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Disease, environment, and pollution: Understanding drivers behind tumour outbreaks in sea turtles

Various wildlife diseases of the Anthropocene (the Anthropocene currently has no formal status in the Divisions of Geologic Time https://pubs.usgs.gov/fs/2018/3054/fs20183054.pdf , accessed 4 June 2024) have root causes that are found in human-driven environmental disturbances. Fibropapillomatosis of sea turtles is exemplary of a human-exacerbated wildlife disease, and this case study offers an overview of how we applied a One Health approach and interdisciplinary process to better understand its complexity and highlight the interconnections existing between the health of the environment, and of the wildlife and humans living in it. Persistent organic pollutants (POPs) have known detrimental effects on human and wildlife health. Ubiquitous in the environment, these degradation-resistant chemicals have a high bioaccumulation potential. This case study describes the interdisciplinary plan and One Health design implemented to measure the role of harmful pollutants in the occurrence of a marine turtle panzootic fibropapillomatosis (FP). FP is a neoplastic disease that causes the growth of debilitating tumours on soft tissues and internal organs. Disease incidence has been increasing significantly throughout the Anthropocene and the reasons are still uncertain. The pervasive effect of pollution in marine coastal habitats has often been hypothesized as a driver of high disease prevalence but never fully tested. Our project combines disease ecology, marine field biology, and chemical toxicology in the attempt to unravel the intricate dynamics behind FP. We here describe the complex process used to develop a methodology to measure levels of harmful seawater pollutants such as polychlorinated biphenyls (PCBs), polycyclic aromatic hydrocarbons (PAHs), and organochlorine pesticides (OCPs) in important sea turtle habitats in Florida. The proposed contaminants are among the top priority harmful pollutants, highly carcinogenic in aquatic animals, and bioaccumulate in sea turtles. Although only providing a description of the methodological process, this case study can help future research to apply similar transdisciplinary studies in the context of wildlife diseases. Understanding the effects of anthropogenic-driven pollution activity on ocean health can clarify its consequences to the health of wildlife and humans living in and around that environment.

One Health Cases

Detection of environmental DNA of bigheaded carps in samples collected from selected locations in the St. Croix River and in the Mississippi River

The use of molecular methods, such as the detection of environmental deoxyribonucleic acid (eDNA), have become an increasingly popular tool in surveillance programs that monitor for the presence of invasive species in aquatic systems. One early application of these methods in aquatic systems was surveillance for DNA of Asian carps (specifically bighead carp Hypophthalmichthys nobilis and silver carp H. molitrix) in water samples taken from the Chicago Area Waterway System. The ability to identify DNA of a species in an environmental sample presents a potentially powerful tool because these sensitive analyses can presumably detect the presence of DNA in water even when the species is not abundant or are difficult to catch or monitor with traditional gear. Prior to research presented in this report, an initial eDNA surveillance effort was completed in selected locations in the Upper Mississippi and St. Croix Rivers in 2011 after the capture of a bighead carp in the St. Croix River near Prescott, WI. Data presented in this report were developed to duplicate the 2011 monitoring results from the Upper Mississippi and St. Croix Rivers and to provide critical insight into the technique to inform future work in these locations. We specifically sought to understand the potential confounding effects of other pathways of eDNA movement (e.g., fish-eating birds, watercraft) on the variation in background DNA by collecting water samples from (1) sites within the St. Croix River and the upper Mississippi River where the DNA of silver carp was previously detected, (2) sites considered to be free of Asian carp, and (3) a site known to have a large population of Asian carp. We also sought to establish a baseline Asian carp eDNA signature to which future eDNA sampling efforts could be compared. All samples taken as part of this effort were processed using conventional polymerase chain reaction (PCR) according to procedures outlined in the U.S. Army Corps of Engineers Quality Assurance Project Plan with minor deviations designed to enhance the rigor of our data. Presence of DNA in PCR-positive samples was confirmed by Sanger sequencing (forward and reverse) and sequences were considered positive only if sequences (forward and reverse) of ≥150 base pairs had a match of ≥95% to those of published sequences for bighead carp or silver carp. The DNA of bighead carp and silver carp was not detected in environmental samples collected above and below St. Croix Falls Dam on the St. Croix River, above and below the Coon Rapids Dam and below Lock and Dam 1 on the Upper Mississippi River, and from two negative control lakes, Square Lake and Lake Riley. The DNA of silver carp was detected in environmental samples collected below Lock and Dam 19 at Keokuk, Iowa, a reach of the river with high silver carp abundance. The portion (68%) of environmental samples taken below Lock and Dam 19 that were determined to contain the DNA of silver carp was similar to that reported in the scientific literature for other abundant species. The DNA of bighead carp, however, was not detected in environmental samples collected below Lock and Dam 19, a reach of the river known to have bighead carp. Previous reported detections of the DNA of silver carp in samples collected in 2011 were not replicated in this study. Additional analyses are planned for the DNA extracted from the samples collected in 2012. Those analyses may provide additional information regarding the lack of amplification of bighead carp DNA and the lengths of the sequences of silver carp DNA present in samples taken below Lock and Dam 19. These additional analyses may help inform the use of eDNA monitoring in large, complex systems like the Mississippi River.

Minnesota, Wisconsin

Use of structural geology in exploration for and mining of sedimentary rock-hosted Au deposits

Structural geology is an important component in regional-, district- and orebody-scale exploration and development of sedimentary rock-hosted Au deposits. Identification of timing of important structural events in an ore district allows analysis and classification of fluid conduits and construction of genetic models for ore formation. The most practical uses of structural geology deal with measurement and definition of various elements that comprise orebodies, which can then be directly applied to ore-reserve estimation, ground control, grade control, safety issues, and mine planning. District- and regional-scale structural studies are directly applicable to long-term strategic planning, economic analysis, and land ownership. Orebodies in sedimentary rock-hosted Au deposits are discrete, hypogene, epigenetic masses usually hosted in a fault zone, breccia mass, or lithologic bed or unit. These attributes allow structural geology to be directly applied to the mining and exploration of sedimentary rock-hosted Au deposits. Internal constituents in orebodies reflect unique episodes relating to ore formation. The main internal constituents in orebodies are ore minerals, gangue, and alteration minerals that usually are mixed with one another in complex patterns, the relations among which may be used to interpret the processes of orebody formation and control. Controls of orebody location and shape usually are due to structural dilatant zones caused by changes in attitude, splays, lithologic contacts, and intersections of the host conduit or unit. In addition, conceptual parameters such as district fabric, predictable distances, and stacking also are used to understand the geometry of orebodies. Controls in ore districts and location and geometry of orebodies in ore districts can be predicted to various degrees by using a number of qualitative concepts such as internal and external orebody plunges, district plunge, district stacking, conduit classification, geochemical, geobarometric and geothermal gradients, and tectonic warps. These concepts have practical and empirical application in most mining districts where they are of use in the exploration for ore, but are of such broad and general application that they may not represent known or inferred ore formation processes. Close spatial relation among some sedimentary rock- hosted Au deposits and their host structures suggests that the structures and the orebodies are genetically linked because they may have shared the same developmental history. Examples of probable syn-deformational genesis and structural control of sedimentary rock-hosted Au deposits are in the large Betze deposit in the Carlin trend, Nevada and in the Lannigou, Jinlongshan, and Maanqiao Au deposits, China.

Open-File Report

Regional landslide-hazard assessment for Seattle, Washington, USA

Landslides are a widespread, frequent, and costly hazard in Seattle and the Puget Sound area of Washington State, USA. Shallow earth slides triggered by heavy rainfall are the most common type of landslide in the area; many transform into debris flows and cause significant property damage or disrupt transportation. Large rotational and translational slides, though less common, also cause serious property damage. The hundreds of landslides that occurred during the winters of 1995-96 and 1996-97 stimulated renewed interest by Puget Sound communities in identifying landslide-prone areas and taking actions to reduce future landslide losses. Informal partnerships between the U.S. Geological Survey (USGS), the City of Seattle, and private consultants are focusing on the problem of identifying and mapping areas of landslide hazard as well as characterizing temporal aspects of the hazard. We have developed GIS-based methods to map the probability of landslide occurrence as well as empirical rainfall thresholds and physically based methods to forecast times of landslide occurrence. Our methods for mapping landslide hazard zones began with field studies and physically based models to assess relative slope stability, including the effects of material properties, seasonal groundwater levels, and rainfall infiltration. We have analyzed the correlation between historic landslide occurrence and relative slope stability to map the degree of landslide hazard. The City of Seattle is using results of the USGS studies in storm preparedness planning for emergency access and response, planning for development or redevelopment of hillsides, and municipal facility planning and prioritization. Methods we have developed could be applied elsewhere to suit local needs and available data.

Landslides

Runoff response to directional land cover change across reference basins in the conterminous United States

Land cover change plays a critical role in influencing hydrological responses. Change in land cover has impacted runoff across basins with substantial human interference; however, the impacts in basins with minimal human interference have been studied less. In this study, we investigated the impacts of directional land cover changes (forest to/from combined grassland and shrubland) in runoff coefficient (RC; ratio of runoff to precipitation) and runoff volume across 603 low human interference reference basins in the conterminous United States (CONUS). The results indicate basins with significant ( p <0.05) increasing trends in runoff and RC were across the northeast and northwest regions of CONUS, and basins with decreasing trends were in the southern CONUS region. A unit percent increase in basin area from grassland and shrubland to forest was associated with a ∼4% decrease in RC across basins with decreasing RC trends. Similarly, a unit percent increase in basin area from forest to a combined grassland and shrubland was associated with a ∼1% increase in RC across increasing RC trend basins. Runoff volume was decreased (increased) by ∼25 × 10 6 m 3 yr −1 (∼9 × 10 6 m 3 yr −1 ) across basins with decreasing (increasing) trends in runoff and RC. When relating runoff volume with the area of directional land cover changes, each 1 km 2 increase in area from grassland and shrubland to forest resulted in a decrease of ∼530,000 m 3 runoff volume across basins with decreasing trends. In contrast, each 1 km 2 increase in area from forest to grassland and shrubland increased runoff volume by ∼200,000 m 3 across increasing trend basins. Basins in the southern region of CONUS were more impacted by runoff parameters (RC and runoff volume) from directional land cover changes than basins in the northern region. The findings of this study are useful for planning and managing water availability for sustainable and adaptive water resources management at regional scales.

Advances in Water Resources

Transfer learning with convolutional neural networks for hydrological streamline delineation

Hydrological streamline delineation is critical for effective environmental management, influencing agriculture sustainability, river dynamics, watershed planning, and more. This study develops a novel approach to combining transfer learning with convolutional neural networks that capitalize on image-based pre-trained models to improve the accuracy and transferability of streamline delineation. We evaluate the performance of eleven image-based pre-trained models and a baseline model using datasets from Rowan County, North Carolina, and Covington River, Virginia in the USA. Our results demonstrate that when models are adapted to a new area, the fine-tuned ImageNet pre-trained model exhibits superior predictive accuracy, markedly higher than the models trained from scratch or those only fine-tuned on the same area. Moreover, the pre-trained model achieves better smoothness and connectivity between classified streamline channels. These findings underline the effectiveness of transfer learning in enhancing the delineation of hydrological streamlines across varied geographies, offering a scalable solution for accurate and efficient environmental modelling.

North Carolina, Virginia

Fire disturbance influences endangered Cape Sable Seaside Sparrow (Ammopiza maritima mirabilis) relative bird count

Periodicity of fire disturbance is a known driver of ecosystem function and is reported as important in both promoting and maintaining viable breeding habitat for the endangered Cape Sable Seaside Sparrow ( Ammospiza maritima mirabilis ; CSSS). In south Florida, the CSSS serves as a fine-scale indicator of the marl and mixed-marl prairie communities of the Florida Everglades. The CSSS distribution is affected by numerous well-documented physical drivers, including water depth and fire regime. Here, we fit zero-inflated negative binomial generalized linear mixed models and used model selection to determine the relationship between CSSS bird count observations from 1992 to 2014 and the spatially-specific fire return interval on the landscape. CSSS bird count was highest at a 5–8-year fire return interval and increased linearly with the percent of cell burned (400 × 400 m cells). The results of this study can inform management plans designed to maintain existing, and promote new, marl prairie habitat for conservation of the CSSS.

Florida

Thirty years of the U.S. National Land Cover Database: Impacts and future direction

The National Land Cover Database (NLCD), developed through the Multi-Resolution Land Characteristics Consortium, was initiated 30 years ago and has continually provided critical, Landsat-based landcover and land-change information for the United States. Originally launched to address the lack of national-scale, moderate-resolution land-cover data, NLCD has evolved from the pioneering 1992 dataset into a comprehensive, annually updated product suite. Key innovations include the introduction of impervious surface mapping, forest canopy mapping, standardized Landsat mosaics, national-scale accuracy assessments, continual evolution of deep learning and artificial intelligence methodologies, and a transition toward operational, change-focused monitoring. The NLCD has become an essential resource for scientific research, land management, and policy development, with extensive adoption across federal, state, and local agencies; academia; and the private sector. The NLCD data underpin a wide array of applications, including biodiversity conservation, urban planning, hydrology, human health studies, and natural hazard assessment. As new global and high-resolution commercial land-cover products emerge, the NLCD continues to distinguish itself through its temporal depth, federal backing, and thematic consistency. Moving forward, the NLCD will maintain its niche as the leading, moderate-resolution, long-term land-cover and land-change dataset for the United States, ensuring continued support for broad national applications while complementing higher-resolution and global-mapping efforts.

Photogrammetric Engineering & Remote Sensing

Hydrology, water quality, and phosphorus loading of Kirby Lake, Barron County, Wisconsin

In 1992, residents near Kirby Lake, located about five miles northwest of Cumberland, in Barron County, Wisconsin, formed the Kirby Lake Management District. The Lake District immediately began to gather information needed for the preparation of a comprehensive lake-management plan that would be used to protect the natural and recreational assets of the lake. The Lake District completed a land-use inventory of the watershed and an evaluation of available lake water-quality data. The land-use data were used to assess the potential contribution of nutrients to the lake from the watershed. The evaluation of lake water-quality data, which were collected as part of the Wisconsin Department of Natural Resources (WDNR) Self-Help Monitoring Program, indicated the lake has relatively good water quality. Before a comprehensive lake-management plan could be prepared, however, a better understanding of several aspects of the lake and its surroundings was needed. To address those aspects including the definition of the lake's hydrology and the principal sources of nutrients, and the relation of the lake's water quality to nutrient loading the U.S. Geological Survey, in cooperation with the Lake District and the WDNR (through a Lake Management Planning Grant), conducted a study of Kirby Lake and its watershed. This Fact Sheet presents the results of that study.

Wisconsin

Tidal flow dynamics and background fluorescence of the Atlantic Intracoastal Waterway in the vicinity of Sullivan’s Island and the Isle of Palms, South Carolina, 2011-12

To effectively plan site-specific studies to understand the connection between wastewater effluent and shellfish beds, data are needed concerning flow dynamics and background fluorescence in the Atlantic Intracoastal Waterway near the effluent outfalls on Sullivan’s Island and the Isle of Palms. Tidal flows were computed by the U.S. Geological Survey for three stations and longitudinal water-quality profiles were collected at high and low tide. Flows for the three U.S. Geological Survey stations, the Atlantic Intracoastal Waterway by the Isle of Palms Marina, the Atlantic Intracoastal Waterway by the Ben M. Sawyer Memorial Bridge at Sullivan’s Island, and Breach Inlet, were computed for the 53-day period from December 4, 2011, to January 26, 2012. The largest flows occurred at Breach Inlet and ranged from -58,600 cubic feet per second (ft 3 /s) toward the Atlantic Intracoastal Waterway to 63,300 ft 3 /s toward the Atlantic Ocean. Of the two stations on the Atlantic Intracoastal Waterway, the Sullivan’s Island station had the larger flows and ranged from -6,360 ft 3 /s to the southwest (toward Charleston Harbor) to 8,930 ft 3 /s to the northeast. Computed tidal flow at the Isle of Palms station ranged from -3,460 ft 3 /s toward the southwest to 6,410 ft 3 /s toward the northeast. The synoptic water-quality study showed that the stations were well mixed vertically and horizontally. All fluorescence measurements (recorded as rhodamine concentration) were below the accuracy of the sensor and the background fluorescence would not likely interfere with a dye-tracer study.

South Carolina

Estimation of missing water-level data for the Everglades Depth Estimation Network (EDEN), 2013 update

The Everglades Depth Estimation Network is an integrated network of real-time water-level gaging stations, a ground-elevation model, and a water-surface elevation model designed to provide scientists, engineers, and water-resource managers with water-level and water-depth information (1991-2013) for the entire freshwater portion of the Greater Everglades. The U.S. Geological Survey Greater Everglades Priority Ecosystems Science provides support for the Everglades Depth Estimation Network in order for the Network to provide quality-assured monitoring data for the U.S. Army Corps of Engineers Comprehensive Everglades Restoration Plan. In a previous study, water-level estimation equations were developed to fill in missing data to increase the accuracy of the daily water-surface elevation model. During this study, those equations were updated because of the addition and removal of water-level gaging stations, the consistent use of water-level data relative to the North American Vertical Datum of 1988, and availability of recent data (March 1, 2006, to September 30, 2011). Up to three linear regression equations were developed for each station by using three different input stations to minimize the occurrences of missing data for an input station. Of the 667 water-level estimation equations developed to fill missing data at 223 stations, more than 72 percent of the equations have coefficients of determination greater than 0.90, and 97 percent have coefficients of determination greater than 0.70.

Florida

Reconnaissance of Lake Chackachamna, Alaska

The purpose of this brief investigation was to obtain general information on Lake Chackachamna and its water-power possibilities which would serve as a guide in planning and executing future studies. Field investigation consisted of a flight to the lake in a small float plane (see Plate I-B) by the writer on August 3, 1948, landing on the lake near the outlet, making a brief study of conditions there and taking a number of pictures of which several are included in this report with appropriate descriptions. The flight was made with Jack Carr of Anchorage from whom the plane was chartered. It was rather windy at time of landing on the lake and as the wind velocity was increasing Mr. Carr recommended that the stay there be made as short as possible and was consequently less than an hour.

Alaska

The 1965 Mississippi River flood in Iowa

The great flood of 1965 on the Mississippi River, along the eastern border if the State, exceeded any flood known in 139 years. It cause damages probably in excess of ten millions of dollars in the State of Iowa. Studied now in progress will more thoroughly cover this and other phases of the flood. The underlying cause of the flood was an abnormally cold winter which prevented the melting of an excessive snow cover in the upper reaches of the basin. Heavy rains late in March followed by rapid melting triggered the runoff which caused the floods. Peak discharges experienced ranged from 276,000 cfs (cubic feet per second) at McGregor near the northern boundary of the State to 327,000 cfs at Keokuk near the southern boundary. Tributary streams in Iowa were receding as the main-stem flood peak passed their mouths. The discharge they contributed was generally insignificant except for the larger streams. Flood data compiled for the part of the River along the eastern border include flood discharges, flood elevations, and the frequency of floods of varying magnitudes. They also include the daily or more frequent stage and discharge data for both the Mississippi River and the downstream gaging stations on Iowa tributaries for the period March-May 1965. Sufficient data are presented to permit studied for preparation of plans for protective works and plans for zoning or for flood plain regulation.

Illinois, Iowa, Wisconsin

Cross-section data for selected Puerto Rico streams

The data presented in this report were originally collected for the purpose of delineating the inundation which could be expected by floods of selected magnitudes. As this study progressed, it became apparent that further analysis would be a duplication of effort as the United States Flood Insurance Administration was requiring similar information. Therefore, it was decided to publish the cross-section data that had been obtained and not to go into further analysis with this study. These cross section data can be used in Flood Insurance Administration studies and in other studies related to the planning, development, and management of flood plains. The data were collected by the Caribbean District of the Water Resources Division of the U.S. Geological Survey in cooperation with the Puerto Rico Department of Natural Resources.

Puerto Rico

Development of a Precipitation-Runoff Model to Simulate Unregulated Streamflow in the Salmon Creek Basin, Okanogan County, Washington

Surface water has been diverted from the Salmon Creek Basin for irrigation purposes since the early 1900s, when the Bureau of Reclamation built the Okanogan Project. Spring snowmelt runoff is stored in two reservoirs, Conconully Reservoir and Salmon Lake Reservoir, and gradually released during the growing season. As a result of the out-of-basin streamflow diversions, the lower 4.3 miles of Salmon Creek typically has been a dry creek bed for almost 100 years, except during the spring snowmelt season during years of high runoff. To continue meeting the water needs of irrigators but also leave water in lower Salmon Creek for fish passage and to help restore the natural ecosystem, changes are being considered in how the Okanogan Project is operated. This report documents development of a precipitation-runoff model for the Salmon Creek Basin that can be used to simulate daily unregulated streamflows. The precipitation-runoff model is a component of a Decision Support System (DSS) that includes a water-operations model the Bureau of Reclamation plans to develop to study the water resources of the Salmon Creek Basin. The DSS will be similar to the DSS that the Bureau of Reclamation and the U.S. Geological Survey developed previously for the Yakima River Basin in central southern Washington. The precipitation-runoff model was calibrated for water years 1950-89 and tested for water years 1990-96. The model was used to simulate daily streamflows that were aggregated on a monthly basis and calibrated against historical monthly streamflows for Salmon Creek at Conconully Dam. Additional calibration data were provided by the snowpack water-equivalent record for a SNOTEL station in the basin. Model input time series of daily precipitation and minimum and maximum air temperatures were based on data from climate stations in the study area. Historical records of unregulated streamflow for Salmon Creek at Conconully Dam do not exist for water years 1950-96. Instead, estimates of historical monthly mean unregulated streamflow based on reservoir outflows and storage changes were used as a surrogate for the missing data and to calibrate and test the model. The estimated unregulated streamflows were corrected for evaporative losses from Conconully Reservoir (about 1 ft3/s) and ground-water losses from the basin (about 2 ft3/s). The total of the corrections was about 9 percent of the mean uncorrected streamflow of 32.2 ft3/s (23,300 acre-ft/yr) for water years 1949-96. For the calibration period, the basinwide mean annual evapotranspiration was simulated to be 19.1 inches, or about 83 percent of the mean annual precipitation of 23.1 inches. Model calibration and testing indicated that the daily streamflows simulated using the precipitation-runoff model should be used only to analyze historical and forecasted annual mean and April-July mean streamflows for Salmon Creek at Conconully Dam. Because of the paucity of model input data and uncertainty in the estimated unregulated streamflows, the model is not adequately calibrated and tested to estimate monthly mean streamflows for individual months, such as during low-flow periods, or for shorter periods such as during peak flows. No data were available to test the accuracy of simulated streamflows for lower Salmon Creek. As a result, simulated streamflows for lower Salmon Creek should be used with caution. For the calibration period (water years 1950-89), both the simulated mean annual streamflow and the simulated mean April-July streamflow compared well with the estimated uncorrected unregulated streamflow (UUS) and corrected unregulated streamflow (CUS). The simulated mean annual streamflow exceeded UUS by 5.9 percent and was less than CUS by 2.7 percent. Similarly, the simulated mean April-July streamflow exceeded UUS by 1.8 percent and was less than CUS by 3.1 percent. However, streamflow was significantly undersimulated during the low-flow, baseflow-dominated months of November through F

Scientific Investigations Report

Effects of the H-3 Highway stormwater runoff on the water quality of Halawa Stream, Oahu, Hawaii, November 1998 to August 2004

Since November 1998, water-quality data have been collected from the H-3 Highway Storm Drain C, which collects runoff from a 4-mi-long viaduct, and from Halawa Stream on Oahu, Hawaii. From January 2001 to August 2004, data were collected from the storm drain and four stream sites in the Halawa Stream drainage basin as part of the State of Hawaii Department of Transportation Storm Water Monitoring Program. Data from the stormwater monitoring program have been published in annual reports. This report uses these water-quality data to explore how the highway storm-drain runoff affects Halawa Stream and the factors that might be controlling the water quality in the drainage basin. In general, concentrations of nutrients, total dissolved solids, and total suspended solids were lower in highway runoff from Storm Drain C than at stream sites upstream and downstream of Storm Drain C. The opposite trend was observed for most trace metals, which generally occurred in higher concentrations in the highway runoff from Storm Drain C than in the samples collected from Halawa Stream. The absolute contribution from Storm Drain C highway runoff, in terms of total storm loads, was much smaller than at stations upstream and downstream, whereas the constituent yields (the relative contribution per unit drainage basin area) at Storm Drain C were comparable to or higher than storm yields at stations upstream and downstream. Most constituent concentrations and loads in stormwater runoff increased in a downstream direction. The timing of the storm sampling is an important factor controlling constituent concentrations observed in stormwater runoff samples. Automated point samplers were used to collect grab samples during the period of increasing discharge of the storm throughout the stormflow peak and during the period of decreasing discharge of the storm, whereas manually collected grab samples were generally collected during the later stages near the end of the storm. Grab samples were analyzed to determine concentrations and loads at a particular point in time. Flow-weighted time composite samples from the automated point samplers were analyzed to determine mean constituent concentrations or loads during a storm. Chemical analysis of individual grab samples from the automated point sampler at Storm Drain C demonstrated the “first flush” phenomenon—higher constituent concentrations at the beginning of runoff events—for the trace metals cadmium, lead, zinc, and copper, whose concentrations were initially high during the period of increasing discharge and gradually decreased over the duration of the storm. Water-quality data from Storm Drain C and four stream sites were compared to the State of Hawaii Department of Health (HDOH) water-quality standards to determine the effects of highway storm runoff on the water quality of Halawa Stream. The geometric-mean standards and the 10- and 2-percent-of-the-time concentration standards for total nitrogen, nitrite plus nitrate, total phosphorus, total suspended solids, and turbidity were exceeded in many of the comparisons. However, these standards were not designed for stormwater sampling, in which constituent concentrations would be expected to increase for short periods of time. With the aim of enhancing the usefulness of the water-quality data, several modifications to the stormwater monitoring program are suggested. These suggestions include (1) the periodic analyzing of discrete samples from the automated point samplers over the course of a storm to get a clearer profile of the storm, from first flush to the end of the receding discharge; (2) adding an analysis of the dissolved fractions of metals to the sampling plan; (3) installation of an automatic sampler at Bridge 8 to enable sampling earlier in the storms; (4) a one-time sampling and analysis of soils upstream of Bridge 8 for base-line contaminant concentrations; (5) collection of samples from Halawa Stream during low-flow conditions to determine base-line conditions; (6) addition of the dissolved fraction of the metals chromium and nickel to the sampling plan; (7) elimination of fecal coliform and biochemical oxygen demand (BOD) analyses from the sampling plan; and (8) a study to examine the efficiency of the highway street sweeping.

Hawaii

Geohydrology and Water Quality of the Valley-Fill Aquifer System in the Upper Sixmile Creek and West Branch Owego Creek Valleys in the Town of Caroline, Tompkins County, New York

In 2002, the U.S. Geological Survey, in cooperation with the Town of Caroline and Tompkins County Planning Department, began a study of the valley-fill aquifer system in upper Sixmile Creek and headwaters of West Branch Owego Creek valleys in the Town of Caroline, NY. The purpose of the study is to provide geohydrologic data to county and town planners as they develop a strategy to manage and protect their water resources. The first aquifer reach investigated in this series is in the Town of Caroline and includes the upper Sixmile Creek valley and part of West Branch Owego Creek valley. The portions of the valley-fill aquifer system that are comprised of saturated coarse-grained sediments including medium to coarse sand and sandy gravel form the major aquifers. Confined sand and gravel units form the major aquifers in the western and central portions of the upper Sixmile Creek valley, and an unconfined sand and gravel unit forms the major aquifer in the eastern portion of the upper Sixmile Creek valley and in the headwaters of the West Branch Owego Creek valley. The valley-fill deposits are thinnest near the edges of the valley where they pinch out along the till-mantled bedrock valley walls. The thickness of the valley fill in the deepest part of the valley, at the western end of the study area, is about 100 feet (ft); the thickness is greater than 165 ft on top of the Valley Heads Moraine in the central part of the valley. An estimated 750 people live over and rely on groundwater from the valley-fill aquifers in upper Sixmile Creek and West Branch Owego Creek valleys. Most groundwater withdrawn from the valley-fill aquifers is pumped from wells with open-ended 6-inch diameter casings; the remaining withdrawals are from shallow dug wells or cisterns that collect groundwater that discharges to springs (especially in the Brooktondale area). The valley-fill aquifers are the sources of water for about 200 households, several apartment complexes, two mobile home parks, a school, and several farms and small businesses. Most groundwater that is withdrawn from pumped wells is returned to the groundwater system via septic systems. Groundwater in the upper and basal confined aquifers in the upper Sixmile Creek valley is under artesian conditions everywhere except where the water discharges to springs along bluffs in the western end of the Sixmile Creek valley. Principal sources of recharge to the confined aquifers are (1) the sides of the valley where the confined aquifers may extend up along the flank of the bedrock valley wall and crop out at land surface or are overlain and in contact with surficial coarse-grained deltaic and fluvial sediments that provide a pathway through which direct precipitation and seepage losses from tributary streams can reach the buried aquifers, or (2) where the buried aquifers are isolated and receive recharge only from adjacent fine-grained sediment and bedrock. The base-flow and runoff components of total streamflow at two streamgages, Sixmile Creek at Brooktondale and Sixmile Creek at Bethel Grove, were calculated using hydrograph-separation techniques from 2003 to 2007 discharge records. Base flow constituted 64 and 56 percent of the total annual flow at the Brooktondale and Bethel Grove streamgages, respectively. Water-quality samples were collected from 2003 to 2005, with 10 surface-water samples collected seasonally during base-flow conditions at the Sixmile Creek at Brooktondale streamgage, and 12 samples were collected during base-flow conditions at several selected tributaries from 2004 to 2005. The predominant cation detected in the surface-water samples was calcium, but moderate amounts of magnesium, silica, and sodium were also detected; the major anions were bicarbonate, chloride, and sulfate. Sodium and chloride concentrations were relatively low in all samples but increased downstream from the Sixmile Creek sampling site at Six Hundred Road near Slaterville Springs, NY, to B

Scientific Investigations Report

Community exposure to tsunami hazards in California

Evidence of past events and modeling of potential events suggest that tsunamis are significant threats to low-lying communities on the California coast. To reduce potential impacts of future tsunamis, officials need to understand how communities are vulnerable to tsunamis and where targeted outreach, preparedness, and mitigation efforts may be warranted. Although a maximum tsunami-inundation zone based on multiple sources has been developed for the California coast, the populations and businesses in this zone have not been documented in a comprehensive way. To support tsunami preparedness and risk-reduction planning in California, this study documents the variations among coastal communities in the amounts, types, and percentages of developed land, human populations, and businesses in the maximum tsunami-inundation zone. The tsunami-inundation zone includes land in 94 incorporated cities, 83 unincorporated communities, and 20 counties on the California coast. According to 2010 U.S. Census Bureau data, this tsunami-inundation zone contains 267,347 residents (1 percent of the 20-county resident population), of which 13 percent identify themselves as Hispanic or Latino, 14 percent identify themselves as Asian, 16 percent are more than 65 years in age, 12 percent live in unincorporated areas, and 51 percent of the households are renter occupied. Demographic attributes related to age, race, ethnicity, and household status of residents in tsunami-prone areas demonstrate substantial range among communities that exceed these regional averages. The tsunami-inundation zone in several communities also has high numbers of residents in institutionalized and noninstitutionalized group quarters (for example, correctional facilities and military housing, respectively). Communities with relatively high values in the various demographic categories are identified throughout the report. The tsunami-inundation zone contains significant nonresidential populations based on 2011 economic data from Infogroup (2011), including 168,565 employees (2 percent of the 20-county labor force) at 15,335 businesses that generate approximately $30 billion in annual sales. Although the regional percentage of at-risk employees is low, certain communities, such as Belvedere, Alameda, and Crescent City, have high percentages of their local workforce in the tsunami-inundation zone. Employees in the tsunami-inundation zone are primarily in businesses associated with tourism (for example, accommodations, food services, and retail trade) and shipping (for example, transportation and warehousing, manufacturing, and wholesale trade), although the dominance of these sectors varies substantially among the 94 cities. Although the number of occupants is not known for each site, the tsunami-inundation zone contains numerous dependent-population facilities, such as schools and child daycare centers, which may have individuals with limited mobility. The tsunami-inundation zone includes a substantial number of facilities that provide community services, such as banks, religious organizations, and grocery stores, where local residents may be unaware of evacuation procedures if previous awareness efforts focused on home preparedness. There are also numerous recreational areas in the tsunami-inundation zone, such as amusement parks, marinas, city and county beaches, and State and national parks, which attract visitors who may not be aware of tsunami hazards or evacuation procedures. During peak summer months, estimated daily attendance at city and county beaches can be approximately six times larger than the total number of residents in the tsunami-inundation zone. Community exposure to tsunamis in California varies considerably—some communities may experience great losses that reflect only a small part of their community and others may experience relatively small losses that devastate them. Among 94 incorporated communities and the remaining unincorporated areas of the 20 coastal counties, the communities of Alameda, Oakland, Long Beach, Los Angeles, Huntington Beach, and San Diego have the highest number of people and businesses in the tsunami-inundation zone. The communities of Belvedere, Alameda, Crescent City, Emeryville, Seal Beach, and Sausalito have the highest percentages of people and businesses in this zone. On the basis of a composite index, the cities of Alameda, Belvedere, Crescent City, Emeryville, Oakland, and Long Beach have the highest combinations of the number and percentage of people and businesses in tsunami-prone areas.

California