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USGS Science Serves Public Health

Human health so often depends on the health of the environment and wildlife around us. The presence of naturally occurring or human environmental contaminants and the emergence of diseases transferred between animals and humans are growing concerns worldwide. The USGS is a source of natural science information vital for understanding the quantity and quality of our earth and living resources. This information improves our understanding not only of how human activities affect environmental and ecological health, but also of how the quality of our environment and wildlife in turn affects human health. USGS is taking a leadership role in providing the natural science information needed by health researchers, policy makers, and the public to safeguard public health

Fact Sheet

U.S. Department of the Interior Climate Science Centers and U.S. Geological Survey National Climate Change and Wildlife Science Center—Annual report for 2015

2015 was another great year for the Department of the Interior (DOI) Climate Science Centers (CSCs) and U.S. Geological Survey (USGS) National Climate Change and Wildlife Science Center (NCCWSC) network. The DOI CSCs and USGS NCCWSC continued their mission of providing the science, data, and tools that are needed for on-the-ground decision making by natural and cultural resource managers to address the effects of climate change on fish, wildlife, ecosystems, and communities. Our many accomplishments in 2015 included initiating a national effort to understand the influence of drought on wildlife and ecosystems; providing numerous opportunities for students and early career researchers to expand their networks and learn more about climate change effects; and working with tribes and indigenous communities to expand their knowledge of and preparation for the impacts of climate change on important resources and traditional ways of living. Here we illustrate some of these 2015 activities from across the CSCs and NCCWSC.

Open-File Report

Exchange of carbapenem-resistant Escherichia coli Sequence Type 38 intercontinentally and among wild bird, human, and environmental niches

Carbapenem-resistant Enterobacteriaceae (CRE) are a global threat to human health and are increasingly being isolated from nonclinical settings. OXA-48-producing Escherichia coli sequence type 38 (ST38) is the most frequently reported CRE type in wild birds and has been detected in gulls or storks in North America, Europe, Asia, and Africa. The epidemiology and evolution of CRE in wildlife and human niches, however, remains unclear. We compared wild bird origin E. coli ST38 genome sequences generated by our research group and publicly available genomic data derived from other hosts and environments to (i) understand the frequency of intercontinental dispersal of E. coli ST38 clones isolated from wild birds, (ii) more thoroughly measure the genomic relatedness of carbapenem-resistant isolates from gulls sampled in Turkey and Alaska, USA, using long-read whole-genome sequencing and assess the spatial dissemination of this clone among different hosts, and (iii) determine whether ST38 isolates from humans, environmental water, and wild birds have different core or accessory genomes (e.g., antimicrobial resistance genes, virulence genes, plasmids) which might elucidate bacterial or gene exchange among niches. Our results suggest that E. coli ST38 strains, including those resistant to carbapenems, are exchanged between humans and wild birds, rather than separately maintained populations within each niche. Furthermore, despite close genetic similarity among OXA-48-producing E. coli ST38 clones from gulls in Alaska and Turkey, intercontinental dispersal of ST38 clones among wild birds is uncommon. Interventions to mitigate the dissemination of antimicrobial resistance throughout the environment (e.g., as exemplified by the acquisition of carbapenem resistance by birds) may be warranted.

Applied and Environmental Microbiology

Cooperative Fish and Wildlife Research Units program—2020 Year in review

Established in 1935, the Cooperative Fish and Wildlife Research Units program (CRU program) is a unique cooperative partnership among State fish and wildlife agencies, universities, the Wildlife Management Institute, the U.S. Geological Survey (USGS), and the U.S. Fish and Wildlife Service. Designed to meet the scientific needs of natural resource management agencies and the necessity for trained professionals in the growing field of wildlife management, the program has grown from the original 9 wildlife-only units to a program that today includes 40 Cooperative Fish and Wildlife Research Units located on university campuses in 38 States. The partnerships that form each unit are some of the USGS’s strongest links to Federal and State land and natural resource agencies as mandated by the Cooperative Research and Training Units Act of 1960 (P.L. 86–686). This report highlights the activities and accomplishments of the program and its cooperators for calendar year 2020.

Circular

Cooperative Fish and Wildlife Research Units program — 2021 year in review

Established in 1935, the Cooperative Fish and Wildlife Research Units program is a unique cooperative partnership among State fish and wildlife agencies, universities, the Wildlife Management Institute, the U.S. Fish and Wildlife Service, and the U.S. Geological Survey. Designed to meet the scientific needs of natural resource management agencies and the necessity for trained professionals in the growing field of wildlife management, the program has grown from the original 9 wildlife-only units to a program that today includes 41 Cooperative Fish and Wildlife Research Units located on university campuses in 39 States. The partnerships that form each unit are some of the USGS’s strongest links to Federal and State land and natural resource agencies as mandated by the Cooperative Research and Training Units Act of 1960 (P.L. 86–686). This report highlights the activities and accomplishments of the program and its cooperators for 2021.

Circular

Greater sage-grouse habitat of Nevada and northeastern California—Integrating space use, habitat selection, and survival indices to guide areas for habitat management

Executive Summary Greater sage-grouse populations ( Centrocercus urophasianus ; hereafter sage-grouse) are threatened by a suite of disturbances and anthropogenic factors that have contributed to a net loss of sagebrush-dominant shrub cover in recent decades. Declines in sage-grouse populations are largely linked to habitat loss across their range. A key component of conservation and land use planning efforts for sage-grouse involves the continued monitoring and modeling of habitat requirements and suitability across its range. The Bureau of Land Management (BLM) is addressing the management of sage-grouse habitats on BLM-authorized public lands throughout the western United States through a land use planning amendment and associated environmental impact statement (86 FR 66331). More than 25 percent of the range-wide distribution of sage-grouse is within Nevada and northeastern California, and information on sage-grouse distribution and habitat requirements is important to guide appropriate management decisions. Therefore, the BLM has identified the need for updated spatially explicit information on sage-grouse habitat in Nevada and northeastern California to guide the land use planning amendment and associated management decisions. To address this need, researchers with the U.S. Geological Survey, in close cooperation with multiple State and Federal resource agency partners, including BLM, Nevada Department of Wildlife (NDOW) and California Department of Fish and Wildlife (CDFW), sought to map sage-grouse distribution and produce example habitat designations in these states. Herein, we report results of our primary study objective, which was to map sage-grouse habitat and create example habitat management areas, based on more than a decade of location and survival data collected from marked sage-grouse across the study region coupled with lek count survey data managed by the NDOW and the CDFW. We expanded on previously developed methodology to incorporate information on habitat selection and survival during reproductive life stages and specific seasons with updated sage-grouse location and known fate datasets, while also including brood-rearing areas that are understood to be threatened and important for population persistence. We combined predictive habitat map surfaces for each life stage and season with updated information on current occupancy patterns to classify habitat based on its suitability and probability of occupancy. We carried out additional steps to delineate specific example habitat management areas, specifically (1) incorporated corridors connecting key nesting and brood-rearing habitat, (2) corrected outputs for pre-wildfire habitat conditions within areas burned in the last 16 years, and (3) masked out areas of anthropogenic development. Our methodological example of deriving habitat management areas was intended to help inform decisions by BLM and other land managers regarding conservation and management of sage-grouse. Associated data products in the form of habitat maps provide updated, detailed, and comprehensive information about the status of habitats and can be useful to partner agencies in their efforts to designate and rank habitats for this species of high conservation concern in Nevada and California, with full recognition that on-the-ground field data and local sources of information and expertise should be used in conjunction with inferences from these models.

California, Idaho, Nevada

Contaminant Hazard Reviews (compilation)

This compact disc (CD) contains the 35 reports in the Contaminant Hazard Reviews (CHR) that were published originally between 1985 and 1999 in the U.S. Department of the Interior Biological Report series. The CD was produced because printed supplies of these reviews--a total of 105,000--became exhausted and demand remained high. Each review was prepared at the request of environmental specialists of the U.S. Fish and Wildlife Service and each contained specific information on the following: mirex, cadmium, carbofuran, toxaphene, selenium, chromium, polychlorinated biphenyls, dioxins, diazinon, mercury, polycyclic aromatic hydrocarbons, arsenic, chlorpyrifos, lead, tin, index issue, pentachlorophenol, atrazine, molybdenum, boron, chlordane, paraquat, cyanide, fenvalerate, diflubenzuron, zinc, famphur, acrolein, radiation, sodium monofluoroacetate, planar PCBs, silver, copper, nickel, and a cumulative index to chemicals and species. Each report reviewed and synthesized the technical literature on a single contaminant and its effects on terrestrial plants and invertebrates, aquatic plants and animals, avian and mammalian wildlife, and other natural resources. The subtopics include contaminant sources and uses; physical, chemical, and metabolic properties; concentrations in field collections of abiotic materials and living organisms; deficiency effects, where appropriate; lethal and sublethal effects, including effects on survival, growth, reproduction, metabolism, mutagenicity, teratogenicity, and carcinogenicity; proposed criteria for the protection of human health and sensitive natural resources; and recommendations for additional research.

Contaminant Hazard Reviews

Pardus in the press: Drivers of leopard (Panthera pardus fusca) attack occurrence on humans in Nepal

The negative impact of large carnivore presence in human-dominated landscapes manifests as livestock depredation and in extreme cases as attacks on humans. In the case of conflict with leopards in Nepal, attacks resulting in human fatality have become more frequent over time, thus creating an urgent socio-ecological and management issue. We estimated the occurrence of leopard attacks in Nepal from human-leopard conflict cases reported in the media. We used occupancy models to analyse data collected from online news reports on incidents of leopard attacks on humans to explore drivers of leopard attacks on a landscape scale. Our results suggest that the probability of occurrence of leopard attack is associated with human population density, terrain ruggedness and livestock density. The human population density effect may be indicative of a density-dependent relationship, where attacks are more likely in areas where an increased abundance of humans increases encounter rates with leopards. The positive effect of livestock density suggests that livestock may be drawing leopards into human settlements, and consequently increasing the likelihood of attacks on humans. Terrain ruggedness might be offering ideal conditions to facilitate attacks on humans, for example remoteness and high amounts of cover to launch ambush attacks. We provide inference and insights into key determinants of leopard attacks on humans on a landscape scale. These insights can be used to guide future research, inform mitigation measures to reduce leopard attacks and foster a better understanding of the interaction between people and leopards. This study demonstrates the applicability and novelty of using a hierarchical modelling framework applied to freely and publicly available media reports to inform the applied management of human-wildlife conflict at a national scale.

People and Nature

The role of environment and wildlife in human health

In 2007, the U.S. Geological Survey (USGS) developed a science strategy outlining the major natural science issues facing the Nation in the next decade. The science strategy consists of six science directions of critical importance, focusing on areas where natural science can make a substantial contribution to the well-being of the Nation and the world. This fact sheet focuses on the role of environment and wildlife in human health and how USGS research can strengthen the Nation with information needed to meet the challenges of the 21st century.

Fact Sheet

Susitna Hydroelectric Project: terrestrial environmental workshop and preliminary simulation model

The technical feasibility, economic viability, and environmental impacts of a hydroelectric development project in the Susitna River Basin are being studied by Acres American, Inc. on behalf of the Alaska Power Authority. As part of these studies, Acres American recently contracted LGL Alaska Research Associates, Inc. to coordinate the terrestrial environmental studies being performed by the Alaska Department of Fish and Game and, as subcontractors to LGL, several University of Alaska research groups. LGL is responsible for further quantifying the potential impacts of the project on terrestrial wildlife and vegetation, and for developing a plan to mitigate adverse impacts on the terrestrial environment. The impact assessment and mitigation plan will be included as part of a license application to the Federal Energy Regulatory Commission (FERC) scheduled for the first quarter of 1983. The quantification of impacts, mitigation planning, and design of future research is being organized using a computer simulation modelling approach. Through a series of workshops attended by researchers, resource managers, and policy-makers, a computer model is being developed and refined for use in the quantification of impacts on terrestrial wildlife and vegetation, and for evaluating different mitigation measures such as habitat enhancement and the designation of replacement lands to be managed by wildlife habitat. This report describes the preliminary model developed at the first workshop held August 23 -27, 1982 in Anchorage.

Report

Ungulate migrations of the western United States, Volume 1

Across the western United States, many ungulate herds must migrate seasonally to access resources and avoid harsh winter conditions. Because these migration paths cover vast landscapes (in other words migration distances up to 150 miles [241 kilometers]), they are increasingly threatened by roads, fencing, subdivisions, and other development. Over the last decade, many new tracking studies have been conducted on migratory herds, and analytical methods have been developed that allow for population-level corridors and stopovers to be mapped and prioritized. In 2018, the U.S. Geological Survey assembled a Corridor Mapping Team to provide technical assistance to western states working to map bison, elk, moose, mule deer, and pronghorn migrations using existing Global Positioning System data. Led by the Wyoming Cooperative Fish and Wildlife Research Unit, the team consists of federal scientists, university researchers, and biologists and analysts from participating state agencies. In its first year, the team has worked to develop standardized analytical and computational methods and a workflow applicable to datasets typically collected by state agencies. In 2019, the team completed analyses necessary to map corridors, stopovers, routes and winter ranges in Arizona, Idaho, Nevada, Utah, and Wyoming. A total of 26 corridors, 16 migration routes, 25 stopovers, and 9 winter ranges were mapped across these states and are included in this report. This report and associated data release provide the means for the habitats required for migration to be taken into account by state and federal transportation officials, land and wildlife managers, planners, and other conservationists working to maintain big-game migration in the western states.

Scientific Investigations Report

Restoring Pacific Lamprey in the Umpqua River Basin of Oregon: A workshop summary

The Umpqua River Basin in southwestern Oregon (Figure 1) is part of the lands inhabited by the Cow Creek Band of Umpqua Tribe of Indians and an area of active co-management authority. This Basin supports a unique fish fauna, including important populations of Pacific salmon ( Oncorhynchus spp.) and steelhead ( O. mykiss ), and other native fishes that are endemic to the region (Mims et al. 2018). Among these species, the Pacific Lamprey ( Entosphenus tridentatus ) is one of the most unique, representing an ancient lineage of jawless fishes that long predates the evolution of any other species of fish in the basin (Clemens et al. 2017, 2021a). The Pacific Lamprey also represents an important cultural and food resource that features prominently in the indigenous practices of the Cow Creek Band of Umpqua Tribe of Indians. This report provides a select summary of topics related to the conservation of Pacific Lamprey in the Umpqua River Basin. Many of the topics addressed herein were discussed in a workshop co-hosted by the Cow Creek Band of Umpqua Tribe of Indians and the U.S. Geological Survey in April of 2022. This workshop was focused on threats to Pacific Lamprey in fresh waters of the basin. The workshop highlighted science conducted over the past 15 years by local managers and researchers to understand and address these threats and provide new information relevant to the conservation and restoration of Pacific Lamprey. Attendees included staff from the Coquille Indian Tribe, Yakama Nation, Columbia River Inter-Tribal Fish Commission, Partnership for Umpqua Rivers, Rogue River Watershed Council, Curry Watersheds Council, PacifiCorp, Trout Unlimited, Jackson Soil and Water Conservation District, Oregon Department of Fish and Wildlife, Bureau of Land Management, U.S. Fish and Wildlife Service, and U.S. Forest Service. This report provides an overview of this workshop and recent science and provides an overview of potential future efforts that could inform restoration of Pacific Lamprey. This summary is organized into four sections that relate to the main topics of the workshop: 1) The physical habitat template (stream flow, instream wood, sediment, and water temperature), 2) movement barriers and reservoirs, 3) biological invasions, and 4) climate adaptation. These do not represent an exhaustive list of topics related to conservation of Pacific Lamprey in the Umpqua Basin.

Oregon

Catalogue of polar bear (Ursus maritimus) maternal den locations in the Beaufort and Chukchi Seas and nearby areas, 1910–2018

This report presents data on the approximate locations and methods of discovery of 530 polar bear ( Ursus maritimus ) maternal dens observed in the Beaufort and Chukchi Seas and neighboring areas from 1910 to 2018, and archived partly by the U.S. Geological Survey, Alaska Science Center, and partly by the U.S. Fish and Wildlife Service, Marine Mammals Management, in Anchorage, Alaska. A description of data collection methods and their associated biases, primary data collection time periods, and estimated position uncertainty are provided. Polar bears in the Beaufort and Chukchi Seas den on sea ice and land. Standardized very high frequency (VHF) aircraft surveys and satellite radio telemetry data provide a general understanding of where polar bears have denned in this region over the past 3 decades. Den observations made during other research activities and anecdotal reports from other government agencies, coastal residents, and industry personnel also are reported. These data on past polar bear maternal den locations are provided to inform decision making by natural resource agencies and for public use.

Alaska

Effects of weather on breeding ducks in North Dakota

The present report quantifies relations between weather and several aspects of the breeding biology of four duck species: mallard (Anas platyrhynchos), gadwall (A. strepera), blue-winged teal (A. discors), and redhead (Aythya americana). Data were obtained from two locations in North Dakota,--the J. Clark Salyer National Wildlife Refuge, intermittently during 1936-68, and the Northern Prairie Wildlife Research Center's Woodworth Station during 1965-77. Arrival dates varied with mean temperature before and during the usual arrival period; early-arriving species were affected by early-season temperatures, and later-arriving species by temperatures later in spring. After temperature effects were accounted for, first arrivals were seen at the more southern Woodworth Station a few days earlier than at Salyer. High spring temperatures also seemed to induce early nesting. The mallard, which nested earliest, was most affected by temperatures during April whereas the other species were most affected by temperatures during late April and May. Peak hatching dates were also earlier in years with higher temperatures in May. Earlier peaks were associated with early first nests, so it was difficult to separate the effects of weather and date of initial nesting. Peaks at Woodworth occurred earlier than at Salyer, after temperature differences were taken into account. The period of most active nesting was longest for the early-nesting mallard, shortest for the late-nesting gadwall, and intermediate for the blue-winged teal and redhead. For two species, precipitation during the breeding season may have prolonged nesting activities. We also found that late nesting seasons tend to be compressed. Productivity at Salyer, measured by the brood to pair ratio, was generally greater in years with higher temperatures during 23 April-3 June. Effects were more pronounced among early-nesting species. Average brood size for Classes I and II tended to decline during the 1947-62 period at Salyer; pair populations generally increased. Consequently, it was nearly impossible to distinguish the effects of pair density on brood size from those of yearly trend. In addition, Class II broods were smaller in years when temperatures were higher during late May and June.

Fish and Wildlife Technical Report

Legacy data for a northern prairie grassland: Woodworth Study Area, North Dakota, 1963-89

Ecological data commonly become more valuable through time. Such legacy data provide baseline records of past biological, physical, and social information that provide historical perspective and are necessary for assessment of stasis or change. Legacy data collected at the Woodworth Study Area (WSA), a contiguous block of grasslands, croplands, and wetlands covering more than 1,000 hectares of the Prairie Pothole Region of North Dakota, are cataloged and summarized in this study. The WSA is one of the longest researched grassland sites in the Upper Midwest. It has an extensive history of settlement, land use, and management that provides a deeper context for future research. The WSA data include long-term vegetation transect records, land use history, habitat management records, geologic information, wetland hydrology and chemistry information, and spatial images. Substantial parts of these data have not been previously reported. The WSA is representative of many other lands purchased by the U.S. Fish and Wildlife Service in the Prairie Pothole Region from the 1930s to the 1970s; therefore, synthesized data from the WSA are broadly applicable to topics of concern in northern grasslands, such as increases in non-native plants, managing for biodiversity, and long-term effects of habitat management. New techniques are also described that were used to preserve these data for future analyses. The data preservation techniques are applicable to any project with data that should be preserved for 100 years or more.

North Dakota

Guidelines for proper care and use of wildlife in field research

Public attitudes towards animals continue to change over time. These changes apply to wildlife along with other species, and in recent years, attitudes have been increasingly oriented toward assuring that all species receive proper care whenever human interactions are involved. Guidance regarding the application of euthanasia is provided in the previous chapter. This chapter provides basic guidelines for the proper use of wildlife in field investigations. We believe this previously published information from The Wildlife Society is sufficiently important to include in this field manual. The Wildlife Society has been kind enough to grant permission for this reproduction. The scope of this chapter extends to all wildlife, and the application of this material extends beyond research to all wildlife investigations. This chapter is reproduced, with the addition of illustrations and minor modifications, as it appeared in Research and Management Techniques for Wildlife and Habitats (Bookhout, 1994), and, thus, it deviates from the format for the rest of Volume I.

Information and Technology Report

Effects of oil on aquatic birds

There is some evidence of the impact of direct mortality from oil spills on bird populations, but very little is known about the sublethal and indirect effects of oil on birds. Research at the Patuxent Wildlife Research Center, Laurel, Maryland, is directed at (1) determining the effects of petroleum on the physiology and reproductive success of birds, and (2) developing the analytical methodology necessary for detection of petroleum in avian tissues.

FWS/OBS

Observations of elk movement patterns on Fossil Butte National Monument

The elk herd that frequents Fossil Butte National Monument, a subset of the West Green River elk population, provides visitors with seasonal opportunities to view an iconic species of the western United States. Throughout the year, these elk range across a variety of private, State, and Federal lands within close proximity to the Monument. These lands are managed differently for various uses which can create challenging wildlife-management issues and influence the herd’s seasonal movements and distribution. Research lead by the USGS investigates some of the factors associated with these seasonal changes.

Wyoming