provide information on the spatial ecology, behavior and survival of fish in marine and freshwater systems. However, any surgical procedure, particularly one where a laparotomy is performed and the coelomic cavity is opened, has the potential to alter the survival, behavior or condition of the animal which can impair welfare and introduce bias. Given that management, regulatory and conservation decisions are based on the assumption that fish implanted with electronic tags have similar fates and behavior relative to untagged conspecifics, it is critical to ensure that best surgical practices are being used. Also, the current lack of standardized surgical procedures and reporting of specific methodological details precludes cross-study and cross-year analyses which would further progress the field of fisheries science. This compilation of papers seeks to identify the best practices for the entire intracoelomic tagging procedure including pre- and post-operative care, anesthesia, wound closure, and use of antibiotics. Although there is a particular focus on salmonid smolts given the large body of literature available on that group, other life-stages and species of fish are discussed where there is sufficient knowledge. Additional papers explore the role of the veterinarian in fish surgeries, the need for minimal standards in the training of fish surgeons, providing a call for more complete and transparent procedures, and identifying trends in procedures and research needs. Collectively, this body of knowledge should help to improve data quality (including comparability and repeatability), enhance management and conservation strategies, and maintain the welfare status of tagged fish.

Reviews in Fish Biology and Fisheries↗

USGS2016

Priodontes maximus (Cingulata: Chlamyphoridae)

Priodontes maximus ( Kerr, 1792 ), called the giant armadillo, is monotypic and by far the largest extant armadillo. Average adult weight is about 30kg (in captivity, as high as 80kg). Its carapace extends about halfway down its sides, making it impossible to curl up tightly. It is dark brown to black dorsally, with a broad light band around the lower part of its carapace. It primarily digs to escape, enhanced by its 20-cm, sickle-shaped nail on its 3rd forefingers. P. maximus is widely distributed in South America but nowhere abundant. It is affected by habitat loss and fragmentation, agriculture, hunting, collection for museum specimens, and illegal animal trafficking. P. maximus is listed as “Vulnerable” by the International Union for Conservation of Nature and Natural Resources.

Mammalian Species↗

USGS1996

Mapping the neutralizing epitopes on the glycoprotein of infectious haematopoietic necrosis virus, a fish rhabdovirus

Twelve neutralizing monoclonal antibodies (MAbs) against the fish rhabdovirus, infectious haematopoietic necrosis virus (IHNV), were used to select 20 MAb escape mutants. The nucleotide sequence of the entire glycoprotein (G) gene was determined for six mutants representing differing cross-neutralization patterns and each had a single nucleotide change leading to a single amino acid substitution within one of three regions of the protein. These data were used to design nested PCR primers to amplify portions of the G gene of the 14 remaining mutants. When the PCR products from these mutants were sequenced, they also had single nucleotide substitutions coding for amino acid substitutions at the same, or nearby, locations. Of the 20 mutants for which all or part of the glycoprotein gene was sequenced, two MAbs selected mutants with substitutions at amino acids 230-231 (antigenic site I) and the remaining MAbs selected mutants with substitutions at amino acids 272-276 (antigenic site II). Two MAbs that selected mutants mapping to amino acids 272-276, selected other mutants that mapped to amino acids 78-81, raising the possibility that this portion of the N terminus of the protein was part of a discontinuous epitope defining antigenic site II. CLUSTAL alignment of the glycoproteins of rabies virus, vesicular stomatitis virus and IHNV revealed similarities in the location of the neutralizing epitopes and a high degree of conservation among cysteine residues, indicating that the glycoproteins of three different genera of animal rhabdoviruses may share a similar three-dimensional structure in spite of extensive sequence divergence.

Journal of General Virology↗

USGS2021

Eagle fatalities are reduced by automated curtailment of wind turbines

Collision‐caused fatalities of animals at wind power facilities create a ‘green versus green’ conflict between wildlife conservation and renewable energy. These fatalities can be mitigated via informed curtailment whereby turbines are slowed or stopped when wildlife are considered at increased risk of collision. Automated monitoring systems could improve efficacy of informed curtailment, yet such technology is undertested. We test the efficacy of an automated curtailment system—a camera system that detects flying objects, classifies them and decides whether to curtail individual turbines to avoid potential collision—in reducing counts of fatalities of eagles, at Top of the World Windpower Facility (hereafter, the treatment site) in Wyoming, USA. We perform a before–after–control–impact study, comparing the number of eagle fatalities observed at the treatment site with those at a nearby (15 km) control site without automated curtailment, both before and after the implementation of automated curtailment at the treatment site. After correcting for carcass detection probability and scaling fatality estimates to turbine‐years, we estimate that the number of fatalities at the treatment site declined by 63% (95% CI = 59%–66%) between before and after periods while increasing at the control site by 113% (51%–218%). In total, there was an 82% (75%–89%) reduction in the fatality rate at the treatment site relative to the control site. Synthesis and applications . Automated curtailment of wind turbine operation substantially reduced eagle fatalities. This technology therefore has the potential to lessen the conflict between wind energy and raptor conservation. Although automated curtailment reduced fatalities, they were not fully eliminated. Therefore, automated curtailment, as implemented here, is not a panacea and its efficacy could be improved if considered in conjunction with other mitigation actions.

Wyoming↗

USGS2016

Extremes of heat, drought and precipitation depress reproductive performance in shortgrass prairie passerines

Climate change elevates conservation concerns worldwide because it is likely to exacerbate many identified threats to animal populations. In recent decades, grassland birds have declined faster than other North American bird species, a loss thought to be due to habitat loss and fragmentation and changing agricultural practices. Climate change poses additional threats of unknown magnitude to these already declining populations. We examined how seasonal and daily weather conditions over 10 years influenced nest survival of five species of insectivorous passerines native to the shortgrass prairie and evaluate our findings relative to future climate predictions for this region. Daily nest survival ( n = 870) was best predicted by a combination of daily and seasonal weather variables, age of nest, time in season and bird habitat guild. Within a season, survival rates were lower on very hot days (temperatures ≥ 35 °C), on dry days (with a lag of 1 day) and on stormy days (especially for those species nesting in shorter vegetation). Across years, survival rates were also lower during warmer and drier breeding seasons. Clutch sizes were larger when early spring temperatures were cool and the week prior to egg-laying was wetter and warming. Climate change is likely to exacerbate grassland bird population declines because projected climate conditions include rising temperatures, more prolonged drought and more intense storms as the hydrological cycle is altered. Under varying realistic scenarios, nest success estimates were halved compared to their current average value when models both increased the temperature (3 °C) and decreased precipitation (two additional dry days during a nesting period), thus underscoring a sense of urgency in identifying and addressing the current causes of range-wide declines.

Ibis↗

USGS2013

Moving across the border: Modeling migratory bat populations

The migration of animals across long distances and between multiple habitats presents a major challenge for conservation. For the migratory Mexican free-tailed bat (Tadarida brasiliensis mexicana), these challenges include identifying and protecting migratory routes and critical roosts in two countries, the United States and Mexico. Knowledge and conservation of bat migratory routes is critical in the face of increasing threats from climate change and wind turbines that might decrease migratory survival. We employ a new modeling approach for bat migration, network modeling, to simulate migratory routes between winter habitat in southern Mexico and summer breeding habitat in northern Mexico and the southwestern United States. We use the model to identify key migratory routes and the roosts of greatest conservation value to the overall population. We measure roost importance by the degree to which the overall bat population declined when the roost was removed from the model. The major migratory routes—those with the greatest number of migrants—were between winter habitat in southern Mexico and summer breeding roosts in Texas and the northern Mexican states of Sonora and Nuevo Leon. The summer breeding roosts in Texas, Sonora, and Nuevo Leon were the most important for maintaining population numbers and network structure – these are also the largest roosts. This modeling approach contributes to conservation efforts by identifying the most influential areas for bat populations, and can be used as a tool to improve our understanding of bat migration for other species. We anticipate this approach will help direct coordination of habitat protection across borders.

Ecosphere↗

USGS1997

Effects of climate change on southeastern forests

Forests of the coastal plain region of the southeastern United States are among the most productive in North America. Because they form the basis of a large timber and wood products industry, these forests are of considerable economic importance. Also, the forests are rich in plant and animal species. Because they are diverse as well as productive, they have considerable conservation importance. Therefore, understanding potential impacts of climate change on southern forests is critical.

Texas↗

USGS2020

Predicting multi-species foraging hotspots for marine turtles in the Gulf of Mexico

Quantifying the distribution of animals and identifying underlying characteristics that define suitable habitat are essential for effective conservation of free-ranging species. Prioritizing areas for conservation is important in managing a geographic extent that has a high level of disturbance and limited conservation resources. We examined the potential use of a species distribution model ensemble for multi-species conservation in marine habitats. Using satellite telemetry locations during foraging as input data, and ensemble ecological niche models, we predicted foraging areas for 2 nesting marine turtle species within the Gulf of Mexico (GoM): Kemp’s ridley Lepidochelys kempii (n = 63) and loggerhead Caretta caretta (n = 63). We considered 7 geophysical, biological, and climatic variables and compared contributing factors for each species’ foraging habitat selection. For both species, predicted suitable foraging habitats encompassed large areas along the GoM coast, but only intersected with each other in relatively small areas. Highly parameterized models resulted in overall greater fits, suggesting that multiple factors influence habitat selection by these species. Model validation results were mixed: cross-validation resulted in high prediction accuracy for both species, but an evaluation against independent data resulted in a low omission rate (5%) for Kemp’s ridleys and a high omission rate (72%) for loggerheads. The relatively small intersection of model-predicted foraging areas for these 2 species within the study area may indicate possible niche differentiations. The high omission rate for loggerheads indicates our samples likely underrepresent the population and illustrates the challenges in predicting suitable foraging extents for species that make dynamic movements and have greater individual variability.

Gulf of Mexico↗

USGS2018

A regional analysis of long-term gray and harbor seal stranding events

Strong indicators of species’ sensitivity, adaptive capacity, and overall vulnerability to climate change are provided by changes in phenology, the timing of recurring life events (Parmesan and Yohe, 2003). We possess poor information on climate induced shifts in phenology of marine organisms, especially top predators. The Gulf of Maine (GOM) Seasonal Migrants Project is an ongoing effort to determine the phenological changes occurring in the GOM across marine mammals, sea turtles, and other marine species of conservation concern. As part of that study, stranding data of injured or dead animals was explored for its utility to serve as supplemental data to amend more traditional survey data where observations are scarce. NOAA’s Greater Atlantic Region Marine Mammal Stranding Network Database was examined for its utility as a potential long-term time series for the evaluation of phenological patterns and shifts. Although records from stranding events represent sick or injured animals, these data have been found to be reasonably comparable to survey data and provide useful information on species’ distribution, abundance, and foraging ecology (Maldini et al., 2005; Staudinger et al., 2014; Johnston et al., 2012, 2015). In this study, we focused on stranding data of two marine mammal species, harbor seals (Phoca vitulina) and gray seals (Halichoerus grypus). It was anticipated these data would also be good indicators of the areas and habitats that seal populations use on a seasonal and annual basis in the region. Viable stranding data from Maine to North Carolina included 1,571 gray seals and 4,399 harbor seals from 2001 to 2015. This paper presents a summary of the spatial and temporal patterns of these data, and suggests their suitability as supplemental data to other GOM marine species phenological studies, such as the North Atlantic Right Whale Consortium database modeling efforts.

Report↗

USGS2025

Jaguar density estimation in Mexico: The conservation importance of considering home range orientation in spatial capture–recapture

Accurate estimation of population parameters for imperiled wildlife is crucial for effective conservation decision-making. Population density is commonly used for monitoring imperiled species across space and time, and spatial capture–recapture (SCR) models can produce unbiased density estimates. However, many imperiled species are restricted to fragmented remnant habitats in landscapes severely modified by humans, which can alter animal space use in ways that violate typical SCR model assumptions, possibly cryptically biasing density estimates and misinforming conservation actions. Using data from a two-year camera-trapping survey in the Central Pacific Coast region, Mexico, we demonstrate the potential importance to endangered jaguar ( Panthera onca ) conservation of considering non-circular home ranges when estimating population density with SCR. Strong evidence existed that jaguars had elliptical home ranges wherein movements primarily occurred along linearly arranged coastal habitats that the camera array aligned with. Accounting for this movement with the SCR anisotropic detection function transformation, density estimates were 30%–32% higher than estimates from standard SCR models that assumed circular home ranges. Given much of suitable jaguar habitat in Mexico is fragmented and linearly oriented along coastlines and mountain ranges, accommodating irregular space use in SCR may be critical for obtaining reliable density estimates to inform effective jaguar conservation.

Nayarit↗

USGS2021

Mapping out a future for ungulate migrations

Migration of ungulates (hooved mammals) is a fundamental ecological process that promotes abundant herds, whose effects cascade up and down terrestrial food webs. Migratory ungulates provide the prey base that maintains large carnivore and scavenger populations and underpins terrestrial biodiversity (fig. S1). When ungulates move in large aggregations, their hooves, feces, and urine create conditions that facilitate distinct biotic communities. The migrations of ungulates have sustained humans for thousands of years, forming tight cultural links among Indigenous people and local communities. Yet ungulate migrations are disappearing at an alarming rate ( 1 ). Efforts by wildlife managers and conservationists are thwarted by a singular challenge: Most ungulate migrations have never been mapped in sufficient detail to guide effective conservation. Without a strategic and collaborative effort, many of the world's great migrations will continue to be truncated, severed, or lost in the coming decades. Fortunately, a combination of animal tracking datasets, historical records, and local and Indigenous knowledge can form the basis for a global atlas of migrations, designed to support conservation action and policy at local, national, and international levels.

Science↗

USGS2023

AIMS for wildlife: Developing an automated interactive monitoring system to integrate real-time movement and environmental data for true adaptive management

To effectively manage species and habitats at multiple scales, population and land managers require rapid information on wildlife use of managed areas and responses to landscape conditions and management actions. GPS tracking studies of wildlife are particularly informative to species ecology, habitat use, and conservation. Combining GPS data with administrative data and a diverse suite of remotely sensed, geo-referenced environmental (e.g., climatic) data, would more comprehensively inform how animals interact with and utilize habitats and ecosystems and our goal was to create a conceptual model for a system that would accomplish this – the ‘Automated Interactive Monitoring System (AIMS) for Wildlife’. Our objective for this study was to develop a Customized Wildlife Report (CWR) - the first AIMS for Wildlife deliverable product. CWRs collate and summarize our 8-year GPS tracking dataset of ∼11 million locations from 1338 individual (16 species) avifauna and make actionable, real-time data on animal movements and trends in a specific area of interest available to managers and stakeholders for rapid application in day-to-day management. The CWR exemplar presented in this paper was developed to address needs identified by habitat managers of Sacramento National Wildlife Refuge and illustrates the highly specific, information offered and how it contributes to assessing the efficacy of conservation actions while allowing for near real-time adaptive management. The report can be easily customized for any of the thousands of wildlife refuges or regional areas of interest in the United States, emphasizing the broad application of an animal movement data stream. Utilizing diverse, extensive telemetry data streams through scientific collaboration can aid managers and conservation stakeholders with short and long-term research and conservation planning and help address a cadre of issues from local-scale habitat management to improving the understanding of landscape level impacts like drought, wildfire, and climate change on wildlife populations.

Journal of Environmental Management↗

USGS1998

County-based estimates of nitrogen and phosphorus content of animal manure in the United States for 1982, 1987, and 1992

This data set contains county estimates of nitrogen and phosphorus content of animal wastes produced annually for the years 1982, 1987, and 1992. The estimates are based on animal populations for those years from the 1992 Census of Agriculture (U.S. Bureau of the Census, 1995) and methods for estimating the nutrient content of manure from the Soil Conservation Service (1992). The data set includes several components.. 1. Spatial component - generalized county boundaries in ARC/INFO format/1/, including nine INFO lookup tables containing animal counts and nutrient estimates keyed to the county polygons using county code. (The county lines were not used in the nutrient computations and are provided for displaying the data as a courtesy to the user.) The data is organized by 5-digit state/county FIPS (Federal Information Processing Standards) code. Another INFO table lists the county names that correspond to the FIPS codes. 2. Tabular component - Nine tab-delimited ASCII lookup tables of animal counts and nutrient estimates organized by 5-digit state/county FIPS (Federal Information Processing Standards) code. Another table lists the county names that correspond to the FIPS codes. The use of trade names is for identification purposes only and does not constitute endorsement by the U.S. Geological Survey.

Report↗

USGS2015

Sea otters in captivity: applications and implications of husbandry development, public display, scientific research and management, and rescue and rehabilitation for sea otter conservation

Studies of sea otters in captivity began in 1932, producing important insights for conservation. Soviet (initiated in 1932) and United States (1951) studies provided information on captive otter husbandry, setting the stage for eventual large-scale translocations as tools for population restoration. Early studies also informed effective housing of animals in zoos and aquaria, with sea otters first publicly displayed in 1954. Surveys credited displayed otters in convincing the public of conservation values. After early studies, initial scientific data for captive sea otters in aquaria came from work initiated in 1956, and from dedicated research facilities beginning in 1968. Significant achievements have been made in studies of behavior, physiology, reproduction, and high-priority management issues. Larger-scale projects involving translocation and oil spill response provided extensive insights into stress reactions, water quality issues in captivity, and effects of oil spills.

Book chapter↗

USGS2010

Bringing wisents back to the Caucasus Mountains: 70 years of a grand mission

We describe the history of mountain wisent restoration in the north-west Caucasus region. We review information on wisent during the 18th and 19th centuries, contemporary regional development and reasons for wisent extirpation. We emphasize the key role of the Kuban Hunting Reserve as a main factor in preserving wisent in this region between 1888 and 1909. The article provides information on the fate of three known Caucasus wisent and their impact on the common pedigree of EuropeanWisent. The importance of scientist’s efforts to conserve the survived wisent in Europe in 1920th and international cooperation is underscored. The issues of hybridization between wisent and American bison and the possible influence of hybridization events on the and taxonomic status of contemporary mountain wisent are discussed. We describes in detail the history of wisent reintroduced to the Caucasus, the establishment of seasonal migration patterns and adaptation to the mountainous region and poaching pressures. Mountain wisent reached a maximum number of 1500 animals in 1991. We review the significant role of the Caucasian Biosphere Reserve and its zoologists in conservation of mountain wisent in its historical area and current research objectives with the support of German conservation organizations.

European Bison Conservation Newletter↗