Conservation of geographically disjunct large mammals. A review of bison: mating and conservation in small populations
No abstract available.
Zoo Biology↗
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Vertebrate species introductions in the United States and its territories
At least 1,065 introduced vertebrate species have been introduced in the United States and its territories, including at least 86 mammalian, 127 avian, 179 reptilian/amphibian, and 673 fish species. Examples in each major taxonomic group include domestic cat, small Indian mongoose, red fox, goat, pig, rabbit, rats, house mouse, gray squirrel, nutria, starling, Indian common myna, red-vented bulbul, brown treesnake, red-eared slider, brown trout, tilapia, and grass carp. We briefly review some of these species and the types of damage they cause. We then review the basic types of methods used for control or eradication of each taxonomic group, including physical, chemical, biological, and cultural methods. We discuss some of the challenges in managing these species, including issues with the use of toxicants, land access, public attitudes, and monitoring difficulties. Finally, we list some ongoing research and future research needs, including improved detection methods, improved attractants, improved barriers, improved capture methods, fertility control, and risk assessment methods.
Current Zoology↗
Diverse portfolios: Investing in tributaries for restoration of large river fishes in the Anthropocene
Rehabilitation of large Anthropocene rivers requires engagement of diverse stakeholders across a broad range of sociopolitical boundaries. Competing objectives often constrain options for ecological restoration of large rivers whereas fewer competing objectives may exist in a subset of tributaries. Further, tributaries contribute toward building a “portfolio” of river ecosystem assets through physical and biological processes that may present opportunities to enhance the resilience of large river fishes. Our goal is to review roles of tributaries in enhancing mainstem large river fish populations. We present case histories from two greatly altered and distinct large-river tributary systems that highlight how tributaries contribute four portfolio assets to support large-river fish populations: 1) habitat diversity, 2) connectivity, 3) ecological asynchrony, and 4) density-dependent processes. Finally, we identify future research directions to advance our understanding of tributary roles and inform conservation actions. In the Missouri River United States, we focus on conservation efforts for the state endangered lake sturgeon, which inhabits large rivers and tributaries in the Midwest and Eastern United States. In the Colorado River, Grand Canyon United States, we focus on conservation efforts for recovery of the federally threatened humpback chub. In the Missouri River, habitat diversity focused on physical habitats such as substrate for reproduction, and deep-water habitats for refuge, whereas augmenting habitat diversity for Colorado River fishes focused on managing populations in tributaries with minimally impaired thermal and flow regimes. Connectivity enhancements in the Missouri River focused on increasing habitat accessibility that may require removal of physical structures like low-head dams; whereas in the Colorado River, the lack of connectivity may benefit native fishes as the disconnection provides refuge from non-native fish predation. Hydrologic variability among tributaries was present in both systems, likely underscoring ecological asynchrony. These case studies also described density dependent processes that could influence success of restoration actions. Although actions to restore populations varied by river system, these examples show that these four portfolio assets can help guide restoration activities across a diverse range of mainstem rivers and their tributaries. Using these assets as a guide, we suggest these can be transferable to other large river-tributary systems.
Frontiers in Environmental Science↗
[Book review] The birds of San Diego County
San Diego County, California is larger in area than 2 of the 50 states (combined), its geographic (and thus biological) diversity ranges from the seacoast across mountains of nearly 2,000 m elevation to extreme desert, it is the southwesternmost county of the contiguous U.S., and it is inhabited by dedicated birders whose observations have boosted the county list to more than 450 species. "The Birds of San Diego County" provides detailed information on the geographic, ecological, and temporal distribution and abundance of each of the 449 species of native birds reported in the county-for some, by subspecies. Maps of breeding distribution are presented for 129 of the 181 breeding species (of which 26 are considered to be extirpated or only occasional breeders). Ecological zones and terms of abundance are defined precisely, and the definitions are adhered to. Welcomely absent are long para- graphs of descriptive and generalized information.
The Auk↗
Model description and evaluation of the mark-recapture survival model used to parameterize the 2012 status and threats analysis for the Florida manatee ( Trichechus manatus latirostris )
This report provides supporting details and evidence for the rationale, validity and efficacy of a new mark-recapture model, the Barker Robust Design, to estimate regional manatee survival rates used to parameterize several components of the 2012 version of the Manatee Core Biological Model (CBM) and Threats Analysis (TA). The CBM and TA provide scientific analyses on population viability of the Florida manatee subspecies ( Trichechus manatus latirostris ) for U.S. Fish and Wildlife Service’s 5-year reviews of the status of the species as listed under the Endangered Species Act. The model evaluation is presented in a standardized reporting framework, modified from the TRACE (TRAnsparent and Comprehensive model Evaluation) protocol first introduced for environmental threat analyses. We identify this new protocol as TRACE-MANATEE SURVIVAL and this model evaluation specifically as TRACE-MANATEE SURVIVAL, Barker RD version 1. The longer-term objectives of the manatee standard reporting format are to (1) communicate to resource managers consistent evaluation information over sequential modeling efforts; (2) build understanding and expertise on the structure and function of the models; (3) document changes in model structures and applications in response to evolving management objectives, new biological and ecological knowledge, and new statistical advances; and (4) provide greater transparency for management and research review.
Open-File Report↗
Vectors, hosts, and control measures for Zika virus in the Americas
We examine Zika virus (ZIKV) from an ecological perspective and with a focus on the Americas. We assess (1) the role of wildlife in ZIKV disease ecology, (2) how mosquito behavior and biology influence disease dynamics, and (3) how nontarget species and ecosystems may be impacted by vector control programs. Our review suggests that free-ranging, non-human primates may be involved in ZIKV transmission in the Old World; however, other wildlife species likely play a limited role in maintaining or transmitting ZIKV. In the Americas, a zoonotic cycle has not yet been definitively established. Understanding behaviors and habitat tolerances of Aedes aegypti and Aedes albopictus , two ZIKV competent vectors in the Americas, will allow more accurate modeling of disease spread and facilitate targeted and effective control efforts. Vector control efforts may have direct and indirect impacts to wildlife, particularly invertebrate feeding species; however, strategies could be implemented to limit detrimental ecological effects.
EcoHealth↗
Recent advances in detection and control of infectious hematopoietic necrosis virus in aquaculture
Infectious hematopoietic necrosis (IHN) is one of the most important viral diseases of salmon and trout reared in culture. The disease remains untreatable with avoidance being the only control measure. Much has been learned about the chemical, physical, and serological characteristics of the rhabdovirus causing IHN, but critical gaps exist in our understanding of the biology of the virus in nature. The tools of molecular biology have provided improved methods for detection of pathogens and new strategies for control of viral diseases. This paper reviews several recent improvements in methods for detecting infectious hematopoietic necrosis virus including the application of enzyme-linked immunosorbent assays, development of monoclonal antibodies and DNA probes, and use of the polymerase chain reaction. New strategies for control of IHN through the use of better water treatment, more resistant fish, antiviral drugs or chemicals, and new generation vaccines are discussed.
Annual Review of Fish Diseases↗
Mathematical modeling relevant to closed artificial ecosystems
The mathematical modeling of ecosystems has contributed much to the understanding of the dynamics of such systems. Ecosystems can include not only the natural variety, but also artificial systems designed and controlled by humans. These can range from agricultural systems and activated sludge plants, down to mesocosms, microcosms, and aquaria, which may have practical or research applications. Some purposes may require the design of systems that are completely closed, as far as material cycling is concerned. In all cases, mathematical modeling can help not only to understand the dynamics of the system, but also to design methods of control to keep the system operating in desired ranges. This paper reviews mathematical modeling relevant to the simulation and control of closed or semi-closed artificial ecosystems designed for biological production and recycling in applications in space. Published by Elsevier Science Ltd on behalf of COSPAR.
Advances in Space Research↗
A review on cylindrospermopsin: the global occurrence, detection, toxicity and degradation of a potent cyanotoxin
Cylindrospermopsin is an important cyanobacterial toxin found in water bodies worldwide. The ever-increasing and global occurrence of massive and prolonged blooms of cylindrospermopsin-producing cyanobacteria poses a potential threat to both human and ecosystem health. Its toxicity is associated with metabolic activation and may involve mechanisms that adversely affect a wide variety of targets in an organism. Cylindrospermopsin has been shown to be cytotoxic, dermatotoxic, genotoxic, hepatotoxic in vivo, developmentally toxic, and may be carcinogenic. Human exposure may occur through drinking water, during recreational activities and by consuming foods in which the toxin may have bioaccumulated. Drinking water shortages of sufficient quality coupled with growing human pressures and climate variability and change necessitate an integrated and sustainable water management program. This review presents an overview of the importance of cylindrospermopsin, its detection, toxicity, worldwide distribution, and lastly, its chemical and biological degradation and removal by natural processes and drinking water treatment processes.
Environmental Science: Processes and Impacts↗
Causes, responses, and implications of anthropogenic versus natural flow intermittence in river networks
Rivers that do not flow year-round are the predominant type of running waters on Earth. Despite a burgeoning literature on natural flow intermittence (NFI), knowledge about the hydrological causes and ecological effects of human-induced, anthropogenic flow intermittence (AFI) remains limited. NFI and AFI could generate contrasting hydrological and biological responses in rivers because of distinct underlying causes of drying and evolutionary adaptations of their biota. We first review the causes of AFI and show how different anthropogenic drivers alter the timing, frequency and duration of drying, compared with NFI. Second, we evaluate the possible differences in biodiversity responses, ecological functions, and ecosystem services between NFI and AFI. Last, we outline knowledge gaps and management needs related to AFI. Because of the distinct hydrologic characteristics and ecological impacts of AFI, ignoring the distinction between NFI and AFI could undermine management of intermittent rivers and ephemeral streams and exacerbate risks to the ecosystems and societies downstream.
BioScience↗
Evaluation of the effects of turbulence on the behaviour of migratory fish
The fundamental influence of fluid dynamics on aquatic organisms is receiving increasing attention among aquatic ecologists. For example, the importance of turbulence to ocean plankton has long been a subject of investigation (Peters and Redondo 1997). More recently, studies have begun to emerge that explicitly consider the effects of shear and turbulence on freshwater invertebrates (Statzner et al. 1988; Hart et al. 1996) and fishes (Pavlov et al. 1994, 1995). Hydraulic shear stress and turbulence are interdependent natural hydraulic phenomena that are important to fish, and consequently it is important to develop an understanding of how fish sense, react to, and perhaps utilize these phenomena under normal river flows. The appropriate reaction to turbulence may promote movement of migratory fish (Coutant 1998) or prevent displacement of resident fish. It has been suggested that one of the adverse effects of flow regulation by hydroelectric projects is the reduction of normal turbulence, particularly in the headwaters of reservoirs, which can lead to disorientation and slowing of migration (Williams et al. 1996; Coutant et al. 1997; Coutant 1998). On the other hand, greatly elevated levels of shear and turbulence may be injurious to fish; injuries can range from removal of the mucous layer on the body surface to descaling to torn opercula, popped eyes, and decapitation (Neitzel et al. 2000a,b). Damaging levels of fluid stress, such turbulence, can occur in a variety of circumstances in both natural and man-made environments. This report discusses the effects of shear stress and turbulence on fish, with an emphasis on potentially damaging levels in man-made environments. It defines these phenomena, describes studies that have been conducted to understand their effects, and identifies gaps in our knowledge. In particular, this report reviews the available information on the levels of turbulence that can occur within hydroelectric power plants, and the associated biological effects. Furthermore, this report describes an experimental apparatus designed to test the effect of turbulence on fish, and defines its hydraulics. It gives the results of experiments in which three different fish species were exposed to representative levels of turbulence in the laboratory.
Bonneville Power Administration Report↗
Wetland restoration in the Prairie Pothole Region of North America: A literature review
The landscape of the prairie pothole region (PPR), a grassland biome of the northern U.S. Great Plains and parts of Canada, has been greatly altered by land use since the 1800's. Conversion of grassland to cropland and drainage of wetlands has resulted in wetland losses of up to 90% in some areas. Besides the area providing critical habitat to various wildlife, breeding waterfowl, and migratory birds, its seasonal wetlands support diverse plant and invertebrate communities, play a role in flood attenuation, act as traps for nutrients. store and recharge groundwater. and are valued recreational lands. Most of the restoration of prairie potholes has only occurred since the 1980's, with few follow-up studies performed and little postrestoration monitoring of these restorations. Monitoring and research of wetland restoration in the PPR is less common relative to the number of postrestoration studies done on other wetland types in the United States. This report is a synthesis of current knowledge of restored prairie pothole wetlands and makes suggestions for future wetland restoration-related research. In order to determine the benefits of restored wetlands, it is important to better understand how closely restored wetlands in the PPR resemble their natural analogues in terms of functions and values. The report categorizes PPR literature into five general sections: wildlife, vegetation, invertebrates, fish, and physical and chemical characteristics of restored wetlands. Each of these five sections has a summary of research and is divided into two parts: an overview of research and findings and regional case studies. Most PPR studies have focused on bird and plant communities, whereas research done on the functions of restored wetlands and studies concerning less visible fauna and physical and chemical characteristics are scarce. In addition, there is a scarcity of research in the western and northern portions or the PPR; most studio to date have been conducted in Iowa. Minnesota, or South Dakota. Key Words: wetland restoration, prairie pothole region, PPR, literature review, wetland functions and values. postrestoration studies
Biological Science Report↗
Pathogenic human viruses in coastal waters
This review addresses both historical and recent investigations into viral contamination of marine waters. With the relatively recent emergence of molecular biology-based assays, a number of investigations have shown that pathogenic viruses are prevalent in marine waters being impacted by sewage. Research has shown that this group of fecal-oral viral pathogens (enteroviruses, hepatitis A viruses, Norwalk viruses, reoviruses, adenoviruses, rotaviruses, etc.) can cause a broad range of asymptomatic to severe gastrointestinal, respiratory, and eye, nose, ear, and skin infections in people exposed through recreational use of the water. The viruses and the nucleic acid signature survive for an extended period in the marine environment. One of the primary concerns of public health officials is the relationship between the presence of pathogens and the recreational risk to human health in polluted marine environments. While a number of studies have attempted to address this issue, the relationship is still poorly understood. A contributing factor to our lack of progress in the field has been the lack of sensitive methods to detect the broad range of both bacterial and viral pathogens. The application of new and advanced molecular methods will continue to contribute to our current state of knowledge in this emerging and
Clinical Microbiology Reviews↗
Ecosystem services of riparian restoration: A review of rock detention structures in the Madrean Archipelago Ecoregion
In northwestern Mexico and the southwestern United States, limited water supplies and fragile landscapes jeopardize world-renowned biological diversity. Simple rock detention structures have been used to manage agricultural water for over a thousand years and are now being installed to restore ecohydrological functionality but with little scientific evidence of their success. The impacts, design, and construction of such structures has been debated among local restoration practitioners, management, and permitting agencies. This article presents archeological documentation, local contentions, and examples of available research assessments of rock detention structures in the Madrean Archipelago Ecoregion. A US Geological Survey study to quantify impacts of rock detention structures using remote-sensing analyses, hydrologic monitoring, vegetation surveys, and watershed modeling is discussed, and results rendered in terms of the critical restoration ecosystem services provided. This framework provides a means for comparing management actions that might directly or indirectly impact human populations and assessing tradeoffs between them.
Arizona, Chihuahua, New Mexico, Sonora↗
Management concerns about known and potential impacts of lead use in shooting and in fishing activities
We present a summary of the technical review, jointly requested by the American Fisheries Society and The Wildlife Society, addressing the hazards to wildlife resulting from lead objects or fragments introduced into aquatic and terrestrial environments from the use of ammunition and fishing tackle. Impacts from lead are well documented in humans, as well as in terrestrial and aquatic organisms. Concern about impacts from lead ammunition and fishing tackle has resulted in the development of non-lead alternatives, educational campaigns, and regulations to restrict their use. This article discusses the general biological impacts of lead exposure from fishing and shooting activities to fish, wildlife, and humans; summarizes existing and proposed regulations to reduce lead exposure to biota; reviews alternatives to lead materials that are currently available for fishing; and outlines options for further actions to reduce wildlife and human exposure to lead from fishing activities.
Fisheries↗
Genetic analysis of North American Phragmites australis guides management approaches
Phragmites australis subsp. australis is an invasive and ecologically detrimental plant in multiple regions of North America. Its co-occurrence with the native subspecies, and multiple instances of hybridization, has created the need to differentiate Phragmites subspecies or haplotypes so that management can be appropriately targeted to the invader. We compiled a review of current genetic discrimination methods among the three Phragmites subspecies inhabiting the United States and Canada, and discussed how each method can contribute to control of the introduced subspecies while preserving the two endemic subspecies. We also discussed various control tools and the implications of Phragmites genetics for implementation. The Phragmites subspecies endemic to North America have environmental or infrastructure significance (e.g., habitat sustainability, biodiversity, storm surge and erosion protection). Thus, faster and more accurate differentiation among the endemic and introduced subspecies is needed. Additionally, more in-depth genetic information on Phragmites subspecies could support better management decisions, as well as the development of improved control treatments. This review highlights technologies and approaches currently available for genetic identification, recently collected genomic, transcriptomic and proteomic information, and implications for biological control and herbicide treatments.
Aquatic Botany↗
Conservation status of freshwater gastropods of Canada and the United States
This is the first American Fisheries Society conservation assessment of freshwater gastropods (snails) from Canada and the United States by the Gastropod Subcommittee (Endangered Species Committee). This review covers 703 species representing 16 families and 93 genera, of which 67 species are considered extinct, or possibly extinct, 278 are endangered, 102 are threatened, 73 are vulnerable, 157 are currently stable, and 26 species have uncertain taxonomic status. Of the entire fauna, 74% of gastropods are imperiled (vulnerable, threatened, endangered) or extinct, which exceeds imperilment levels in fishes (39%) and crayfishes (48%) but is similar to that of mussels (72%). Comparison of modern to background extinction rates reveals that gastropods have the highest modern extinction rate yet observed, 9,539 times greater than background rates. Gastropods are highly susceptible to habitat loss and degradation, particularly narrow endemics restricted to a single spring or short stream reaches. Compilation of this review was hampered by a paucity of current distributional information and taxonomic uncertainties. Although research on several fronts including basic biology, physiology, conservation strategies, life history, and ecology are needed, systematics and curation of museum collections and databases coupled with comprehensive status surveys (geographic limits, threat identification) are priorities.
Fisheries↗
Science and the storms: The USGS response to the hurricanes of 2005
This report is designed to give a view of the immediate response of the U.S. Geological Survey (USGS) to four major hurricanes of 2005: Dennis, Katrina, Rita, and Wilma. Some of this response took place days after the hurricanes; other responses included fieldwork and analysis through the spring. While hurricane science continues within the USGS, this overview of work following these hurricanes reveals how a Department of the Interior bureau quickly brought together a diverse array of its scientists and technologies to assess and analyze many hurricane effects. Topics vary from flooding and water quality to landscape and ecosystem impacts, from geotechnical reconnaissance to analyzing the collapse of bridges and estimating the volume of debris. Thus, the purpose of this report is to inform the American people of the USGS science that is available and ongoing in regard to hurricanes. It is the hope that such science will help inform the decisions of those citizens and officials tasked with coastal restoration and planning for future hurricanes. Chapter 1 is an essay establishing the need for science in building a resilient coast. The second chapter includes some hurricane facts that provide hurricane terminology, history, and maps of the four hurricanes’ paths. Chapters that follow give the scientific response of USGS to the storms. Both English and metric measurements are used in the articles in anticipation of both general and scientific audiences in the United States and elsewhere. Chapter 8 is a compilation of relevant ongoing and future hurricane work. The epilogue marks the 2-year anniversary of Hurricane Katrina. An index of authors follows the report to aid in finding articles that are cross-referenced within the report. In addition to performing the science needed to understand the effects of hurricanes, USGS employees helped in the rescue of citizens by boat and through technology by “geoaddressing” 911 calls after Katrina and Rita so that other rescuers could find persons trapped in attics and porches. They also delivered food and water to residents stranded along the lower Mississippi River for several days. That work is reported in chapter 3 of this volume. A great number of scientists contributed to this peer-reviewed report designed for a general audience. Because they work for USGS—an unbiased, multidisciplinary science organization that focuses on biology, geography, geology, geospatial information, and water—they are dedicated to the timely, relevant, and impartial study of the landscape and natural resources of the Nation, as well as natural hazards, like hurricanes, that threaten the Nation. To learn more about their work, visit the USGS Web site (www.usgs.gov).
Circular↗