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At least 271 records · Page 15Linked to original sources
USGS1990

Conducting field studies for testing pesticide leaching models

A variety of predictive models are being applied to evaluate the transport and transformation of pesticides in the environment. These include well known models such as the Pesticide Root Zone Model (PRZM), the Risk of Unsaturated-Saturated Transport and Transformation Interactions for Chemical Concentrations Model (RUSTIC) and the Groundwater Loading Effects of Agricultural Management Systems Model (GLEAMS). The potentially large impacts of using these models as tools for developing pesticide management strategies and regulatory decisions necessitates development of sound model validation protocols. This paper offers guidance on many of the theoretical and practical problems encountered in the design and implementation of field-scale model validation studies. Recommendations are provided for site selection and characterization, test compound selection, data needs, measurement techniques, statistical design considerations and sampling techniques. A strategy is provided for quantitatively testing models using field measurements.

International Journal of Environmental Analytical ↗
USGS2019

Modeling connectivity of non‐floodplain wetlands: Insights, approaches, and recommendations

Representing hydrologic connectivity of non‐floodplain wetlands (NFWs) to downstream waters in process‐based models is an emerging challenge relevant to many research, regulatory, and management activities. We review four case studies that utilize process‐based models developed to simulate NFW hydrology. Models range from a simple, lumped parameter model to a highly complex, fully distributed model. Across case studies, we highlight appropriate application of each model, emphasizing spatial scale, computational demands, process representation, and model limitations. We end with a synthesis of recommended “best modeling practices” to guide model application. These recommendations include: (1) clearly articulate modeling objectives, and revisit and adjust those objectives regularly; (2) develop a conceptualization of NFW connectivity using qualitative observations, empirical data, and process‐based modeling; (3) select a model to represent NFW connectivity by balancing both modeling objectives and available resources; (4) use innovative techniques and data sources to validate and calibrate NFW connectivity simulations; and (5) clearly articulate the limits of the resulting NFW connectivity representation. Our review and synthesis of these case studies highlights modeling approaches that incorporate NFW connectivity, demonstrates tradeoffs in model selection, and ultimately provides actionable guidance for future model application and development.

Journal of the American Water Resources Associatio↗
USGS2013

Effectiveness of an integrated hatchery program: Can genetic-based performance differences between hatchery and wild Chinook salmon be avoided?

Performance of wild (W) and hatchery (H) spring Chinook salmon ( Oncorhynchus tshawytscha ) was evaluated for a sixth generation hatchery program. Management techniques to minimize genetic divergence from the wild stock included regular use of wild broodstock and volitional releases of juveniles. Performance of HH, WW, and HW (hatchery female spawned with wild male) crosses was compared in hatchery and stream environments. The WW juveniles emigrated from the hatchery at two to three times the rate of HH fish in the fall (HW intermediate) and 35% more HH than WW adults returned (27% more HW than WW adults). Performance in the stream did not differ statistically between HH and WW fish, but outmigrants (38% WW, 30% HW, and 32% HH fish) during the first 39 days of the 16-month sampling period composed 74% of total outmigrants. Differences among hatchery-reared crosses were partially due to additive genetic effects, were consistent with domestication (increased fitness for the hatchery population in the hatchery program), and suggested that selection against fall emigration from the hatchery was a possible mechanism of domestication.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS1981

Substrate conditions and abundance of lake trout eggs in a traditional spawning area in southeastern Lake Michigan

Spawning by planted lake trout (Salvelinus namaycush) was documented by sampling with a diver-assisted pump in a traditional spawning area in southeastern Lake Michigan near Saugatuck, Michigan in mid-November in 1978 and 1979. Bottom depths at the 11 locations sampled ranged from 3 to 12 m and substrate size from boulders to sand. Periphyton (Cladophora and associated biota) was several millimeters thick at most stations but sparse at the shallowest. The most eggs recovered from a single sample occurred at the shallowest depth (3 m). In both years, some of the small numbers of eggs collected (9 in 1978, 14 in 1979) were alive and fertilized. Laboratory incubation of viable eggs resulted in successful hatching of larvae. When compared with egg densities measured at spawning sites used by self-sustaining populations of lake trout in other lakes, densities in the study are (0-13/m 2 ) appeared to be critically low. Insufficient numbers of eggs, combined with harsh incubation conditions (turbulence, ice scour, sedimentation), were implicated as prime causes for lake trout reproductive failure in the study area, although other factors, such as inappropriate spawning behavior (selection of suboptimal spawning location, depth, or substrate) also may have reduced survival of eggs and larvae.

Lake Michigan↗
USGS2002

Breeding habitat use by sympatric and allopatric populations of Wilson's Warblers and Yellow Warblers

We studied Wilson's Warbler ( Wilsonia pusilla ) and Yellow Warbler ( Dendroica petechia ) habitat use in allopatric and sympatric populations in the Rocky Mountains of northern Colorado and southeastern Wyoming in order to better understand the different habitat needs and interactions of these two species. Foraging Wilson's Warblers and Yellow Warblers used very similar habitat, both selecting larger, more open shrubs. In spite of similar foraging habitat, comparisons of habitat use by the two species at the sympatric sites yielded no evidence of foraging habitat partitioning or exclusion. There was evidence of nesting habitat partitioning. Wilson's Warblers nested on the ground, with some evidence that they used smaller, more densely stemmed shrubs under which to nest. Yellow Warblers are shrub nesters and selected larger, more open shrubs in which to nest. Results provide no evidence that Yellow Warblers can be blamed for population declines in Wilson's Warblers.

Colorado, Wyoming↗
USGS1999

Observations on preferential flow and horizontal transport of nitrogen fertilizer in the unsaturated zone

A study site underlain by a claypan soil was instrumented to examine the transport of fertilizer nitrogen (N) under corn ( Zea mays L.) cultivation. The study was designed to examine N transport within the unsaturated zone and in intedlow (the saturated flow of water on top of the claypan). A 15 N-labeled fertilizer (labeled N), bromide (Br), and chloride (Cl) were used as field tracers. Rapid or prolonged infiltration events allowed water and dissolved solutes to perch on the claypan for brief periods. However, a well-developed network of preferential flow paths quickly diverted water and solutes through the claypan and into the underlying glacial till aquifer. Excess fertilizer N in the unsaturated zone supplied a continuous, but declining input of N to ground water for a period of 15 mo after a single fertilizer application. Calculated solute velocities through the claypan matrix (6.4 × 10 −6 cm s −1 ) were similar to horizontal transport rates along the claypan (3.5 to 7.3 × 10 −6 cm s −1 ) but much slower than infiltration rates determined for preferential flow paths (1.67 × 10 −3 cm s −1 ). These flow paths accounted for 35% of the transport. A seasonally variable, dual mode of transport (matrix and preferential flow) prevented the daypan from being an effective barrier to vertical transport. Simulations of selected field observations, conducted using the variably saturated two-dimensional flow and transport model, VS2DT, confirmed the presence of a dual flow regime in the claypan.

Journal of Environmental Quality↗
USGS2010

Hyperspectral analysis of columbia spotted frog habitat

Wildlife managers increasingly are using remotely sensed imagery to improve habitat delineations and sampling strategies. Advances in remote sensing technology, such as hyperspectral imagery, provide more information than previously was available with multispectral sensors. We evaluated accuracy of high-resolution hyperspectral image classifications to identify wetlands and wetland habitat features important for Columbia spotted frogs (Rana luteiventris) and compared the results to multispectral image classification and United States Geological Survey topographic maps. The study area spanned 3 lake basins in the Salmon River Mountains, Idaho, USA. Hyperspectral data were collected with an airborne sensor on 30 June 2002 and on 8 July 2006. A 12-year comprehensive ground survey of the study area for Columbia spotted frog reproduction served as validation for image classifications. Hyperspectral image classification accuracy of wetlands was high, with a producer's accuracy of 96 (44 wetlands) correctly classified with the 2002 data and 89 (41 wetlands) correctly classified with the 2006 data. We applied habitat-based rules to delineate breeding habitat from other wetlands, and successfully predicted 74 (14 wetlands) of known breeding wetlands for the Columbia spotted frog. Emergent sedge microhabitat classification showed promise for directly predicting Columbia spotted frog egg mass locations within a wetland by correctly identifying 72 (23 of 32) of known locations. Our study indicates hyperspectral imagery can be an effective tool for mapping spotted frog breeding habitat in the selected mountain basins. We conclude that this technique has potential for improving site selection for inventory and monitoring programs conducted across similar wetland habitat and can be a useful tool for delineating wildlife habitats. ?? 2010 The Wildlife Society.

Journal of Wildlife Management↗
USGS1999

Effects of sample size on kernel home range estimates

Kernel methods for estimating home range are being used increasingly in wildlife research, but the effect of sample size on their accuracy is not known. We used computer simulations of 10-200 points/home range and compared accuracy of home range estimates produced by fixed and adaptive kernels with the reference (REF) and least-squares cross-validation (LSCV) methods for determining the amount of smoothing. Simulated home ranges varied from simple to complex shapes created by mixing bivariate normal distributions. We used the size of the 95% home range area and the relative mean squared error of the surface fit to assess the accuracy of the kernel home range estimates. For both measures, the bias and variance approached an asymptote at about 50 observations/home range. The fixed kernel with smoothing selected by LSCV provided the least-biased estimates of the 95% home range area. All kernel methods produced similar surface fit for most simulations, but the fixed kernel with LSCV had the lowest frequency and magnitude of very poor estimates. We reviewed 101 papers published in The Journal of Wildlife Management (JWM) between 1980 and 1997 that estimated animal home ranges. A minority of these papers used nonparametric utilization distribution (UD) estimators, and most did not adequately report sample sizes. We recommend that home range studies using kernel estimates use LSCV to determine the amount of smoothing, obtain a minimum of 30 observations per animal (but preferably a?Y50), and report sample sizes in published results.

Journal of Wildlife Management↗
USGS1994

Relationship between resistance of salmonids to furunculosis and recovery of Aeromonas salmonicida from external mucus

Fish were sampled at the Ed Weed State Fish Hatchery (South Hero, Vermont, USA) in September 1992. Aeromonas salmonicida was common, with concentrations as high as 10 5 to 10 7 colony-forming units per gram of mucus, and readily recovered from most mucus samples obtained from furunculosis-sensitive populations of brook trout ( Salvelinus fontinalis ), lake trout ( Salvelinus namaycush ), and Atlantic salmon (Salmo salar) . The pathogen was the predominant microorganism and accounted for greater than 85% of the total number of bacteria isolated from the mucus of these fish. By comparison, A. salmonicida was recovered only from two rainbow trout ( Oncorhynchus mykiss ), and bacterial frequencies did not exceed 10 3 colony-forming units per gram of mucus. The pathogen was not recovered from the mucus of steelhead ( O. mykiss ) or Rome brown trout ( Salmo trutta ) selectively bred for resistance to furunculosis, even though there was widespread contagion throughout the hatchery and fish were cultured on a common, unprotected water supply.

Journal of Wildlife Diseases↗
USGS2022

Spatial and temporal distribution and habitat selection of native Yellowstone Cutthroat Trout and nonnative Utah Chub

Henrys Lake, Idaho, is a renowned trophy trout fishery that faces an uncertain future following the establishment of Utah Chub (UTC) Gila atraria . Utah Chub were first documented in the lake in 1993 and have become abundant over the past two decades. Little is known about the ecology of UTC, but they typically have negative effects on salmonids in systems where they have been introduced. We sought to fill knowledge gaps in UTC ecology and provide insight on potential interactions with Yellowstone Cutthroat Trout (YCT) Oncorhynchus clarkii bouvieri . Ninety-four YCT and 95 UTC were radio-tagged in spring 2019 and 2020 to better understand potential interactions between YCT and UTC in Henrys Lake. Fish were located via mobile tracking and fixed receivers from June to December 2019 and 2020. In June of both years, YCT and UTC were concentrated in nearshore habitats. As water temperatures increased, UTC were documented in deeper water (mean ± SD = 3.6 ± 1.4 m) and YCT became more concentrated in areas with cold water (e.g., mouths of tributaries, in-lake springs). In July and August, large congregations of UTC were observed. Yellowstone Cutthroat Trout were detected in tributaries from June to August, but no UTC were detected in the tributaries. By late fall (November–December), YCT were located along the shoreline and UTC were detected in the middle of the lake. Both YCT and UTC were observed in areas with dense vegetation. Macrophytes likely provided a food source for UTC and cover from predators for both species. Locations of YCT were negatively related to warm water temperatures, whereas UTC were positively associated with warm water temperatures. Results from this research fill knowledge gaps in UTC and YCT interactions as well as provide valuable insight on the ecology of UTC and adfluvial Cutthroat Trout populations. Furthermore, distribution patterns and habitat selectivity of YCT and UTC in Henrys Lake can be used to inform management decisions for fishery improvement and YCT conservation.

Idaho↗
USGS2022

Permeability measurement and prediction with nuclear magnetic resonance analysis of gas hydrate-bearing sediments recovered from Alaska North Slope 2018 Hydrate-01 Stratigraphic Test Well

Permeability of porous media, such as oil and gas reservoirs, is the crucial material parameter for predicting their hydraulic behavior. A nuclear magnetic resonance (NMR) analyzer is widely used as a powerful tool to predict permeability of various media. NMR T 2 (transverse or spin–spin) relaxation time distribution, which is related to pore size distribution, gives the information to allow calculation of effective (initial) permeability. In this study, we investigate effective, intrinsic (absolute), and relative water and gas permeabilities of hydrate-bearing pressure core samples. These samples were recovered from the Alaska North Slope 2018 Hydrate-01 Stratigraphic Test Well by sidewall pressure coring and then analyzed in a laboratory using both fluid flow test and NMR analyzer. The peak of the NMR T 2 distribution was measured at 10–20 ms using a laboratory NMR analyzer, which compares well with in situ measurements obtained via logging while drilling NMR data for two samples with high gas hydrate saturations ( S h = 76% and 74%). Further, comparison of laboratory NMR T 2 distribution after hydrate dissociation revealed that the hydrate existed in large pore spaces. Effective permeabilities predicted by the Timur-Coates (TC) model and the Schlumberger-Doll-Research (SDR) model, with T 2 cutoff 33 ms, were about an order of magnitude less than the laboratory measured values. Alternative TC model-based calculations with the T 2 cutoff reduced to 10 ms and a newly developed hydraulic radius model better matched the laboratory data. For the analysis of the intrinsic permeabilities, the TC model with a T 2 cutoff of 33 ms and SDR model were greater than the laboratory derived values, while the hydraulic radius model more closely matched the laboratory-derived values. In addition, permeability measurements were also made relative to gas and water under constant three-phase flow (water–gas–hydrate) conditions. After hydrate dissociation, a relative permeability curve was developed for each of the analyzed core samples based on the Corey petrophysical model. The results indicate that the gas permeability changed rapidly at high water saturation around 90%. Thus, we infer that the selection of relative reservoir parameters should focus on the higher water saturation conditions.

Alaska↗
USGS2018

Discussion of “Case study: Oso, Washington, landslide of March 22, 2014-Material properties and failure mechanism” by Timothy D. Stark, Ahmed K. Baghdady, Oldrich Hungr, and Jordan Aaron

The original paper discusses factors that may have contributed to the occurrence and long runout of a disastrous landslide near the community of Oso, Washington, on March 22, 2014. The paper reinforces a prior finding that the long runout likely resulted from liquefaction of wet colluvium that was rapidly loaded by landslide debris impinging from upslope ( Iverson et al. 2015 ). However, the original paper proposes a landslide geometry and chronology that differ from those presented in previous reports, and these differences have implications for interpreting the landslide’s mechanics. The paper also includes factual errors as well as misrepresentations that result from selective inclusion and exclusion of findings previously reported by others. The purposes of this discussion are to place the original paper in context and to rectify some of its mistakes.

Washington↗
USGS2021

Directional selection shifts trait distributions of planted species in dryland restoration

The match between species trait values and local abiotic filters can restrict community membership. An often-implicit assumption of this relationship is that abiotic filters select for a single locally optimal strategy, though difficulty in isolating effects of the abiotic environment from those of dispersal limitation and biotic interactions has resulted in few empirical tests of this assumption. Similar constraints have made it difficult to assess whether the type and intensity of abiotic filters shift along gradients of environmental harshness, as predicted by the stress-dominance hypothesis. We planted 9,216 plants of 29 perennial grass and forb species that had a range of functional trait values and were assigned to a warm, intermediate or cool temperature tolerance pool across eight sites on the Colorado Plateau. We compared the distributions of traits of surviving individuals to null distributions to evaluate whether there were shifts in trait means and variation. Borrowing from phenotypic selection concepts in evolutionary biology, we assessed support for stabilizing, directional and disruptive abiotic filtering of trait distributions and whether these types of filtering varied with initial species pool. Functional composition was significantly different from null distributions for nearly all traits at all sites, with trait variation more restricted in harsher abiotic conditions, supporting the stress-dominance hypothesis. Contrary to expectations, we primarily found evidence for directional selection, which increased in frequency in warm species pools while disruptive selection was found more often in cool and intermediate species pools. Synthesis . This study provides a controlled experimental approach to test the effect of the abiotic environment on plant trait filtering. We found that opportunistic strategies allowing for rapid water acquisition during favourable periods improved survival at warmer sites. Species with these strategies may be expected to benefit from increasing aridity and may be selected for active management efforts. More generally, the prevalence of directional selection may have important implications for dynamic vegetation models that rely on trait distributions for translating environmental variation into ecosystem processes.

Journal of Ecology↗
USGS2007

Comparison of four artificial substrates and the Ponar grab for benthic invertebrate collection

Four different bottom‐placed artificial substrates were compared with the Ponar grab for collecting benthic invertebrates. Artificial substrate samples of organisms were larger and more diverse than those of the grab. Barbeque Basket samplers caught the most taxa and individuals and Beak Trays caught the least. Chironomids and crustaceans were dominant in artificial substrate samples. Exposure habitat (left or right bank) determined taxa availability, whereas sampler design determined suitability for colonization by the taxa. Diversity for Beak Tray samples was lower than that for other artificial substrates but higher than for Ponar samples. The Barbeque Basket, Bull Basket, and Multiple Plate samples were taxonomically similar. Ponar samples were different, and Beak Trays were of intermediate similarity. As qualitative samplers, Barbeque Baskets were 63 percent efficient, followed by Bull Baskets (55 percent), Multiple Plates (48 percent), Beak Trays (38 percent), and Ponar Grabs (6–10 percent). Bull Baskets required the least and Beak Trays the most replicates to be within a preselected percentage error of the mean at the 95 percent probability level for numbers of taxa and individuals, and for diversity. Under conditions of the study, Bull Baskets ranked highest, followed by Barbeque Baskets and Multiple Plates, in selected performance criteria. Differences between grab and artificial substrate samples are explainable in terms of major riverine habitats and characteristics of the collection methods.

Journal of the American Water Resources Associatio↗
USGS2007

Movement and habitat use of stocked juvenile paddlefish in the Ohio River system, Pennsylvania

In 2002 and 2003 we released a total of 66 hatchery-reared, juvenile paddlefish Polyodon spathula (249-318 mm eye-to-fork length) in Pennsylvania's upper Ohio River system and tracked them with radiotelemetry in two different pools of the Ohio and Allegheny rivers to determine (1) poststocking survival, (2) whether release site influences survival, (3) dispersal distance and direction of movement, and (4) habitat selection. Survival was fair (mean = 78% in 2002 and 67% in 2003) for 0.23-0.43-kg paddlefish after 9 weeks. In 2003, fish stocked in the upstream half of the pool had a greater survival (100%) after 63 d than those stocked in the downstream half (44%). Within 4 d of stocking, 77% of juvenile paddlefish were located in tailwaters, and fish found these habitats regardless of stocking location. Habitat measurements at all postdispersal locations had median depths of 5.2 and 6.1 m in 2002 and 2003, respectively, and median near-surface velocities of 0.17 and 0.12 m/s. Fish selected tailwater habitats and avoided habitats with disturbance from commercial barge traffic in both years. ?? Copyright by the American Fisheries Society 2007.

North American Journal of Fisheries Management↗
USGS2018

Visual cues for woodpeckers: light reflectance of decayed wood varies by decay fungus

The appearance of wood substrates is likely relevant to bird species with life histories that require regular interactions with wood for food and shelter. Woodpeckers detect decayed wood for cavity placement or foraging, and some species may be capable of detecting trees decayed by specific fungi; however, a mechanism allowing for such specificity remains unidentified. We hypothesized that decay fungi associated with woodpecker cavity sites alter the substrate reflectance in a species-specific manner that is visually discriminable by woodpeckers. We grew 10 species of wood decay fungi from pure cultures on sterile wood substrates of 3 tree species. We then measured the relative reflectance spectra of decayed and control wood wafers and compared them using the receptor noise-limited (RNL) color discrimination model. The RNL model has been used in studies of feather coloration, egg shells, flowers, and fruit to model how the colors of objects appear to birds. Our analyses indicated 6 of 10 decayed substrate/control comparisons were above the threshold of discrimination (i.e., indicating differences discriminable by avian viewers), and 12 of 13 decayed substrate comparisons were also above threshold for a hypothetical woodpecker. We conclude that woodpeckers should be capable of visually detecting decayed wood on trees where bark is absent, and they should also be able to detect visually species-specific differences in wood substrates decayed by fungi used in this study. Our results provide evidence for a visual mechanism by which woodpeckers could identify and select substrates decayed by specific fungi, which has implications for understanding ecologically important woodpecker–fungus interactions.

Wilson Journal of Ornithology↗
USGS1995

Population differentiation in Pacific salmon: local adaptation, genetic drift, or the environment?

Morphological, behavioral, and life-history differences between Pacific salmon (Oncorhynchus spp.) populations are commonly thought to reflect local adaptation, and it is likewise common to assume that salmon populations separated by small distances are locally adapted. Two alternatives to local adaptation exist: random genetic differentiation owing to genetic drift and founder events, and genetic homogeneity among populations, in which differences reflect differential trait expression in differing environments. Population genetics theory and simulations suggest that both alternatives are possible. With selectively neutral alleles, genetic drift can result in random differentiation despite many strays per generation. Even weak selection can prevent genetic drift in stable populations; however, founder effects can result in random differentiation despite selective pressures. Overlapping generations reduce the potential for random differentiation. Genetic homogeneity can occur despite differences in selective regimes when straying rates are high. In sum, localized differences in selection should not always result in local adaptation. Local adaptation is favored when population sizes are large and stable, selection is consistent over large areas, selective diffeentials are large, and straying rates are neither too high nor too low. Consideration of alternatives to local adaptation would improve both biological research and salmon conservation efforts.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2022

Temporal variation in capture efficiency underrepresents spring out-migrating Bull Trout in a trap-and-haul program

Trap-and-haul programs can maintain connection among habitats for migratory salmonids in fragmented systems. To conserve diversity within and among life history strategies, downstream trap and transport of juvenile salmonids could ideally mimic the natural, underlying out-migration dynamics of the population. A two-way trap-and-haul program is implemented in the lower Clark Fork River, Montana, to conserve adfluvial Bull Trout Salvelinus confluentus. We used PIT technology to assess whether downstream trapping efforts are effectively capturing variation in the out-migration dynamics of juvenile Bull Trout in Graves Creek, a key spawning and rearing tributary in the system. We tagged 821 juvenile Bull Trout in Graves Creek and used these tagged Bull Trout in conjunction with stationary PIT antennas to monitor out-migration and evaluate efficiency of the downstream trapping program. Capture efficiency in Graves Creek varied substantially from autumn to spring, with 89–96% of autumn out-migrating Bull Trout captured and 5–10% of spring out-migrating Bull Trout captured. Overall, we found that Bull Trout transported during the autumn out-migration periods generally reflect the natural out-migration dynamics of the population; however, Bull Trout that out-migrate in the spring are currently underrepresented in the downstream transport program. By understanding the underlying out-migration dynamics of the Bull Trout population in Graves Creek, management of the downstream trapping efforts can focus on minimizing potential selection for or against out-migrants based on timing and age at out-migration. Minimizing selection will conserve variation within the adfluvial life history strategy and therefore maximize resilience of the adfluvial Bull Trout populations.

Idaho, Montana↗