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Truth, models, model sets, AIC, and multimodel inference: a Bayesian perspective

Statistical inference begins with viewing data as realizations of stochastic processes. Mathematical models provide partial descriptions of these processes; inference is the process of using the data to obtain a more complete description of the stochastic processes. Wildlife and ecological scientists have become increasingly concerned with the conditional nature of model-based inference: what if the model is wrong? Over the last 2 decades, Akaike's Information Criterion (AIC) has been widely and increasingly used in wildlife statistics for 2 related purposes, first for model choice and second to quantify model uncertainty. We argue that for the second of these purposes, the Bayesian paradigm provides the natural framework for describing uncertainty associated with model choice and provides the most easily communicated basis for model weighting. Moreover, Bayesian arguments provide the sole justification for interpreting model weights (including AIC weights) as coherent (mathematically self consistent) model probabilities. This interpretation requires treating the model as an exact description of the data-generating mechanism. We discuss the implications of this assumption, and conclude that more emphasis is needed on model checking to provide confidence in the quality of inference.

Journal of Wildlife Management

Asymmetric measures of association, closed data, and multivariate analysis

The association between constant-sum variables Xiand Xjexpressed as percentages can be calculated as a product-moment correlation between Xiand Xj/(100 - Xi) and a correlation between Xjand Xi/(100 - Xj). An asymmetric, square matrix may be formed from these coefficients, and multivariate analysis performed by two methods: singular value decomposition and canonical decomposition. Either analysis avoids problems in the interpretation of correlation coefficients determined from closed arrays, and provides information about dependencies among the variables beyond that obtained from the usual correlation coefficient between Xiand Xj. Two examples show the canonical decomposition to have the greater usefulness. ?? 1980 Plenum Publishing Corporation.

Journal of the International Association for Mathe

The Hengill geothermal area, Iceland: variation of temperature gradients deduced from the maximum depth of seismogenesis

Given a uniform lithology and strain rate and a full seismic data set, the maximum depth of earthquakes may be viewed to a first order as an isotherm. These conditions are approached at the Hengill geothermal area, S. Iceland, a dominantly basaltic area. The temperature at which seismic failure ceases for the strain rates likely at the Hengill geothermal area is determined by analogy with oceanic crust, and is about 650 ?? 50??C. The topographies of the top and bottom of the seismogenic layer were mapped using 617 earthquakes. The thickness of the seismogenic layer is roughly constant and about 3 km. A shallow, aseismic, low-velocity volume within the spreading plate boundary that crosses the area occurs above the top of the seismogenic layer and is interpreted as an isolated body of partial melt. The base of the seismogenic layer has a maximum depth of about 6.5 km beneath the spreading axis and deepens to about 7 km beneath a transform zone in the south of the area. -from Author

Journal of Volcanology and Geothermal Research

Life cycle of a mayfly Hexagenia limbata in the St. Marys River between Lakes Superior and Huron

Length-frequency distribution curves of Hexagenia limbata nymphs collected in May, August, and October 1974 and May 1975 in the St. Marys River between Lakes Superior and Huron were bimodal for each sampling period. These curves, combined with interpretation of nymphal emergence period and mean surface water temperatures, indicate that the population of Hexagenia nymphs in the St. Marys River is composed of two year classes or cohorts. One cohort emerges per season, 2 years after egg deposition.

Journal of Great Lakes Research

Lower temperature terminations of the three-phase region plagioclase-alkali feldspar-liquid

Geological and experimental evidence indicate that the three-phase field, plagioclase-alkalifeldspar-liquid, may terminate in several different ways. The possible terminations have been developed from Schreinemakers' rules governing the disappearance of three-phase fields. In igncous rocks, these different terminations may arise from variations in the relative amounts of additional components in magmas, or from changes of total pressure, or from structural changes that effect the extent of solid solution in feldspar.The three-phase region originates from the intersection of the solidus and the feldspar solvus. The available evidence regarding this intersection is reviewed, as is the evidence for the existence and form of the boundary curve on the feldspar liquidus. The data are used to project a series of isobaric polythermal and isobaric isothermal diagrams for each possible termination . Subsequent discussions relate the theoretical arguments to the natural evidence, suggest the more probable geological environments of some of the terminations , and indicate characteristic features of each termination .It may be possible to identify the type of termination involved in the crystallization of some rocks. The necessary data are the amounts and compositions of both kinds of coexisting feldspars and of the feldspar components of the coexisting liquid at one or more stages of the crystallization process. Volcanic rocks are most suitable for such studies.The terminations explain many of the compositional relationships possible between feldspar crystals and silicate melt under geological and experimental conditions. These compositional relationships are fundamental to understanding the crystallization of igneous rocks and the formation of melts by partial fusion. Other geological applications include a simple explanation for some resorbed feldspars, the separation, correlation, and comparison of porphyritic rock units, interpretation of compositional changes of successive zones of zoned feldspars, and mantling of one feldspar by another. With all types of termination , extensive fractionation yields a liquid rich in Or and Ab that may crystallize to alkali feldspar or feldspars.

Journal of Petrology

Use of behavioral and physiological indicators to evaluate Scaphirhynchus sturgeon spawning success

Thirty gravid, female shovelnose sturgeon ( Scaphirhynchus platorynchus ) were captured in the Lower Missouri River in March 2004 to evaluate the effectiveness of physiology, telemetry and remote sensor technology coupled with change point analysis in identifying when and where Scaphirhynchus sturgeon spawn. Captured sturgeons were instrumented with ultrasonic transmitters and with archival data storage tags (DST) that recorded temperature and pressure. Female sturgeon were tracked through the suspected spawning period. Thereafter, attempts were made to recapture fish to evaluate spawning success. At the time of transmitter implantation, blood and an ovarian biopsy were taken. Reproductive hormones and cortisol were measured in blood. Polarization indices and germinal vesicle breakdown were assessed on the biopsied oocytes to determine readiness to spawn. Behavioral data collected using telemetry and DST sensors were used to determine the direction and magnitude of possible spawning-related movements and to identify the timing of potential spawning events. Upon recapture observations of the ovaries and blood chemistry provided measures of spawning success and comparative indicators to explain differences in observed behavior. Behavioral and physiological indicators of spawning interpreted along with environmental measures may assist in the determination of variables that may cue sturgeon reproduction and the conditions under which sturgeon successfully spawn.

Journal of Applied Ichthyology

Nonstationary demographic state-space models using unreplicated counts for species undergoing environmental stressors

A fundamental task in ecological statistics is to estimate abundance and growth rate distributions from wildlife monitoring data to inform conservation management. Modeling time series of wildlife populations presents a number of challenges from both statistical and ecological perspectives, including discreteness; lack of replication; nonstationarity; and observation, demographic, and other phenomenological processes. Nonstationary dynamics are often exhibited by populations undergoing environmental stressors. Models must account for these characteristics to produce reliable estimates of abundance and trends, yet estimation can be challenging with unreplicated data. We propose nonstationary demographic state-space models using unreplicated counts for populations undergoing environmental stressors. A reduced growth rate model matches the complexity of the unreplicated count data, and a fecundity bound on growth rate distributions allows the separation of processes affecting growth rates like environmental stressors from those affecting abundance external to growth rates like migration. NDSSMs allow for the embedding of nonstationary model components, and we explore the use of changepoints, volatility clustering, and migration processes. We apply the proposed nonstationary models in case studies of herons affected by predator/competitor reestablishment and three bat species affected by a fungal pathogen causing white-nose syndrome. Nonstationary models outperform stationary models and generalized linear mixed effects models according to model scoring and visual inspection of predictions, and provide estimates more consistent with published values. Incorporating migration improves model fit universally, even with approximate one-way immigration, most likely because populations are extirpated, recolonized, and increase multiple-fold over the upper bound set by species fecundity. In addition, estimates of the timing and severity of the environmental stressor differed for models with migration. Including nonstationary and demographic components in a fecundity-bounded growth rate model improves inference and benefits interpretability of hyperparameters. In turn, this adjusts uncertainties in predictions of abundance and growth rates over time, providing the ingredients needed for informed conservation analysis and for directing future monitoring of at-risk species.

Journal of Agricultural, Biological and Environmen

Probability plotting position formulas for flood records with historical information

For purposes of evaluating fitted flood frequency distributions or for purposes of estimating distributions directly from plots of flood peaks versus exceedance probabilities (either by subjective or objective techniques), one needs a probability plotting position formula which can be applied to all of the flood data available: both systematic and historic floods. Some of the formulas in use are simply extensions of existing formulas (such as Hazen and Weibull) used on systematic flood records. New plotting position formulas proposed by Hirsch and Stedinger (1986) and in this paper are based on a recognition that the flood data arises from partially censored sampling of the flood record. The theoretical appropriateness, bias in probability and bias in discharge of the various plotting position formulas are considered. The methods are compared in terms of their effects on flood frequency estimation when an objective curve-fitting method of estimation is employed. Consideration is also given to the correct interpretation of the historical record length and the effect of incorrectly assuming that record length equals the time since the first known historical flood. This assumption is employed in many flood frequency studies and may result in a substantial bias in estimated design flood magnitudes.

Journal of Hydrology

Power laws, discontinuities and regional city size distributions

Urban systems are manifestations of human adaptation to the natural environment. City size distributions are the expression of hierarchical processes acting upon urban systems. In this paper, we test the entire city size distributions for the southeastern and southwestern United States (1990), as well as the size classes in these regions for power law behavior. We interpret the differences in the size of the regional city size distributions as the manifestation of variable growth dynamics dependent upon city size. Size classes in the city size distributions are snapshots of stable states within urban systems in flux.

Journal of Economic Behavior and Organization

Biotic and abiotic factors related to rainbow smelt recruitment in the Wisconsin waters of Lake Superior, 1978-1997

Lake Superior rainbow smelt ( Osmerus mordax ) recruitment to 12-13 months of age in the Wisconsin waters of Lake Superior varied by a factor of 9.3 during 1978-1997. Management agencies have sought models that accurately predict recruitment, but no satisfactory models had previously been developed. In this study, modeling was conducted to determine which factors best explained recruitment variability. The Ricker stock-recruitment model derived from only the paired stock and recruit data accounted for 63% of the variability in recruitment data. The functional relationship that accounted for the greatest amount of recruitment variation (81%) included rainbow smelt stock size, May rainfall, and bloater ( Coregonus hoyi ) biomass. Model results were interpreted to mean that recruitment was affected negatively by increased river flows from increased rainfall, and affected positively by the biomass of bloater, and those results were interpreted to mean that bloater mediated the effects of lake trout predation on rainbow smelt recruits. Model results were also interpreted to mean that stock size caused compensatory, density-dependent mortality on rainbow smelt recruits. Correlations observed here may be of value to managers seeking approaches to either enhance or control populations of this species, which is not indigenous to the Great Lakes.

Journal of Great Lakes Research

The Augustine magmatic system as revealed by seismic tomography and relocated earthquake hypocenters from 1994 through 2009

We incorporate 14 years of earthquake data from the Alaska Volcano Observatory with data from a 1975 controlled‐source seismic experiment to obtain the three‐dimensional P and S wave velocity structure and the first high‐precision earthquake locations at Augustine Volcano to be calculated in a fully three‐dimensional velocity model. Velocity tomography shows two main features beneath Augustine: a narrow, high‐velocity column beneath the summit, extending from ∼2 km depth to the surface, and elevated velocities on the south flank. Our relocation results allow a thorough analysis of the spatio‐temoral patterns of seismicity and the relationship to the magmatic and eruptive activity. Background seismicity is centered beneath the summit at an average depth of 0.6 km above sea level. In the weeks leading to the January 2006 eruption of Augustine, seismicity focused on a NW‐SE line along the trend of an inflating dike. A series of drumbeat earthquakes occurred in the early weeks of the eruption, indicating further magma transport through the same dike system. During the six months following the onset of the eruption, the otherwise quiescent region 1 to 5 km below sea level centered beneath the summit became seismically active with two groups of earthquakes, differentiated by frequency content. The deep longer‐period earthquakes occurred during the eruption and are interpreted as resulting from the movement of magma toward the summit, and the post‐eruptive shorter‐period earthquakes may be due to the relaxation of an emptied magma tube. The seismicity subsequently returned to its normal background rates and patterns.

Alaska

The emplacement of ophiolites by collision

Ophiolites, recognized in most of the world's orogenic belts, are generally interpreted to be oceanic crust and upper mantle (lithosphere) fragments that have been incorporated into continental margins at consuming plate boundaries. We suggest that the mechanism for ophiolite emplacement is the same in both the Alpine and Andean-type orogenes. In both geological settings, obduction of oceanic lithosphere onto the continental lithosphere is caused by the convergence of light, buoyant bodies such as oceanic plateaus, continental slivers, island arcs, or old hot spot traces. For example, the Troodos ophiolite complex, previously interpreted by some workers as resulting from continental collision, may have been emplaced by the collision of Cyprus with the Eratosthenes Plateau embedded in the oceanic eastern Mediterranean crust. On the other hand, the Upper Jurassic Coast Range Ophiolites of California, previously interpreted as resulting from typical oceanic subduction, may be the result of a continuous injection of thick nonsubductable packages of light, continentally derived sedimentary rocks, seamounts, and plateaus into the subduction zones. Many other ophiolite complexes may be similarly related to accreted terranes.

Journal of Geophysical Research

A qualitative evaluation of Landsat imagery of Australian rangelands

The capability of multidate, multispectral ERTS-1 imagery of three different rangeland areas within Australia was evaluated for its usefulness in preparing inventories of rangeland types, assessing on a broad scale range condition within these rangeland types, and assessing the response of rangelands to rainfall events over large areas. For the three divergent rangeland test areas, centered on Broken W, Alice Springs and Kalgoorlie, detailed interpretation of the imagery only partially satisfied the information requirements set. It was most useful in the Broken Hill area where fenceline contrasts in range condition were readily visible. At this and the other sites an overstorey of trees made interpretation difficult. Whilst the low resolution characteristics and the lack of stereoscopic coverage hindered interpretation it was felt that this type of imagery with its vast coverage, present low cost and potential for repeated sampling is a useful addition to conventional aerial photography for all rangeland types.

The Australian Rangeland Journal

Variability and consistency in wildfire susceptibility: Insights from a national compilation

Background Wildfire risk in the United States is rising and remains a land management priority. The quantitative wildfire risk assessment (QWRA) framework integrates fuels, topography, weather and values at risk to estimate the potential change in value from wildfire. Within this, response functions (RFs) represent how values respond to fire intensity. These are often based on expert judgment, but variation across assessments is unclear. Aims This study uses data from the US Geological Survey (USGS) Wildfire Hazard and Risk Assessment Clearinghouse to characterize consistency and variation across categories and contexts. Methods We applied descriptive statistics to summarize RFs, using tables, box-and-whisker plots and heat maps stratified by highly valued resource or asset (HVRA) category and spatial scale. Key results RFs and value definitions vary, especially for ecosystem-related resources. Some functions, such as for buildings in the wildland–urban interface (WUI), translate well across contexts, while others require more input. Conclusions Some functions are broadly transferable, while others need customization. This analysis provides references and starting points for improvement to RFs in QWRAs. Interpretations Expanding the clearinghouse and dataset and building more transparency in expert elicitation can build trust among communities, agencies and end-users, and can support efficient use of limited resources to mitigate wildfire risk.

International Journal of Wildland Fire

Depositional environments of the Pennsylvanian Pottsville Formation in the Black Warrior basin of Alabama

The Pennsylvanian Pottsville Formation of the Black Warrior basin in Alabama comprises as much as 3000 m of shale, sandstone, and coal. The boundary between the informal units of the lower Pottsville and the upper Pottsville is the base of the Black Creek coal group, in the middle part of the section. Lower Pottsville strata include orthoquartzitic sandstone, shale, and coal interpreted as having been deposited in a barrier/back-barrier setting. Upper Pottsville strata consist of lithic arenite, shale, coal, and minor amounts of orthoquartzite, and are interpreted as representing a lateral gradation from lower delta plain to barrier bar. Previous studies indicated northward sediment dispersal. The change in sedimentation patterns in the middle part of the Pottsville suggests introduction into the basin of sediments from an eastern source during Pottsville deposition.

Journal of Sedimentary Petrology

HRSC: High resolution stereo camera

The High Resolution Stereo Camera (HRSC) on Mars Express has delivered a wealth of image data, amounting to over 2.5 TB from the start of the mapping phase in January 2004 to September 2008. In that time, more than a third of Mars was covered at a resolution of 10-20 m/pixel in stereo and colour. After five years in orbit, HRSC is still in excellent shape, and it could continue to operate for many more years. HRSC has proven its ability to close the gap between the low-resolution Viking image data and the high-resolution Mars Orbiter Camera images, leading to a global picture of the geological evolution of Mars that is now much clearer than ever before. Derived highest-resolution terrain model data have closed major gaps and provided an unprecedented insight into the shape of the surface, which is paramount not only for surface analysis and geological interpretation, but also for combination with and analysis of data from other instruments, as well as in planning for future missions. This chapter presents the scientific output from data analysis and highlevel data processing, complemented by a summary of how the experiment is conducted by the HRSC team members working in geoscience, atmospheric science, photogrammetry and spectrophotometry. Many of these contributions have been or will be published in peer-reviewed journals and special issues. They form a cross-section of the scientific output, either by summarising the new geoscientific picture of Mars provided by HRSC or by detailing some of the topics of data analysis concerning photogrammetry, cartography and spectral data analysis.

Conference Paper

Origins and nature of large explosive eruptions in the lower East Rift Zone of Kīlauea volcano, Hawaii: Insights from ash characterization and geochemistry

Several powerful explosive eruptions have taken place in the populated lower East Rift Zone of Kīlauea within the past ∼750 years. These have created distinctive landforms, including a tephra rim enclosing Puʻulena Crater immediately south of the Puna Geothermal Venture power station, a tuff cone at Kapoho Crater near the eastern cape of the Island of Hawaiʻi, and a set of littoral cones, the Sand Hill in Nānāwale, where the 1840 lava flow poured into the ocean. Kapoho Crater tuff cone is the largest of these recent pyroclastic features. Mineral, glass, and melt inclusion analyses of tuff cone ash and later fissure-related scoriaceous materials also found within the crater indicate slightly evolved basaltic magmas (1120–1130 °C) that are compositionally similar to parts of the effusive lower East Rift Zone eruptions in 1955 and 2018. Tuff cone magmas were stored at depths of ∼2.5–3.5 km and had pre-eruptive volatile contents (0.5–0.8 wt% H 2 O, 280–340 ppm CO 2 , 1400–1800 ppm S) similar to other Kīlauea eruptions (e.g., 1959, 1960), suggesting that internal magma properties were unlikely to account for the unusual explosiveness of this eruption. Tephra componentry, grain-size analyses, and field observations confirm that the cone grew during a phreatomagmatic eruption mostly of vitric ash, probably where a fissure opened across the coastline or shallow ocean floor nearby. Supporting this hypothesis is the identification of at least two genera of marine diatoms within tuff cone strata. Sand Hill littoral cone ash is also vitric like that of Kapoho Crater, but distinctly coarser with abundant fluidal ejecta represented. In contrast, the Puʻulena Crater eruption deposited lithic ash and related blocks with minor juvenile magmatic contribution; a phreatomagmatic eruption that was dominantly phreatic. Differences in eruption styles are related to unique mechanics that tephra analyses help us interpret. While powerful explosive eruptions in the lower East Rift Zone are rare, they present a definite future hazard for inhabitants in this part of Hawaii.

Hawaii

High rates of inflation during a noneruptive episode of seismic unrest at Semisopochnoi Volcano, Alaska in 2014–2015

Magma intrusion rate is a key parameter in eruption triggering but is poorly quantified in existing geodetic studies. Here we examine two episodes of rapid inflation in this context. Two noneruptive microseismic swarms were recorded at Semisopochnoi Volcano, Alaska in 2014–2015. We use differential SAR techniques and TerraSAR‐X images to document surface deformation from 2011 to 2015, which comprises island‐wide radial inflation totaling ~25 cm (+/−1 cm) line of sight displacement in 2014–2015. Multiple source geometries are tested in an inversion of the deformation data, and InSAR data are best fit by a spheroid trending to the northeast and plunging to the southeast, with a major axis of ~4 km and minor axes of ~1 km, directly under the central caldera of Semisopochnoi. In 2014, a modeled influx of 0.043 km 3 of magma caused line of sight displacement of ~17 cm. This magma was stored at a depth of ~8 km, until 2015 when 0.029 km 3 was added. Along with the definition of inflation source parameters, the recorded seismic events are relocated using differential travel times. These relocated events outline a linear aseismic area within a larger zone of shallow (<10 km) seismicity. This aseismic region aligns with the centroid of the deformation model. Based on these geodetic and seismic models, the plumbing system at Semisopochnoi is interpreted as a spheroidal magma storage zone at a depth of ˜8 km below a linear feature of partial melt. The observed deformation and seismicity appear to result from rapid injection into this main storage region.

Alaska