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USGS2017

A Bayesian-based system to assess wave-driven flooding hazards on coral reef-lined coasts

Many low-elevation, coral reef-lined, tropical coasts are vulnerable to the effects of climate change, sea level rise, and wave-induced flooding. The considerable morphological diversity of these coasts and the variability of the hydrodynamic forcing that they are exposed to make predicting wave-induced flooding a challenge. A process-based wave-resolving hydrodynamic model (XBeach Non-Hydrostatic, “XBNH”) was used to create a large synthetic database for use in a “Bayesian Estimator for Wave Attack in Reef Environments” (BEWARE), relating incident hydrodynamics and coral reef geomorphology to coastal flooding hazards on reef-lined coasts. Building on previous work, BEWARE improves system understanding of reef hydrodynamics by examining the intrinsic reef and extrinsic forcing factors controlling runup and flooding on reef-lined coasts. The Bayesian estimator has high predictive skill for the XBNH model outputs that are flooding indicators, and was validated for a number of available field cases. It was found that, in order to accurately predict flooding hazards, water depth over the reef flat, incident wave conditions, and reef flat width are the most essential factors, whereas other factors such as beach slope and bed friction due to the presence or absence of corals are less important. BEWARE is a potentially powerful tool for use in early warning systems or risk assessment studies, and can be used to make projections about how wave-induced flooding on coral reef-lined coasts may change due to climate change.

Journal of Geophysical Research C: Oceans↗

USGS1995

Screening tests for assessing the anaerobic biodegradation of pollutant chemicals in subsurface environments

Screening methods were developed to assess the susceptibility of ground water contaminants to anaerobic biodegradation. One method was an extrapolation of a procedure previously used to measure biodegradation activity in dilute sewage sludge. Aquifer solids and ground water with no additional nutritive media were incubated anaerobically in 160-ml serum bottles containing 250 mg·l −1 carbon of the substrate of interest. This method relied on the detection of gas pressure or methane production in substrateamended microcosms relative to background controls. Other screening procedures involved the consumption of stoichiometrically required amounts of sulfate or nitrate from the same type of incubations. Close agreement was obtained between the measured and calculated amounts of substrate bioconversion based on the measured biogas pressure in methanogenic microcosms. Storage of the microcosms for up to 6 months did not adversely influence the onset or rate of benzoic acid mineralization. The lower detection limits of the methanogenic assay were found to be a function of the size of the microcosm headspace, the mean oxidation state of the substrate carbon, and the method used to correct for background temperature fluctuations. Using these simple screening procedures, biodegradation information of regulatory interest could be generated, including, (i) the length of the adaptation period, (ii) the rate of substrate decay and (iii) the completeness of the bioconversion.

Journal of Microbiological Methods↗

USGS2019

Manufacturing simple and inexpensive soil surface temperature and gravimetric water content sensors

Quantifying temperature and moisture at the soil surface is essential for understanding how soil surface biota respond to changes in the environment. However, at the soil surface these variables are highly dynamic and standard sensors do not explicitly measure temperature or moisture in the upper few millimeters of the soil profile. This paper describes methods for manufacturing simple, inexpensive sensors that simultaneously measure the temperature and moisture of the upper 5 mm of the soil surface. In addition to sensor construction, steps for quality control, as well as for calibration for various substrates, are explained. The sensors incorporate a Type E thermocouple to measure temperature and assess soil moisture by measuring the resistance between two gold-plated metal probes at the end of the sensor at a depth of 5 mm. The methods presented here can be altered to customize probes for different depths or substrates. These sensors have been effective in a variety of environments and have endured months of heavy rains in tropical forests as well as intense solar radiation in deserts of the southwestern U.S. Results demonstrate the effectiveness of these sensors for evaluating warming, drying, and freezing of the soil surface in a global change experiment.

Journal of Visualized Experiments↗

USGS2022

The gap between experts, farmers and non-farmers on perceived environmental vulnerability and the influence of values and beliefs

Science has played a mixed role in guiding conservation and sustainability-oriented decision-making by individuals, policymakers, institutions, and governments. Not all science-based conservation and sustainability initiatives that address issues facing humanity and ecosystems and global problems have gained public support. Conservation decisions and policy prescriptions are and may be based on perceptions about and experiences with the environment, local land use, and ecosystems that may not align with or be grounded in science or evidence from experts in the field. Values, beliefs, and perceptions associated with nature play a critical role in how individuals view biodiversity conservation, sustainability, and natural resource management . This study first examines the gap between experts (scientists and other field experts) and the public (farmers and non-farmers) about the state of water and land resources, wildlife and associated habitats, and aquatic biodiversity in the Smoky Hill River Watershed in western Kansas. Second, the study examines the role that values and beliefs play in shaping environmental perceptions for farmers and non-farmers. Analysis confirms that a gap between experts and farmers/non-farmers does exist, especially with respect to the state of the Ogallala Aquifer, playas, rivers and streams, lakes and reservoirs, native grasslands, wildlife habitats, farmland, native fish populations, and wildlife species. Ordered-logistic regression analyses, meanwhile, indicate that farmer and non-farmer perceptions about the state of the local environment are influenced by traditional and self-interested values, as well as environmental values and beliefs, but less so by religiosity and political ideology. Despite broad takeaways, results exhibited heterogeneity across the farmer and non-farmer subpopulations. If environmental professionals cannot align ecological data, stakeholders’ values/perceptions, and policies, then the existing body of technical research and management on sustainability in natural and social sciences may be of little value.

Journal of Environmental Management↗

USGS2013

Floral ecology and insect visitation in riparian Tamarix sp. (saltcedar)

Climate change projections for semiarid and arid North America include reductions in stream discharge that could adversely affect riparian plant species dependent on stream-derived ground water. In order to better understand this potential impact, we used a space-for-time substitution to test the hypotheses that increasing depth-to-groundwater (DGW) is inversely related to Tamarix sp. (saltcedar) flower abundance (F) and nectar production per flower (N). We also assessed whether DGW affected the richness or abundance of insects visiting flowers. We examined Tamarix floral attributes and insect visitation patterns during 2010 and 2011 at three locations along a deep DWG gradient (3.2–4.1 m) on a floodplain terrace adjacent to Las Vegas Wash, an effluent-dominated Mojave Desert stream. Flower abundance and insect visitation patterns differed between years, but no effect from DGW on either F or N was detected. An eruption of a novel non-native herbivore, the splendid tamarisk weevil (Coniatus splendidulus), likely reduced flower production in 2011.

Journal of Arid Environments↗

USGS2022

Typology development of earthquake displays in free-choice learning environments, to inform earthquake early warning education in the United States

Free-choice learning environments, such as museums, national parks, interpretive trails, and visitor centers, are trusted sources of information in their communities and support lifelong learning. Earthquake education in these spaces creates awareness of earthquake hazards and risk in areas where people live or visit and, in turn, may increase engagement in preparedness behavior. The ShakeAlert® Earthquake Early Warning System helps publics prepare by warning in advance of shaking from significant earthquakes along the West Coast of the United States. ShakeAlert can minimize earthquake damage by prompting automated actions (e.g., slowing trains, shutting off water valves) and prompting personal protective actions like “Drop, Cover, and Hold On” to significantly reduce damage, injury, and loss of life. Individuals and communities must have a basic understanding of earthquake hazards, as well as an awareness of ShakeAlert technology, to know how to respond if they feel shaking or receive an alert. Currently, there is a lack of contemporary scholarship on how free-choice learning environments approach earthquake education through exhibits and displays. We analyzed a sample of existing earthquake exhibits and their themes in the United States and explored how different display types are uniquely engaging. We found that most displays did not include information about how to prepare for an earthquake or associated protective actions. From this and the development of the typology, our research posits a foundational framework for how best to incorporate place-based learning on earthquakes and early warning into centers of free-choice learning which may apply to a range of other natural hazards and will enhance public awareness and safety.

International Journal of Disaster Risk Reduction↗

USGS2004

Scientific advances provide opportunities to improve pediatric environmental health

The health consequences of contaminants in the environment, with respect to the health of children and infants, recently have been dramatically brought to public attention by the motion pictures Erin Brockovich and A Civil Action . These productions focused public attention on the potential link between water contaminants and pediatric health, a continuing subject of public concern. As a consequence of the increasing production of new commercial chemicals, many chemicals have appeared in the scientific and public awareness as potential threats to health. These new or novel compounds eventually distribute in the environment and often are termed emerging contaminants . Gitterman and Bearer stated, "Children may serve as unwitting sentinels for society; they are often the youngest exposed to many environmental toxicants and may become the youngest in age to manifest adverse responses." The discipline of pediatric environmental health is still in its adolescence, but it will be increasingly important as new chemicals are generated and as more is learned about the health effects of chemicals already in commerce. Here, we provide an overview of recent advances in biomonitoring and environmental monitoring of environmental contaminants including emerging contaminants. Our purpose in writing this commentary is to make pediatricians aware of the current resources available for learning about pediatric environmental health and of ongoing research initiatives that provide opportunities to improve pediatric environmental health.

Journal of Pediatrics↗

USGS2020

Recognition of typical antibiotic residues in environmental media related to groundwater in China (2009−2019)

The potential adverse environmental and health-related impacts of antibiotics are becoming more and more concerning. China is globally the largest antibiotic producer and consumer, possibly resulting in the ubiquity and high detection levels of antibiotics in environmental compartments. Clear status on the concentration levels and spatial distribution of antibiotic contamination in China's environment is necessary to gain insight into the establishment of legal and regulatory frameworks. This study collects information from over 170 papers reporting the occurrence and distribution of antibiotics in China's environment. A total of 110 antibiotics were detected, and 28 priority antibiotics were ubiquitous in China in almost all compartments of the environment, excluding the atmosphere. Seven dominant antibiotics in all environment compartments were identified by cluster analysis, including tetracycline, oxytetracycline, chlortetracycline, ofloxacin, enrofloxacin, norfloxacin, and ciprofloxacin. Meanwhile, sulfamethoxazole, sulfadiazine, and sulfamethazine were also frequently found in aqueous phases. Among the main basins where antibiotics were detected, the Haihe River Basin had higher median antibiotic concentrations in surface water compared to other basins, while the Huaihe River Basin had higher median concentrations in sediment. The median values of antibiotic concentrations in the sources were as follows: animal manure, 39 μg/kg (microgram per kilogram); WWTP (wastewater treatment plant) sludge, 39 μg/kg; animal wastewater, 156 ng/L (nanogram per liter); WWTP effluent: 15 ng/L. These concentrations are 1 − 2 orders of magnitude higher than that of the receptors (soil, 2.1 μg/kg; sediment, 4.7 μg/kg; surface water, 8.1 ng/L; groundwater, 2.9 ng/L), whether in solid or aqueous phases. Based on the number of detected antibiotics in various environmental compartments, animal farms and WWTPs are the main sources of antibiotics, and surface water and sediment are the main receptors of antibiotics. Hierarchical clustering identified the two main pathways of antibiotic transfer in various environmental compartments, which are from animal wastewater/WWTP effluent to surface water/sediment and from animal manure/WWTP sludge to soil/groundwater.

Journal of Hazardous Materials↗

USGS2026

Development of a SWAT+ model to improve conservation practice efficacy for protecting stream health in karst pasturelands

Placing appropriate conservation practices in critical source areas of pollutants can benefit stream health in karst environments susceptible to agricultural pollution. Watershed models, such as the Soil and Water Assessment Tool+ (SWAT+), can optimize both practice selection and placement across the landscape, but to our knowledge no studies have tested this model in karst pasturelands. Our goal was to understand pollutant dynamics in pasturelands with karst topography in southwest Virginia, United States. We built a SWAT+ model to predict streamflow and pollutant loads for four watersheds. SWAT+ predicted that streamflow estimates were most affected by setting the available water capacity to zero and increasing the hydraulic conductivity of the soil, revealing that water, and associated pollutants, move primarily through subsurface pathways. Predicted sediment yield was negatively associated with agricultural land cover and was strongly influenced by channel erodibility—indicating that the predominant sediment source may be streambanks. Therefore, practices that stabilize stream banks (e.g., fencing cattle out of streams) may be most effective at reducing sediment loads. The model unsatisfactorily predicted total nitrogen and total phosphorus loads. The utility of SWAT+ for cattle grazing operations in karst regions could be improved by more accurately representing the effects of cattle grazing on streambank erosion and the dynamic subsurface movement of pollutants.

Virginia↗

USGS2021

Environmental conditions associated with occurrences of the threatened Yaqui Catfish in the Yaqui River Basin, Mexico

The Yaqui Catfish Ictalurus pricei is an understudied species, with limited information available on its ecology, distribution, and local habitat use. Native to the southwestern United States and northwestern Mexico, Yaqui Catfish populations are declining, which has prompted listing of the species as threatened in the United States and as a species of concern in Mexico. Water overallocation, habitat degradation, invasive species introductions, and hybridization with nonnative Channel Catfish I . punctatus have caused the populations in Mexico to decline. The United States population collapsed after years of low recruitment. To better focus conservation efforts as well as define habitat associated with Yaqui Catfish occurrences, we assessed the distribution in the Yaqui River basin of Mexico by using historical data at a landscape scale. Yaqui Catfish were historically found across the watershed among a diversity of environments but were most frequently associated with small, intermittent streams. Basin land cover was dominated by forest, shrubland, and grassland, and Yaqui Catfish generally occurred in stream segments at similar proportions. However, a small number of Yaqui Catfish occurrences were associated with urban and cropland land cover types in proportions greater than the availability of those categories on the landscape. With the species facing declines in the region, this work will help to inform future conservation efforts aimed at securing the Yaqui Catfish, protecting suitable habitat, and better defining its current status in Mexico.

Yaqui River Basin↗

USGS2006

Erosion rates at the Mars Exploration Rover landing sites and long-term climate change on Mars

Erosion rates derived from the Gusev cratered plains and the erosion of weak sulfates by saltating sand at Meridiani Planum are so slow that they argue that the present dry and desiccating environment has persisted since the Early Hesperian. In contrast, sedimentary rocks at Meridiani formed in the presence of groundwater and occasional surface water, and many Columbia Hills rocks at Gusev underwent aqueous alteration during the Late Noachian, approximately coeval with a wide variety of geomorphic indicators that indicate a wetter and likely warmer environment. Two-toned rocks, elevated ventifacts, and perched and undercut rocks indicate localized deflation of the Gusev plains and deposition of an equivalent amount of sediment into craters to form hollows, suggesting average erosion rates of ???0.03 nm/yr. Erosion of Hesperian craters, modification of Late Amazonian craters, and the concentration of hematite concretions in the soils of Meridiani yield slightly higher average erosion rates of 1-10 nm/yr in the Amazonian. These erosion rates are 2-5 orders of magnitude lower than the slowest continental denudation rates on Earth, indicating that liquid water was not an active erosional agent. Erosion rates for Meridiani just before deposition of the sulfate-rich sediments and other eroded Noachian areas are comparable with slow denudation rates on Earth that are dominated by liquid water. Available data suggest the climate change at the landing sites from wet and likely warm to dry and desiccating occurred sometime between the Late Noachian and the beginning of the Late Hesperian (3.7-3.5 Ga). Copyright 2006 by the American Geophysical Union.

Journal of Geophysical Research E: Planets↗

USGS1979

Hydraulic potential in Lake Michigan bottom sediments

The magnitude and direction of groundwater flux in the bottom sediments of Lake Michigan were deduced from measurements made during three shipboard cruises between 1973 and 1975. These factors affect the geochemical environment of the sediments and therefore the distribution of trace elements reported to be present. The near-shore, sandy-bottom and fine-grained, soft, deep-lake sediments were investigated; areas of hard till or bedrock were not included in the study. Thirty-three piezometers were placed in near-shore sands in waters 5-15 m deep. The piezometers were placed an average of 3 m into the bottom sediment. Water levels from the piezometers averaged 0.6 cm above the lake level, equivalent to an upward hydraulic gradient of about 0.002 cm/cm. Water samples taken from the piezometers have a distinctly different chemical composition from that of the lake water. The total dissolved mineral content and hardness of the groundwater are about twice those of the lake water. Twenty-two hydraulic gradient measurements were made in the fine-grained soft deep-lake sediments in waters 48-140 m deep by using a differential-pressure transducer dropped into the sediments. These measurements show an upward gradient averaging 0.2 cm/cm. No chemical data were obtained for the groundwater in the deep-lake sediments. The results of this study indicate that the groundwater flux is upward through the bottom sediments into Lake Michigan and that there is a chemical change in the water near the water-sediment contact.

Lake Michigan↗

USGS2014

Beach science in the Great Lakes

Monitoring beach waters for human health has led to an increase and evolution of science in the Great Lakes, which includes microbiology, limnology, hydrology, meteorology, epidemiology, and metagenomics, among others. In recent years, concerns over the accuracy of water quality standards at protecting human health have led to a significant interest in understanding the risk associated with water contact in both freshwater and marine environments. Historically, surface waters have been monitored for fecal indicator bacteria (fecal coliforms, Escherichia coli , enterococci), but shortcomings of the analytical test (lengthy assay) have resulted in a re-focusing of scientific efforts to improve public health protection. Research has led to the discovery of widespread populations of fecal indicator bacteria present in natural habitats such as soils, beach sand, and stranded algae. Microbial source tracking has been used to identify the source of these bacteria and subsequently assess their impact on human health. As a result of many findings, attempts have been made to improve monitoring efficiency and efficacy with the use of empirical predictive models and molecular rapid tests. All along, beach managers have actively incorporated new findings into their monitoring programs. With the abundance of research conducted and information gained over the last 25 years, “Beach Science” has emerged, and the Great Lakes have been a focal point for much of the ground-breaking work. Here, we review the accumulated research on microbiological water quality of Great Lakes beaches and provide a historic context to the collaborative efforts that have advanced this emerging science.

Great Lakes↗

USGS1980

Paleoenvironment of the New Albany Shale Group ( Devonian- Mississippian) of Illinois

The distribution of lithofacies in the New Albany Shale Group of Illinois was determined by wave energy, bottom oxygenation, and bottom topography in a deep water stratified anoxic basin. A transect from the margin to the center of the Illinois Basin reveals a complete transition from high energy, aerobic, shallow-water environments to quiet, anaerobic, deep-water environments. Shallow areas at the margin of the basin are characterized by rapid facies transitions over short distances. High energy, very shallow conditions are recorded by oolitic-skeletal grainstones and packstones with abundant brachiopods, crinoids, trilobites, and other calcified marine invertebrates. Bioturbation did not destroy primary sedimentary structures in these facies. Offshore, less agitated areas are represented by highly bioturbated carbonate wackestones, argillaceous quartz siltstones, and greenish-gray mudstones. Calcified invertebrates are generally rare in these facies, indicating deposition in dysaerobic conditions. Basinward, slope areas are characterized by olive-gray to black, weakly bioturbated shales commonly interbedded with thickly laminated black shales. Trace fossils, including Zoophycos, Chondrites , and Planolites , are abundant along the bases of the olive-gray beds. In areas where the anaerobic/dysaerobic boundary intersected the bottom slope, slight fluctuations of the position of the boundary resulted in thin interbedding of olive-gray and black shales and laterally persistent interfingering of the two lithologies. Anaerobic conditions prevailed during most of New Albany time in the deepest areas of the basin, and finely laminated, undisturbed, pelagic black shales were deposited.

Journal of Sedimentary Petrology↗

USGS1997

Diatoms in sediments of perennially ice-covered Lake Hoare, and implications for interpreting lake history in the McMurdo Dry Valleys of Antarctica

Diatom assemblages in surficial sediments, sediment cores, sediment traps, and inflowing streams of perennially ice-covered Lake Hore, South Victorialand, Antarctica were examined to determine the distribution of diatom taxa, and to ascertain if diatom species composition has changed over time. Lake Hoare is a closed-basin lake with an area of 1.8 km2, maximum depth of 34 m, and mean depth of 14 m, although lake level has been rising at a rate of 0.09 m yr-1 in recent decades. The lake has an unusual regime of sediment deposition: coarse grained sediments accumulate on the ice surface and are deposited episodically on the lake bottom. Benthic microbial mats are covered in situ by the coarse episodic deposits, and the new surfaces are recolonized. Ice cover prevents wind-induced mixing, creating the unique depositional environment in which sediment cores record the history of a particular site, rather than a lake=wide integration. Shallow-water (<1 m) diatom assemblages (Stauroneis anceps, Navicula molesta, Diadesmis contenta var. parallela, Navicula peraustralis) were distinct from mid-depth (4-16 m) assemblages (Diadesmis contenta, Luticola muticopsis fo. reducta, Stauroneis anceps, Diadesmis contenta var. parallela, Luticola murrayi) and deep-water (2-31 m) assemblages (Luticola murrayi, Luticola muticopsis fo. reducta, Navicula molesta. Analysis of a sediment core (30 cm long, from 11 m water depth) from Lake Hoare revealed two abrupt changes in diatom assemblages. The upper section of the sediment core contained the greatest biomass of benthic microbial mat, as well as the greatest total abundance and diversity of diatoms. Relative abundances of diatoms in this section are similar to the surficial samples from mid-depths. An intermediate zone contained less organic material and lower densities of diatoms. The bottom section of core contained the least amount of microbial mat and organic material, and the lowest density of diatoms. The dominant process influencing species composition and abundance of diatom assemblages in the benthic microbial mats is episodic deposition of coarse sediment from the ice surface.

Journal of Paleolimnology↗

USGS2017

Microbial survival strategies in ancient permafrost: insights from metagenomics

In permafrost (perennially frozen ground) microbes survive oligotrophic conditions, sub-zero temperatures, low water availability and high salinity over millennia. Viable life exists in permafrost tens of thousands of years old but we know little about the metabolic and physiological adaptations to the challenges presented by life in frozen ground over geologic time. In this study we asked whether increasing age and the associated stressors drive adaptive changes in community composition and function. We conducted deep metagenomic and 16 S rRNA gene sequencing across a Pleistocene permafrost chronosequence from 19 000 to 33 000 years before present (kyr). We found that age markedly affected community composition and reduced diversity. Reconstruction of paleovegetation from metagenomic sequence suggests vegetation differences in the paleo record are not responsible for shifts in community composition and function. Rather, we observed shifts consistent with long-term survival strategies in extreme cryogenic environments. These include increased reliance on scavenging detrital biomass, horizontal gene transfer, chemotaxis, dormancy, environmental sensing and stress response. Our results identify traits that may enable survival in ancient cryoenvironments with no influx of energy or new materials.

The ISME Journal↗

USGS2007

Nitrite toxicity of Litopenaeus vannamei in water containing low concentrations of sea salt or mixed salts

The uptake, depuration and toxicity of environmental nitrite was characterized in Litopenaeus vannamei exposed in water containing low concentrations of artificial sea salt or mixed salts. In 2 g/L artificial sea salts, nitrite was concentrated in the hemolymph in a dose-dependent and rapid manner (steady-state in about 2 d). When exposed to nitrite in 2 g/L artificial sea salts for 4 d and then moved to a similar environment without added nitrite, complete depuration occurred within a day. Increasing salinity up to 10 g/L decreased uptake of environmental nitrite. Nitrite uptake in environments containing 2 g/L mixed salts (combination of sodium, potassium, calcium and magnesium chlorides) was similar to or lower than rates in 2 g/L artificial sea salt. Toxicity was inversely related to total dissolved salt and chloride concentrations and was highest in 2 g/L artificial sea salt (96-h medial lethal concentration = 8.4 mg/L nitrite-N). Animals that molted during the experiments did not appear to be more susceptible to nitrite than animals that did not molt. The shallow slope of the curve describing the relationship between toxicity and salinity suggests that management of nitrite toxicity in low-salinity shrimp ponds by addition of more salts may not be practical.

Journal of the World Aquaculture Society↗

USGS2015

A comparison of estimates of basin-scale soil-moisture evapotranspiration and estimates of riparian groundwater evapotranspiration with implications for water budgets in the Verde Valley, Central Arizona, USA

Population growth in the Verde Valley in Arizona has led to efforts to better understand water availability in the watershed. Evapotranspiration (ET) is a substantial component of the water budget and a critical factor in estimating groundwater recharge in the area. In this study, four estimates of ET are compared and discussed with applications to the Verde Valley. Higher potential ET (PET) rates from the soil-water balance (SWB) recharge model resulted in an average annual ET volume about 17% greater than for ET from the basin characteristics (BCM) recharge model. Annual BCM PET volume, however, was greater by about a factor of 2 or more than SWB actual ET (AET) estimates, which are used in the SWB model to estimate groundwater recharge. ET also was estimated using a method that combines MODIS-EVI remote sensing data and geospatial information and by the MODFLOW-EVT ET package as part of a regional groundwater-flow model that includes the study area. Annual ET volumes were about same for upper-bound MODIS-EVI ET for perennial streams as for the MODFLOW ET estimates, with the small differences between the two methods having minimal impact on annual or longer groundwater budgets for the study area.

Arizona↗