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USGS2019

The ecology of chronic wasting disease in wildlife

Prions are misfolded infectious proteins responsible for a group of fatal neurodegenerative diseases termed transmissible spongiform encephalopathy or prion diseases. Chronic Wasting Disease (CWD) is the prion disease with the highest spillover potential, affecting at least seven Cervidae (deer) species. The zoonotic potential of CWD is inconclusive and cannot be ruled out. A risk of infection for other domestic and wildlife species is also plausible. Here, we review the current status of the knowledge with respect to CWD ecology in wildlife. Our current understanding of the geographic distribution of CWD lacks spatial and temporal detail, does not consider the biogeography of infectious diseases, and is largely biased by sampling based on hunters' cooperation and funding available for each region. Limitations of the methods used for data collection suggest that the extent and prevalence of CWD in wildlife is underestimated. If the zoonotic potential of CWD is confirmed in the short term, as suggested by recent results obtained in experimental animal models, there will be limited accurate epidemiological data to inform public health. Research gaps in CWD prion ecology include the need to identify specific biological characteristics of potential CWD reservoir species that better explain susceptibility to spillover, landscape and climate configurations that are suitable for CWD transmission, and the magnitude of sampling bias in our current understanding of CWD distribution and risk. Addressing these research gaps will help anticipate novel areas and species where CWD spillover is expected, which will inform control strategies. From an ecological perspective, control strategies could include assessing restoration of natural predators of CWD reservoirs, ultrasensitive CWD detection in biotic and abiotic reservoirs, and deer density and landscape modification to reduce CWD spread and prevalence.

Biological Reviews↗

USGS2015

Ecosystem consequences of changing inputs of terrestrial dissolved organic matter to lakes: current knowledge and future challenges

Lake ecosystems and the services that they provide to people are profoundly influenced by dissolved organic matter derived from terrestrial plant tissues. These terrestrial dissolved organic matter (tDOM) inputs to lakes have changed substantially in recent decades, and will likely continue to change. In this paper, we first briefly review the substantial literature describing tDOM effects on lakes and ongoing changes in tDOM inputs. We then identify and provide examples of four major challenges which limit predictions about the implications of tDOM change for lakes, as follows: First, it is currently difficult to forecast future tDOM inputs for particular lakes or lake regions. Second, tDOM influences ecosystems via complex, interacting, physical-chemical-biological effects and our holistic understanding of those effects is still rudimentary. Third, non-linearities and thresholds in relationships between tDOM inputs and ecosystem processes have not been well described. Fourth, much understanding of tDOM effects is built on comparative studies across space that may not capture likely responses through time. We conclude by identifying research approaches that may be important for overcoming those challenges in order to provide policy- and management-relevant predictions about the implications of changing tDOM inputs for lakes.

Ecosystems↗

USGS2020

Holocene paleoclimate change in the western US: The importance of chronology in discerning patterns and drivers

Sediment in lakes and meadows forms a powerful archive that can be used to reconstruct environmental change through time. Reconstructions of lake level, of chemical, biological, and hydrological conditions, and of surrounding vegetation provide detailed information about past climate conditions, both locally and regionally. Indeed, most of our current knowledge of centennial- to millennial-scale climate variability in the arid western United States, where information about past hydroclimate is particularly important, comes from such sediment-based reconstructions. The pressing need for robust, precise predictions of future conditions is a significant motivation for paleoclimate science, and current research questions frequently require Holocene reconstructions to be resolved at sub-centennial timescales. Increasingly, regional syntheses seek to identify synoptic-scale patterns similar to those defined from modern observations (seasonal, interannual, multi-decadal, etc.) or to compare with the output of climate model simulations. However, the age control on existing records, especially those more than about 20 years old, is often sufficient only for millennial-scale interpretation. Here we assess the age control for 84 published and unpublished records from lakes and meadows in the Great Basin, California, and desert southwest, and use Bayesian modeling to evaluate the 95% uncertainty ranges for the 42 best-dated records. In the Late Holocene, about half of the 42 records have <400-year mean uncertainty ranges; however, high-precision age control is especially critical for young records, used to develop an accurate understanding of a proxy’s response to known climate variations. In the Middle Holocene, records vary from 400 to >800-year mean uncertainty and records of the Early Holocene have 600- to >1400-year mean uncertainty ranges. We find that the largest control on modeled uncertainties is dating density, with at least 2 dates/kyr being optimal and suggest obtaining “range-finder” dates at the onset of a study to better predict the total number of dates needed for an adequate age model. Such a density avoids a commonly observed phenomenon of significant peaks in uncertainty arising in gaps between age control points. Analysis of the uncertainties associated with proxy shifts reveal that more than half are >400 years. Although such large uncertainties currently prevent sub-centennial interpretations in most cases, increased dating density, strategic use of limited funds (including budgeting for a 2 date/kyr minimum at the proposal stage), construction of age-depth models with Bayesian methods, and critical evaluation of chronological uncertainty will shed light on past climate variability at finer timescales, enhancing our understanding of global and regional drivers of western U.S. climate.

California, Idaho, Nevada, Oregon, Utah↗

USGS2004

When synthetic chemicals degrade in the environment: What are the absolute fate, effects, and potential risks to humans and the ecosystem?

Various processes degrade synthetic chemicals—pesticides, pharmaceuticals, biocides, and industrials—in the environment ( 1 , 2 ). Consequently, the environment may be exposed to a mixture of the parent compounds and any resulting degradation products (degradates). Recent advances in analytical methodology and greater access to analytical standards have advanced degradates research ( 3 , 4 ). Specifically, research on pesticides has found degradates in surface water ( 5 – 10 ), groundwater ( 11 – 13 ), precipitation ( 14 – 16 ), air ( 17 , 18 ), and sediment ( 19 , 20 ). Pharmaceuticals and detergent degradates also exist in the environment ( 21 – 23 ). Figure 1 shows that degradates were detected as often as or more frequently than the parent compound. Although some regulatory schemes require information about the impacts of degradates on human and environmental health, that information does not exist for many compounds ( 25 , 26 ). Pesticides are the exception. In this article, we bring together the available data to address the environmental behavior of degradates and their effects on organisms and discuss how to identify substances of potential concern. In addition, we cite gaps in the current knowledge and make recommendations for future research requirements. While the article focuses on pesticides, we believe these observations can be extended to biologically active compounds and some industrial substances.

Environmental Science & Technology↗

USGS2022

Contaminants of emerging concern in the Great Lakes: Science to inform management practices for protecting the health and integrity of wildlife populations from adverse effects: GLRI action plan I, focus area 1, goal 5

Executive Summary: Under Action Plan I (2010-2014) of the Great Lakes Restoration Initiative (GLRI), Federal and Academic partners began an investigation of the presence and distribution of contaminants of emerging concern (CECs) in the Great Lakes and potential impacts on fish and wildlife. The term CECs is applied to a broad range of chemicals that are currently in use but for which we currently lack good understanding of whether fish, wildlife, or humans are being exposed and/or whether negative health or environmental effects are expected if exposure occurs. Pharmaceuticals, personal care products, flame retardants, many current use pesticides, and poly- and perfluorinated chemicals are some well-known groups of CECs, but there is no definitive or comprehensive list that can be used to support the management of CECs to reduce impacts on the Great Lakes ecosystem. Four overarching goals were identified for this collaborative investigation: 1. Evaluate the sources, occurrence, and distribution of CECs across the Great Lakes Basin. 2. Examine associations between the distribution of CECs and land-use patterns. 3. Review both scientific literature and field-generated data to determine the potential for CECs to cause adverse effects on Great Lakes fish and wildlife populations. 4. Develop efficient strategies to survey and/or monitor for threats that CECs may pose in order to take effective management actions before those threats evolve into large scale impacts on Great Lakes ecosystems or the services they provide. Achievement of these goals ensures progress towards Focus Area 1: Toxic Substances and Areas of Concern from GLRI Action Plan I, Goal 5: “ The health and integrity of wildlife populations and habitat are protected from adverse chemical and biological effects associated with the presence of toxic substances in the Great Lakes Basin ”. This large-scale research effort was comprised of individual and collaborative projects from multiple federal agencies and academic institutions, involving over 85 investigators, and overseen by the U.S. Environmental Protection Agency (EPA) Region 5, Great Lakes National Program Office. Partners include the United States Geological Survey, the National Oceanic and Atmospheric Administration, U.S. Fish and Wildlife Service, Saint Cloud State University, the U.S. EPA Office of Research and Development, and the U.S. Army Corps of Engineers. Key findings: 1. Contaminants of emerging concern were found throughout the monitored Great Lakes tributaries, but types and concentrations vary in association with regional land use. CECs were detected in nearly all samples collected. The type and concentration of the specific contaminants detected varied considerably among field sites and in association with land use type, such as urban, agricultural, wetland, 2 or forest. Contaminants were detected in the water column, sediment, and tissues of all species surveyed in the current work (mussels, aquatic insects, fish, and insect-eating birds). 2. There were over 20 contaminants for which CEC concentrations approached or exceeded those reported to cause toxicity in laboratory experiments. This was based on detection in water, sediments and or biota at one or more field sites. These contaminants represent compounds that warrant further investigation and monitoring with respect to potential impacts in certain areas of the Great Lakes basin. Based on the present investigation, compounds of greatest concern include: polycyclic aromatic hydrocarbons, associated with oil-based products and combustion of organic matter; atrazine, an herbicide; dichlorvos, an insecticide; and ibuprofen and venlafaxine, both pharmaceuticals. 3. Results suggest that mixtures of CECs presently found in most Great Lakes tributary locations surveyed may elicit subtle biological effects, but likely are not, alone, causing obvious detriment to current communities of fish and wildlife. CECs detected in the Great Lakes were associated with subtle biological effects like changes in gene expression, altered circulating glucose, etc. in both wild-caught and laboratory-reared organisms. These effects were generally not indicative of reproductive failure or mortality. However, the effects may have more serious implications when combined with other sources of stress like habitat degradation, changing climate conditions, and competition with invasive species. Due to limited historical data, it is unknown whether severe CEC-related impacts have already affected aquatic communities in waterbodies that have received long-term inputs of these contaminants. Likewise, under Action Plan I, biological effects were not necessarily evaluated at the sites where CEC concentrations exceeding laboratory toxicity thresholds were detected. As a result, strategic, ongoing surveillance and monitoring of CECs is warranted. This collaborative investigation resulted in new tools, approaches, and data that can be used to inform and support the management of CECs to reduce their impacts on Great Lakes natural resources. The following products of this research effort are available through https://communities.geoplatform.gov/glri/ or by contacting the investigators (see technical chapters found in Appendices A-F): 1. Database of CEC occurrence and concentrations in US tributary streams. The database includes CEC detections in water, sediment, and fish and wildlife tissues, and represents the most comprehensive survey of CECs in the Great Lakes Region. 2. Synopses of results and key findings. Integrated summaries of results, conclusions, and management implications of the CEC research are available through reports, topical fact sheets, and presentations. 3. Technical publications: This collaborative research effort has resulted in over 50 peer-reviewed publications, agency reports, and data releases that can be of use to resource managers, the scientific community, and members of the public. 4. Innovative tools. Innovative monitoring devices, sampling equipment, conceptual frameworks, and software applications were developed over the course of this 3 research. These tools are transferable to stakeholders via internet accessibility or via specifications, instructions, and demonstration detailed in technical publications. Hypotheses to guide CECs research under Action Plan II. Findings from 2010-2014 were used to guide further research in 2015-2018 for basin-wide surveillance of CECs and for sites warranting further study of potential biological impacts of CECs. Additional surveillance included both evaluation of additional classes of contaminants and expanded lists for chemical classes shown to be of greatest concern. Mixtures of some of the most frequently detected contaminants were also tested in laboratory studies to understand whether long term exposures to multiple contaminants may result in effects not evident from uncontrolled, short-term field experiments.

Great Lakes↗

USGS2017

Evaluating simplistic methods to understand current distributions and forecast distribution changes under climate change scenarios: An example with coypu ( Myocastor coypus )

Invasive species provide a unique opportunity to evaluate factors controlling biogeographic distributions; we can consider introduction success as an experiment testing suitability of environmental conditions. Predicting potential distributions of spreading species is not easy, and forecasting potential distributions with changing climate is even more difficult. Using the globally invasive coypu ( Myocastor coypus [Molina, 1782]), we evaluate and compare the utility of a simplistic ecophysiological based model and a correlative model to predict current and future distribution. The ecophysiological model was based on winter temperature relationships with nutria survival. We developed correlative statistical models using the Software for Assisted Habitat Modeling and biologically relevant climate data with a global extent. We applied the ecophysiological based model to several global circulation model ( GCM ) predictions for mid-century. We used global coypu introduction data to evaluate these models and to explore a hypothesized physiological limitation, finding general agreement with known coypu distribution locally and globally and support for an upper thermal tolerance threshold. Global circulation model based model results showed variability in coypu predicted distribution among GCMs , but had general agreement of increasing suitable area in the USA. Our methods highlighted the dynamic nature of the edges of the coypu distribution due to climate non-equilibrium, and uncertainty associated with forecasting future distributions. Areas deemed suitable habitat, especially those on the edge of the current known range, could be used for early detection of the spread of coypu populations for management purposes. Combining approaches can be beneficial to predicting potential distributions of invasive species now and in the future and in exploring hypotheses of factors controlling distributions.

NeoBiota↗

USGS2023

Identifying research in support of the management and control of dreissenid mussels in the western United States

On February 9–10, 2022, the Pacific States Marine Fisheries Commission, U.S. Fish and Wildlife Service, U.S. Geological Survey, and Washington State University hosted a workshop to establish research priorities that support the implementation of action items listed in a current invasive species management plan, the Quagga and Zebra Mussel Action Plan (QZAP) 2.0, that are intended to limit the establishment and spread of quagga and zebra mussels in the western United States. The workshop focus was on developing research priorities for the thematic areas that are addressed in QZAP 2.0: 1) early detection monitoring, 2) prevention and containment, 3) control and management, and 4) rapid response. In addition, research priorities were developed for a fifth thematic area that addressed dreissenid mussel biology. Forty scientists participated in the two-day workshop. Prior to the workshop, participants were asked to review and rank research priorities that were established for a previous version of the QZAP and to offer suggestions on emerging research priorities. During the workshop, subject matter experts presented information describing current knowledge of research and information associated with the thematic areas of early detection monitoring, prevention and containment, rapid response, control and management, and biology in the context of strategies and actions listed in QZAP 2.0. The rankings of previous research priorities and suggestions of emerging priorities were then reviewed, and a revised list of research priorities was formed. The list of research priorities is presented by thematic area.

Management of Biological Invasions↗

USGS2010

Alteration of streamflow magnitudes and potential ecological consequences: A multiregional assessment

Human impacts on watershed hydrology are widespread in the US, but the prevalence and severity of stream-flow alteration and its potential ecological consequences have not been quantified on a national scale. We assessed streamflow alteration at 2888 streamflow monitoring sites throughout the conterminous US. The magnitudes of mean annual (1980–2007) minimum and maximum streamflows were found to have been altered in 86% of assessed streams. The occurrence, type, and severity of streamflow alteration differed markedly between arid and wet climates. Biological assessments conducted on a subset of these streams showed that, relative to eight chemical and physical covariates, diminished flow magnitudes were the primary predictors of biological integrity for fish and macroinvertebrate communities. In addition, the likelihood of biological impairment doubled with increasing severity of diminished streamflows. Among streams with diminished flow magnitudes, increasingly common fish and macroinvertebrate taxa possessed traits characteristic of lake or pond habitats, including a preference for fine-grained substrates and slow-moving currents, as well as the ability to temporarily leave the aquatic environment.

Frontiers in Ecology and the Environment↗

USGS2015

Baseline blood Pb levels of black-necked stilts on the upper Texas coast

There are no known biological requirements for lead (Pb), and elevated Pb levels in birds can cause a variety of sub-lethal effects and mortality. Historic and current levels of Pb in mottled ducks ( Anas fulvigula ) suggest that environmental sources of Pb remain available on the upper Texas coast. Because of potential risks of Pb exposure among coexisting marsh birds, black-necked stilt ( Himantopus mexicanus ) blood Pb concentrations were measured during the breeding season. Almost 80 % (n = 120) of 152 sampled stilts exceeded the background threshold (>20 μg/dL) for Pb exposure. However, blood Pb concentrations did not vary by age or gender, and toxic or potentially lethal concentrations were rare (<5 %). Consistent, low-level blood Pb concentrations of black-necked stilts in this study suggest the presence of readily bioavailable sources of Pb, although potential impacts on local stilt populations remain unclear.

Bulletin of Environmental Contamination and Toxico↗

USGS2021

Exploiting the physiology of lampreys to refine methods of control and conservation

Lampreys (order: Petromyzontiformes) represent one of two extant groups of jawless fishes, also called cyclostomes. Lampreys have a variety of unique features that distinguish them from other fishes. Here we review the physiological features of lampreys that have contributed to their evolutionary and ecological success. The term physiology is used broadly to also include traits involving multiple levels of biological organization, like swimming performance, that have a strong but not exclusively physiological basis. We also provide examples of how sea lamprey traits are currently being used or investigated to control invasive populations in the Great Lakes, such as reduced capacity to detoxify lampricides, inability to surmount low barriers or dams, and sensitivity to several lamprey-specific chemosensory pheromones and alarm cues. Specific suggestions are also provided for how an improved knowledge of lamprey physiological traits could be exploited for more effective conservation of native lampreys and lead to the development of next generation sea lamprey control and conservation tools.

Journal of Great Lakes Research↗

USGS2012

Evidence of recent climate change within the historic range of Rio Grande cutthroat trout: implications for management and future persistence

Evidence of anthropogenically influenced climate change has motivated natural resource managers to incorporate adaptive measures to minimize risks to sensitive and threatened species. Detecting trends in climate variables (i.e., air temperature and hydrology) can serve as a valuable management tool for protecting vulnerable species by increasing our understanding of localized conditions and trends. The Rio Grande cutthroat trout Oncorhynchus clarkii virginalis has suffered a severe decline in its historical distribution, with the majority of current populations persisting in isolated headwater streams. To evaluate recent climate change within the subspecies' historical range, we examined trends in average air temperatures, biologically important hydrological variables (timing of snowmelt and seasonal flows), and the April 1 snow water equivalent over the last 45 years (1963–2007). While rates of change in all three metrics were variable across sites, rangewide patterns were evident. Across the subspecies' historical range, average annual air temperatures increased (0.29°C per decade) and the timing of snowmelt shifted 10.6 d earlier in the year (2.3 d/decade). Flows increased during biologically important periods, including winter (January 1–March 31; 6.6% increase per decade), prespawning (April 1–May 14; 6.9% increase per decade), and spawning (May 15–June 15; 4.2% increase per decade) and decreased in summer (June 16–September 15; 1.9% decrease per decade). Evidence of decreasing April 1 snow water equivalent (5.3% per decade) was also observed. While the impacts of these changes at the population level are equivocal, it is likely that negative effects would influence the subspecies by altering its distribution, decreasing available habitat, and altering the timing of important life history components. Continued monitoring and proactive management will be required to increase the resiliency of remaining populations to ensure long-term persistence and protection in a changing climate.

Colorado;New Mexico↗

USGS2017

Northern Prairie Wildlife Research Center—Celebrating 50 years of science

The Northern Prairie Wildlife Research Center (NPWRC) celebrated its 50-year anniversary in 2015. This report is written in support of that observance. We document why and how the NPWRC came to be and describe some of its many accomplishments and the influence the Center’s research program has had on natural resource management. The history is organized by major research themes, proceeds somewhat chronologically within each theme, and covers the Center’s first 50 years of research. During that period, Center scientists authored more than 1,700 publications and reports. More than 1,000 seasonal or temporary field personnel, and more than 100 graduate students, contributed to the Center’s success; many went on to have exemplary careers in natural resource management, conservation, and education. The mission of the Northern Prairie Wildlife Research Center today remains true to the original vision: to provide the knowledge needed to understand, conserve, and manage the Nation’s natural resources for current and future generations, with an emphasis on species and ecosystems of the northern Great Plains. The Center’s first 50 years of applied biological research provides a deep scientific foundation on which to address emerging issues for the natural resources in the northern Great Plains and beyond.

Circular↗

USGS2012

Sediment cores and chemistry for the Kootenai River White Sturgeon Habitat Restoration Project, Boundary County, Idaho

The Kootenai Tribe of Idaho, in cooperation with local, State, Federal, and Canadian agency co-managers and scientists, is assessing the feasibility of a Kootenai River habitat restoration project in Boundary County, Idaho. This project is oriented toward recovery of the endangered Kootenai River white sturgeon (Acipenser transmontanus) population, and simultaneously targets habitat-based recovery of other native river biota. Projects currently (2010) under consideration include modifying the channel and flood plain, installing in-stream structures, and creating wetlands to improve the physical and biological functions of the ecosystem. River restoration is a complex undertaking that requires a thorough understanding of the river. To assist in evaluating the feasibility of this endeavor, the U.S. Geological Survey collected and analyzed the physical and chemical nature of sediment cores collected at 24 locations in the river. Core depths ranged from 4.6 to 15.2 meters; 21 cores reached a depth of 15.2 meters. The sediment was screened for the presence of chemical constituents that could have harmful effects if released during restoration activities. The analysis shows that concentrations of harmful chemical constituents do not exceed guideline limits that were published by the U.S. Army Corps of Engineers in 2006.

Idaho↗

USGS2012

Ecological impacts of non-native species

Non-native species are considered one of the greatest threats to freshwater biodiversity worldwide (Drake et al. 1989; Allen and Flecker 1993; Dudgeon et al. 2005). Some of the first hypotheses proposed to explain global patterns of amphibian declines included the effects of non-native species (Barinaga 1990; Blaustein and Wake 1990; Wake and Morowitz 1991). Evidence for the impact of non-native species on amphibians stems (1) from correlative research that relates the distribution or abundance of a species to that of a putative non-native species, and (2) from experimental tests of the effects of a non-native species on survival, growth, development or behaviour of a target species (Kats and Ferrer 2003). Over the past two decades, research on the effects of non-native species on amphibians has mostly focused on introduced aquatic predators, particularly fish. Recent research has shifted to more complex ecological relationships such as influences of sub-lethal stressors (e.g. contaminants) on the effects of non-native species (Linder et al. 2003; Sih et al. 2004), non-native species as vectors of disease (Daszak et al. 2004; Garner et al. 2006), hybridization between non-natives and native congeners (Riley et al. 2003; Storfer et al. 2004), and the alteration of food-webs by non-native species (Nystrom et al. 2001). Other research has examined the interaction of non-native species in terms of facilitation (i.e. one non-native enabling another to become established or spread) or the synergistic effects of multiple non-native species on native amphibians, the so-called invasional meltdown hypothesis (Simerloff and Von Holle 1999). Although there is evidence that some non-native species may interact (Ricciardi 2001), there has yet to be convincing evidence that such interactions have led to an accelerated increase in the number of non-native species and cumulative impacts are still uncertain (Simberloff 2006). Applied research on the control, eradication, and management of non-native species has only just begun but some promising results have already emerged (see below), giving hope to a very difficult conservation issue. This chapter provides an overview of the role of non-native species in amphibian declines and summarizes the current state of knowledge of non-native species that are known, or considered to be, a threat to amphibian species and populations. The biological and socio-economic issues of non-native species control are examined and brief case studies of successful eradication programmes are provided.

Book chapter↗

USGS2018

Tools for managing hydrologic alteration on a regional scale II: Setting targets to protect stream health

Widespread hydrologic alteration creates a need for tools to assess ecological impacts to streams that can be applied across large geographic scales. A regional framework for biologically based flow management can help catchment managers prioritise streams for protection, evaluate impacts of disturbance or interventions and provide a starting point for causal assessment in degraded streams. However, lack of flow data limit the ability to assess hydrologic conditions across a region. Hydrologic models can address this problem. Regionally calibrated hydrologic models were used to estimate current and reference flows at 572 bioassessment sites in southern and central coastal California. Flow alteration was characterised as the difference in 39 flow metrics calculated from simulations of present‐day and reference flow time‐series, calculated under up to four precipitation conditions. Biological condition was assessed with the California Stream Condition Index (CSCI) and its components. Logistic regressions were used to predict the likelihood of high scores (i.e. ≥10th percentile of the CSCI reference calibration data). Statistically significant relationships between increasing severity of hydrologic alteration and decreasing biological condition were used to set thresholds that reflected tolerance for risk of a stakeholder advisory group. An index of hydrologic alteration was created by selecting flow metrics based on their importance for predicting biological response variables in boosted regression tree models. Metrics were selected in the order of decreasing importance, and no more than two metrics per metric class were selected (i.e. duration, frequency, magnitude, timing and variability). Seven metrics were selected: HighDur (duration of high‐flow events), HighNum (# of high‐flow events), NoDisturb (duration between high‐ or low‐flow events), MaxMonthQ (maximum monthly discharge), Q99 (99th percentile of daily streamflow), QmaxIDR (interdecile range of annual maxima) and RBI (Richards–Baker Index). Applying the index to data from a probabilistic survey, 34% of stream‐miles in southern California were estimated to be hydrologically altered. One of four management priorities were assigned to each site based on biological condition and hydrologic status: protection (healthy and unaltered, 52% of stream‐miles), monitoring (healthy but altered 4%), evaluation of flow management (unhealthy and altered, 30%) and evaluation of other management (unhealthy but unaltered, 14%). Regionally derived biologically based targets for flow alteration allow catchment managers to prioritise activities and conduct screenings for causal assessments across large spatial scales. Furthermore, regional tools pave the way for incorporation of hydrologic management in policies and catchment planning designed to support biological integrity in streams. Development of regional tools should be a priority where hydrologic alteration is pervasive or expected to increase in response to climate change or urbanisation.

Freshwater Biology↗

USGS2018

A full annual-cycle conservation strategy for Sprague’s Pipit, Chestnut-collared and McCown’s Longspurs, and Baird’s Sparrow

Sprague’s Pipit ( Anthus spragueii ), Chestnut-collared Longspur ( Calcarius ornatus ), McCown’s Longspur ( Rhynchophanes mccownii ), and Baird’s Sparrow ( Centronyx bairdii ) [hereafter, “the Species”] are North American grassland-obligate songbirds whose populations have experienced significant annual population declines and are the focus of increasing conservation concern. The purpose of this strategy is to summarize current knowledge of the Species and identify priority research, monitoring and conservation actions required to improve their population status. Grasslands are among the most threatened ecosystems in the world with historic losses of 61-70% converted to other land uses, primarily cropland agriculture. Losses continue, with current conversion in the northern Great Plains occurring several times faster than grasslands can be protected. The Partners in Flight North American Landbird Conservation Plan (PIF NALCP) estimates current global populations of 900,000, 3,000,000, 600,000, and 2,000,000 for Sprague’s Pipit, Chestnut-collared Longspur, McCown’s Longspur, and Baird’s Sparrow, respectively. Over the period of 1967-2015, these populations have declined at -3.1, -4.2, -5.9 and -2.2% annually for estimated total losses of 78, 87, 94 and 65%, respectively. Habitat associations of breeding birds, especially at the local scale, represent the majority of the existing scientific literature on the Species’ biology. Landscape-scale associations are more poorly understood, and few studies have linked habitat, at any scale, to population vital rates. Increasing effort is focused on nonbreeding season and very little is known about migration. Current knowledge identifies three primary threats: 1) loss of native grasslands, 2) degradation and fragmentation of remaining native grasslands, and 3) disturbance inconsistent with needs of the Species. Top priorities for future research include: identification of population limiting factors, links between breeding habitat and demographics, identification of migratory habitat requirements, and identification of conditions promoting winter survival. Implementation strategies must focus on the protection, restoration, and enhancement (i.e., management) of grassland communities. Most imperative is the protection of remaining native grasslands from conversion to other uses. Actions supporting grass-based agriculture on privately-owned, native grasslands are paramount. These include incentive-based tools to support livestock grazing that benefits both priority birds and healthy ranching communities, which in turn prevent the conversion of native grasslands to cropland. Where cropland conversion has already taken place, conservation partners should work to continue and improve programs such as the Conservation Reserve Program (CRP) to restore and maintain permanent native cover. This strategy adopts the PIF NALCP objective, which is to reduce the rate of the Species’ decline in the first 10 years, then stabilize and ultimately increase the 2016 population by 5-15% over the subsequent 20 years. Ongoing monitoring programs such as the Breeding Bird Survey, Integrated Monitoring of Bird Conservation Regions, and eBird are critical for informing broadscale demographic and geographic trends for the Species. However, to achieve PIF NALCP goals, there is additional need for monitoring that links habitat conservation accomplishments to population performance within a strategic habitat conservation framework.

Report↗

USGS2009

After the disaster: The hydrogeomorphic, ecological, and biological responses to the 1980 eruption of Mount St. Helens, Washington

The 1980 eruption of Mount St. Helens caused instantaneous landscape disturbance on a grand scale. On 18 May 1980, an ensemble of volcanic processes, including a debris avalanche, a directed pyroclastic density current, voluminous lahars, and widespread tephra fall, abruptly altered landscape hydrology and geomorphology, and created distinctive disturbance zones having varying impacts on regional biota. Response to the geological and ecological disturbances has been varied and complex. In general, eruption-induced alterations in landscape hydrology and geomorphology led to enhanced stormflow discharge and sediment transport. Although the hydrological response to landscape perturbation has diminished, enhanced sediment transport persists in some basins. In the nearly 30 years since the eruption, 350 million (metric) tons of suspended sediment has been delivered from the Toutle River watershed to the Cowlitz River (roughly 40 times the average annual preeruption suspended-sediment discharge of the Columbia River). Such prodigious sediment loading has wreaked considerable socioeconomic havoc, causing significant channel aggradation and loss of flood conveyance capacity. Significant and ongoing engineering efforts have been required to mitigate these problems. The overall biological evolution of the eruption-impacted landscape can be viewed in terms of a framework of survivor legacies. Despite appearances to the contrary, a surprising number of species survived the eruption, even in the most heavily devastated areas. With time, survivor “hotspots” have coalesced into larger patches, and have served as stepping stones for immigrant colonization. The importance of biological legacies will diminish with time, but the intertwined trajectories of geophysical and biological successions will influence the geological and biological responses to the 1980 eruption for decades to come.

Washington↗

USGS2020

Methylmercury exposure in wildlife: A review of the ecological and physiological processes affecting contaminant concentrations and their interpretation

Exposure to methylmercury (MeHg) can result in detrimental health effects in wildlife. With advances in ecological indicators and analytical techniques for measurement of MeHg in a variety of tissues, numerous processes have been identified that can influence MeHg concentrations in wildlife. This review presents a synthesis of theoretical principals and applied information for measuring MeHg exposure and interpreting MeHg concentrations in wildlife. Mercury concentrations in wildlife are the net result of ecological processes influencing dietary exposure combined with physiological processes that regulate assimilation, transformation, and elimination. Therefore, consideration of both physiological and ecological processes should be integrated when formulating biomonitoring strategies. Ecological indicators, particularly stable isotopes of carbon, nitrogen, and sulfur, compound-specific stable isotopes, and fatty acids, can be effective tools to evaluate dietary MeHg exposure. Animal species differ in their physiological capacity for MeHg elimination, and animal tissues can be inert or physiologically active, act as sites of storage, transformation, or excretion of MeHg, and vary in the timing of MeHg exposure they represent. Biological influences such as age, sex, maternal transfer, and growth or fasting are also relevant for interpretation of tissue MeHg concentrations. Wildlife tissues that represent current or near-term bioaccumulation and in which MeHg is the predominant mercury species (such as blood and eggs) are most effective for biomonitoring ecosystems and understanding landscape drivers of MeHg exposure. Further research is suggested to critically evaluate the use of keratinized external tissues to measure MeHg bioaccumulation, particularly for less-well studied wildlife such as reptiles and terrestrial mammals. Suggested methods are provided to effectively use wildlife for quantifying patterns and drivers of MeHg bioaccumulation over time and space, as well as for assessing the potential risk and toxicological effects of MeHg on wildlife.

Science of the Total Environment↗